Rw2G005060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000544
Physical Location & Seq
Forward (+)
4748101 .. 4748895
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G005060.1

Sequence Viewer

Length: 282 bp
ATGAAGAACAACGAATCTGTGCCAAATCGCGTTGTGGGCCCTGGCCAGGATGACCCATCTGCTATATGCTCAAAGCCGTTTCGATTCAGGGACATCGTATCTGTGGTAGGAAAGGAGCAGCAGCACATATTTCATTTTGATTGCTACTGCTATGGTGTGGAAGTGACGCGCAGGCTTGATGATTATGCCCATGGAAGAAGGGAGACATCAGCCCGTTGCCCTCTCTGCAGAAAAGAAATCAAGTATGGAGAATATCTTATTTACATCTCGAGGAGGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.87

Weight (kDa)

8.9

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 30, 169
AcoI YGGCCR 1 cut(s) 43
AfiI CCNNNNNNNGG 1 cut(s) 46
AjnI CCWGG 2 cut(s) 40, 45
Alw26I GTCTC 1 cut(s) 197
Ama87I CYCGRG 1 cut(s) 268
AoxI GGCC 2 cut(s) 37, 43
ApaI GGGCCC 1 cut(s) 41
ApeKI GCWGC 2 cut(s) 118, 121
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 2 cut(s) 37, 38
AvaI CYCGRG 1 cut(s) 268
BaeGI GKGCMC 1 cut(s) 41
BalI TGGCCA 1 cut(s) 45
BanII GRGCYC 1 cut(s) 41
BbvI GCAGC 2 cut(s) 130, 133
BccI CCATC 1 cut(s) 64
BceAI ACGGC 1 cut(s) 61
BciT130I CCWGG 2 cut(s) 42, 47
BcoDI GTCTC 1 cut(s) 197
BfmI CTRYAG 1 cut(s) 226
BisI GCNGC 2 cut(s) 119, 122
BlsI GCNGC 2 cut(s) 120, 123
Bme1390I CCNGG 2 cut(s) 42, 47
BmeT110I CYCGRG 1 cut(s) 268
BmgT120I GGNCC 2 cut(s) 37, 38
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 2 cut(s) 42, 47
BsaJI CCNNGG 2 cut(s) 40, 190
Bsc4I CCNNNNNNNGG 1 cut(s) 46
BseBI CCWGG 2 cut(s) 42, 47
BseDI CCNNGG 2 cut(s) 40, 190
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 46
BseSI GKGCMC 1 cut(s) 41
BseXI GCAGC 2 cut(s) 130, 133
Bsh1236I CGCG 2 cut(s) 30, 169
BshFI GGCC 2 cut(s) 39, 45
BsiHKCI CYCGRG 1 cut(s) 268
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 2 cut(s) 39, 45
BsoBI CYCGRG 1 cut(s) 268
Bsp120I GGGCCC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 41
Bsp19I CCATGG 1 cut(s) 190
BspANI GGCC 2 cut(s) 39, 45
BspFNI CGCG 2 cut(s) 30, 169
BspLI GGNNCC 1 cut(s) 39
BspMAI CTGCAG 1 cut(s) 230
BssECI CCNNGG 2 cut(s) 40, 190
BssT1I CCWWGG 1 cut(s) 190
Bst2UI CCWGG 2 cut(s) 42, 47
BstC8I GCNNGC 1 cut(s) 173
BstDSI CCRYGG 1 cut(s) 190
BstF5I GGATG 1 cut(s) 55
BstFNI CGCG 2 cut(s) 30, 169
BstHHI GCGC 1 cut(s) 171
BstMAI GTCTC 1 cut(s) 197
BstMWI GCNNNNNNNGC 2 cut(s) 36, 225
BstNI CCWGG 2 cut(s) 42, 47
BstSCI CCNGG 2 cut(s) 40, 45
BstSFI CTRYAG 1 cut(s) 226
BstSLI GKGCMC 1 cut(s) 41
BstUI CGCG 2 cut(s) 30, 169
BstV1I GCAGC 2 cut(s) 130, 133
BsuRI GGCC 2 cut(s) 39, 45
BtgI CCRYGG 1 cut(s) 190
BtsCI GGATG 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 173
