RLG00000019062

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000544
Physical Location & Seq
Forward (+)
45847262 .. 45848731
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019062

Sequence Viewer

Length: 618 bp
ATGCCGAAGAGAAAACGAGTGCAGGTTTCGACCAGCCGGGTCACCCAAATAACAGCGATAAAGTATCCAATTATTTTCTTGTTAGATCTGACCCATCCCAACTTGAAAACGGAGAATGTGAAATTGCGAGATAACACGGCCTTCCTGCCTGTGGAAGGTCGAAATGGTTCAAAGCAGTACCCTAAAATCTTCTTGCAGTATCTTACTGCTGTTCACGGAGTTGCGGGAAATTTTAGGGCTAGGGATGATCTGTATGCTAAGCTGAAGAAACCGAATCTCACGTTGTGGGATACAGCGTATTCGTCTTGGGAAGGGAATAGCTGTCAAAGGCAAATTGACCTCATAGGCGCTAGCATGGTGGACTTGCTAGTGTTGAGGGTCTATATGCATGGCAGTTACTCCAACAACGCTGTTAGTGAGGCTGTTCTGGTCCGGAACGTGATCACTCATTTGAATCAGTGGAAACTGAAGAGGGACAAGGACCATTTTCACAAGACTGAGCTCTTAGAGATTGTTTATGAATGCTTCCCAGACATCTGCTTCAAGCTGTTTGATTTCTGTCGGTTTTGTGGAGTCGATATTAACTTCGCAAAACTCCGCAAATTTTTCAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

23.82

Weight (kDa)

9.57

Isoelectric Point (pI)

27.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 13
AccIII TCCGGA 1 cut(s) 432
AciI CCGC 2 cut(s) 224, 598
AcsI RAATTY 2 cut(s) 229, 602
AcuI CTGAAG 2 cut(s) 284, 488
AdeI CACNNNGTG 1 cut(s) 285
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 2 cut(s) 151, 155
AgsI TTSAA 5 cut(s) 106, 171, 454, 544, 610
AluBI AGCT 5 cut(s) 262, 321, 502, 547, 614
AluI AGCT 5 cut(s) 262, 321, 502, 547, 614
Alw21I GWGCWC 1 cut(s) 504
Aor13HI TCCGGA 1 cut(s) 432
AoxI GGCC 1 cut(s) 138
ApoI RAATTY 2 cut(s) 229, 602
Asp700I GAANNNNTTC 1 cut(s) 166
AspLEI GCGC 1 cut(s) 350
AspS9I GGNCC 2 cut(s) 430, 481
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 34
AsuNHI GCTAGC 1 cut(s) 350
AvaII GGWCC 2 cut(s) 430, 481
BanII GRGCYC 1 cut(s) 504
Bbv12I GWGCWC 1 cut(s) 504
BccI CCATC 1 cut(s) 102
BceAI ACGGC 1 cut(s) 153
BciVI GTATCC 2 cut(s) 75, 283
BclI TGATCA 1 cut(s) 441
BcnI CCSGG 1 cut(s) 38
BfaI CTAG 3 cut(s) 240, 351, 368
BfoI RGCGCY 1 cut(s) 351
BfuAI ACCTGC 1 cut(s) 13
BfuI GTATCC 2 cut(s) 75, 283
BglII AGATCT 1 cut(s) 85
BlpI GCTNAGC 1 cut(s) 258
Bme1390I CCNGG 1 cut(s) 38
Bme18I GGWCC 2 cut(s) 430, 481
BmgT120I GGNCC 2 cut(s) 430, 481
BmrFI CCNGG 1 cut(s) 38
BmtI GCTAGC 1 cut(s) 354
Bpu1102I GCTNAGC 1 cut(s) 258
BpuMI CCSGG 1 cut(s) 38
BsaWI WCCGGW 1 cut(s) 432
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 155
BseAI TCCGGA 1 cut(s) 432
BseGI GGATG 2 cut(s) 94, 250
BseLI CCNNNNNNNGG 2 cut(s) 151, 155
BseMII CTCAG 1 cut(s) 489
BsgI GTGCAG 1 cut(s) 41
BshFI GGCC 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 504
BsiSI CCGG 2 cut(s) 37, 433
BslFI GGGAC 1 cut(s) 488
BslI CCNNNNNNNGG 2 cut(s) 151, 155
BsmFI GGGAC 1 cut(s) 488
BsmI GAATGC 1 cut(s) 527
BsnI GGCC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 504
Bsp13I TCCGGA 1 cut(s) 432
Bsp143I GATC 3 cut(s) 85, 247, 441
Bsp1720I GCTNAGC 1 cut(s) 258
BspACI CCGC 2 cut(s) 224, 598
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 1 cut(s) 490
BspEI TCCGGA 1 cut(s) 432
BspMI ACCTGC 1 cut(s) 13
BspOI GCTAGC 1 cut(s) 354
BssMI GATC 3 cut(s) 85, 247, 441
Bst6I CTCTTC 2 cut(s) 2, 464
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 3 cut(s) 258, 498, 505
BstEII GGTNACC 1 cut(s) 40
BstENI CCTNNNNNAGG 1 cut(s) 153
BstF5I GGATG 2 cut(s) 94, 250
BstH2I RGCGCY 1 cut(s) 351
BstHHI GCGC 1 cut(s) 350
BstKTI GATC 3 cut(s) 88, 250, 444
BstMBI GATC 3 cut(s) 85, 247, 441
BstPI GGTNACC 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BsuI GTATCC 2 cut(s) 75, 283
BsuRI GGCC 1 cut(s) 140
BtsCI GGATG 2 cut(s) 94, 250
BtsIMutI CAGTG 1 cut(s) 464
BveI ACCTGC 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 352
CfoI GCGC 1 cut(s) 350
Cfr13I GGNCC 2 cut(s) 430, 481
Csp6I GTAC 1 cut(s) 178
CviAII CATG 2 cut(s) 355, 389
CviJI RGCY 9 cut(s) 36, 140, 239, 262, 321, 422, 502, 547, 614
CviKI_1 RGCY 9 cut(s) 36, 140, 239, 262, 321, 422, 502, 547, 614
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 3 cut(s) 258, 498, 505
DpnI GATC 3 cut(s) 87, 249, 443
DpnII GATC 3 cut(s) 85, 247, 441
DraIII CACNNNGTG 1 cut(s) 285
Eam1104I CTCTTC 2 cut(s) 2, 464
EarI CTCTTC 2 cut(s) 2, 464
Ecl136II GAGCTC 1 cut(s) 502
Eco24I GRGCYC 1 cut(s) 504
Eco47I GGWCC 2 cut(s) 430, 481
Eco53kI GAGCTC 1 cut(s) 502
Eco57I CTGAAG 2 cut(s) 284, 488