CfoI GCGC 1 cut(s) 171
Cfr13I GGNCC 2 cut(s) 37, 38
CseI GACGC 1 cut(s) 175
CviAII CATG 1 cut(s) 191
CviJI RGCY 5 cut(s) 39, 45, 76, 175, 212
CviKI_1 RGCY 5 cut(s) 39, 45, 76, 175, 212
EaeI YGGCCR 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 41
Eco88I CYCGRG 1 cut(s) 268
EcoO109I RGGNCCY 1 cut(s) 38
EcoRII CCWGG 2 cut(s) 40, 45
EcoT14I CCWWGG 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 1 cut(s) 194
FaiI YATR 7 cut(s) 65, 67, 128, 153, 186, 192, 246
FaqI GGGAC 1 cut(s) 104
FatI CATG 1 cut(s) 190
Fnu4HI GCNGC 2 cut(s) 119, 122
FokI GGATG 1 cut(s) 62
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 2 cut(s) 119, 122
GlaI GCGC 1 cut(s) 170
GluI GCNGC 2 cut(s) 119, 122
HaeIII GGCC 2 cut(s) 39, 45
HgaI GACGC 1 cut(s) 175
HhaI GCGC 1 cut(s) 171
Hin1II CATG 1 cut(s) 194
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HinfI GANTC 2 cut(s) 14, 84
Hpy188III TCNNGA 1 cut(s) 268
HpyAV CCTTC 1 cut(s) 192
HpyCH4V TGCA 1 cut(s) 228
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 225
Hsp92II CATG 1 cut(s) 194
HspAI GCGC 1 cut(s) 169
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 6 cut(s) 27, 32, 54, 59, 73, 157
Lsp1109I GCAGC 2 cut(s) 130, 133
MaeIII GTNAC 1 cut(s) 163
MboII GAAGA 2 cut(s) 16, 207
MhlI GDGCHC 1 cut(s) 41
MlsI TGGCCA 1 cut(s) 45
MluNI TGGCCA 1 cut(s) 45
MnlI CCTC 3 cut(s) 231, 264, 267
Mox20I TGGCCA 1 cut(s) 45
MscI TGGCCA 1 cut(s) 45
MseI TTAA 1 cut(s) 280
Msp20I TGGCCA 1 cut(s) 45
MspR9I CCNGG 2 cut(s) 42, 47
MvaI CCWGG 2 cut(s) 42, 47
MvnI CGCG 2 cut(s) 30, 169
MwoI GCNNNNNNNGC 2 cut(s) 36, 225
NcoI CCATGG 1 cut(s) 190
NlaIII CATG 1 cut(s) 194
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 163
PaeR7I CTCGAG 1 cut(s) 268
PfeI GAWTC 2 cut(s) 14, 84
PkrI GCNGC 2 cut(s) 120, 123
Psp6I CCWGG 2 cut(s) 40, 45
PspGI CCWGG 2 cut(s) 40, 45
PspN4I GGNNCC 1 cut(s) 39
PspOMI GGGCCC 1 cut(s) 37
PspPI GGNCC 2 cut(s) 37, 38
PstI CTGCAG 1 cut(s) 230
SaqAI TTAA 1 cut(s) 280
SatI GCNGC 2 cut(s) 119, 122
Sau96I GGNCC 2 cut(s) 37, 38
ScrFI CCNGG 2 cut(s) 42, 47
SduI GDGCHC 1 cut(s) 41
SfcI CTRYAG 1 cut(s) 226
Sfr274I CTCGAG 1 cut(s) 268
SlaI CTCGAG 1 cut(s) 268
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
StyD4I CCNGG 2 cut(s) 40, 45
StyI CCWWGG 1 cut(s) 190
TaqI TCGA 2 cut(s) 82, 269
TfiI GAWTC 2 cut(s) 14, 84
Tru1I TTAA 1 cut(s) 280
Tru9I TTAA 1 cut(s) 280
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 2 cut(s) 118, 121
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 2 cut(s) 17, 122
XhoI CTCGAG 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.