Eco91I GGTNACC 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 502
EcoNI CCTNNNNNAGG 1 cut(s) 153
EcoO65I GGTNACC 1 cut(s) 40
EcoT22I ATGCAT 1 cut(s) 390
EcoT38I GRGCYC 1 cut(s) 504
FaeI CATG 2 cut(s) 358, 392
FaiI YATR 7 cut(s) 255, 344, 356, 384, 386, 390, 519
FaqI GGGAC 1 cut(s) 488
FatI CATG 2 cut(s) 354, 388
FauI CCCGC 1 cut(s) 217
FbaI TGATCA 1 cut(s) 441
FokI GGATG 2 cut(s) 81, 257
FriOI GRGCYC 1 cut(s) 504
FspBI CTAG 3 cut(s) 240, 351, 368
GlaI GCGC 1 cut(s) 349
HaeII RGCGCY 1 cut(s) 351
HaeIII GGCC 1 cut(s) 140
HapII CCGG 2 cut(s) 37, 433
HhaI GCGC 1 cut(s) 350
Hin1II CATG 2 cut(s) 358, 392
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HindIII AAGCTT 1 cut(s) 612
HinfI GANTC 3 cut(s) 274, 454, 573
HpaII CCGG 2 cut(s) 37, 433
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 214, 361
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 1 cut(s) 433
Hpy8I GTNNAC 2 cut(s) 214, 361
HpyAV CCTTC 3 cut(s) 149, 151, 305
HpyCH4IV ACGT 2 cut(s) 281, 438
HpyCH4V TGCA 3 cut(s) 22, 196, 388
HpyF3I CTNAG 3 cut(s) 258, 498, 505
HpySE526I ACGT 2 cut(s) 281, 438
Hsp92II CATG 2 cut(s) 358, 392
HspAI GCGC 1 cut(s) 348
Kpn2I TCCGGA 1 cut(s) 432
Ksp22I TGATCA 1 cut(s) 441
Kzo9I GATC 3 cut(s) 85, 247, 441
LpnPI CCDG 8 cut(s) 8, 46, 50, 158, 162, 413, 446, 543
MaeI CTAG 3 cut(s) 240, 351, 368
MaeII ACGT 2 cut(s) 281, 438
MaeIII GTNAC 2 cut(s) 40, 395
MalI GATC 3 cut(s) 87, 249, 443
MboI GATC 3 cut(s) 85, 247, 441
MboII GAAGA 4 cut(s) 19, 181, 277, 481
MflI RGATCY 1 cut(s) 85
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 5 cut(s) 69, 122, 229, 333, 602
MlyI GAGTC 1 cut(s) 582
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 4 cut(s) 350, 369, 412, 465
Mph1103I ATGCAT 1 cut(s) 390
MroI TCCGGA 1 cut(s) 432
MroXI GAANNNNTTC 1 cut(s) 166
MseI TTAA 1 cut(s) 582
MspI CCGG 2 cut(s) 37, 433
MspR9I CCNGG 1 cut(s) 38
Mva1269I GAATGC 1 cut(s) 527
NciI CCSGG 1 cut(s) 38
NdeII GATC 3 cut(s) 85, 247, 441
NheI GCTAGC 1 cut(s) 350
NlaIII CATG 2 cut(s) 358, 392
NmuCI GTSAC 1 cut(s) 40
NsiI ATGCAT 1 cut(s) 390
PctI GAATGC 1 cut(s) 527
PdmI GAANNNNTTC 1 cut(s) 166
PfeI GAWTC 2 cut(s) 274, 454
PleI GAGTC 1 cut(s) 581
PpsI GAGTC 1 cut(s) 581
Psp124BI GAGCTC 1 cut(s) 504
PspEI GGTNACC 1 cut(s) 40
PspPI GGNCC 2 cut(s) 430, 481
PsuI RGATCY 1 cut(s) 85
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SacI GAGCTC 1 cut(s) 504
SaqAI TTAA 1 cut(s) 582
Sau3AI GATC 3 cut(s) 85, 247, 441
Sau96I GGNCC 2 cut(s) 430, 481
SchI GAGTC 1 cut(s) 582
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 1 cut(s) 504
SinI GGWCC 2 cut(s) 430, 481
Sse9I AATT 5 cut(s) 69, 122, 229, 333, 602
SsiI CCGC 2 cut(s) 224, 598
SspMI CTAG 3 cut(s) 240, 351, 368
SstI GAGCTC 1 cut(s) 504
StyD4I CCNGG 1 cut(s) 36
TaiI ACGT 2 cut(s) 284, 441
TaqI TCGA 3 cut(s) 29, 160, 576
TasI AATT 5 cut(s) 69, 122, 229, 333, 602
TfiI GAWTC 2 cut(s) 274, 454
Tru1I TTAA 1 cut(s) 582
Tru9I TTAA 1 cut(s) 582
TscAI CASTG 1 cut(s) 464
TseFI GTSAC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 534
TspGWI ACGGA 2 cut(s) 125, 231
TspRI CASTG 1 cut(s) 464
VpaK11BI GGWCC 2 cut(s) 430, 481
XagI CCTNNNNNAGG 1 cut(s) 153
XapI RAATTY 2 cut(s) 229, 602
XmnI GAANNNNTTC 1 cut(s) 166
XspI CTAG 3 cut(s) 240, 351, 368
Zsp2I ATGCAT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.