Rh2BG061100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000544
Physical Location & Seq
Reverse (-)
4613710 .. 4629040
15331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG061100.1

Sequence Viewer

Length: 522 bp
ATGCGCAACCGTTTAGTGACTTATAATGGAACTGTACAGCGCTGGGAAGCAGCTTACAATGAATGGGAGAAAACAGTCTATCCGGAGAAAATAGATTTAGAACAGGCTTGCAGTAAAGATCCCTGGGCTTTAAAAGTTTTCAAACATACGACAACATATAATAATACTCCAGCTAGCCGAGTGAAGCTTGCCCGCAACATAATCATACATTTGAACGACCATCGGATTGGCAAGAAGCAATCTATTTACACTTCATACGAGCTTGGCGCTCTGGTGGATGAGCTATTCCCCAACCTCAGCTCTAGATTATTCGAGTTTCTATGGAAGCAACGCATCAACCTGGACTTCAAGAGGTCCAGGAACACTTTCAATGTAGGCTACTTTCTTAATGTTGAGTCTGATTTTCCAAATCTAATTTCGCAGAGACTCGTTGGTTTTATGATGGAAGAGCCTTCTGGAGGTCCAACTGTCGGAAGTGAGTATAGAAAGAGTGTCATGTTGGAAGTAGAAGCGCGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

20.29

Weight (kDa)

9.3

Isoelectric Point (pI)

35.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 24
Acc16I TGCGCA 1 cut(s) 5
AccII CGCG 1 cut(s) 514
AccIII TCCGGA 1 cut(s) 82
AciI CCGC 2 cut(s) 193, 514
AclWI GGATC 1 cut(s) 113
AfaI GTAC 1 cut(s) 36
AfeI AGCGCT 1 cut(s) 41
AfiI CCNNNNNNNGG 2 cut(s) 458, 470
AgsI TTSAA 4 cut(s) 142, 214, 349, 370
AjnI CCWGG 3 cut(s) 122, 339, 356
AjuI GAANNNNNNNTTGG 2 cut(s) 400, 432
AluBI AGCT 6 cut(s) 53, 173, 187, 262, 283, 300
AluI AGCT 6 cut(s) 53, 173, 187, 262, 283, 300
Alw26I GTCTC 1 cut(s) 418
AlwI GGATC 1 cut(s) 113
Aor13HI TCCGGA 1 cut(s) 82
Aor51HI AGCGCT 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 365
AspLEI GCGC 4 cut(s) 6, 42, 269, 514
AspS9I GGNCC 2 cut(s) 354, 461
AsuNHI GCTAGC 1 cut(s) 173
AvaII GGWCC 2 cut(s) 354, 461
BbvCI CCTCAGC 1 cut(s) 296
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 228, 436
BciT130I CCWGG 3 cut(s) 124, 341, 358
BcoDI GTCTC 1 cut(s) 418
BfaI CTAG 2 cut(s) 174, 303
BfoI RGCGCY 2 cut(s) 43, 270
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 3 cut(s) 124, 341, 358
Bme18I GGWCC 2 cut(s) 354, 461
BmgT120I GGNCC 2 cut(s) 354, 461
BmrFI CCNGG 3 cut(s) 124, 341, 358
BmsI GCATC 1 cut(s) 342
BmtI GCTAGC 1 cut(s) 177
BpmI CTGGAG 2 cut(s) 153, 477
Bpu10I CCTNAGC 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 122, 123
BsaWI WCCGGW 1 cut(s) 82
Bsc4I CCNNNNNNNGG 2 cut(s) 458, 470
BseAI TCCGGA 1 cut(s) 82
BseBI CCWGG 3 cut(s) 124, 341, 358
BseDI CCNNGG 2 cut(s) 122, 123
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 2 cut(s) 458, 470
BseMII CTCAG 1 cut(s) 310
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 42
Bsh1236I CGCG 1 cut(s) 514
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 2 cut(s) 458, 470
BsmAI GTCTC 1 cut(s) 418
Bsp13I TCCGGA 1 cut(s) 82
Bsp1407I TGTACA 1 cut(s) 34
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 2 cut(s) 193, 514
BspCNI CTCAG 1 cut(s) 309
BspEI TCCGGA 1 cut(s) 82
BspFNI CGCG 1 cut(s) 514
BspOI GCTAGC 1 cut(s) 177
BspPI GGATC 1 cut(s) 113
BspQI GCTCTTC 1 cut(s) 441
BsrGI TGTACA 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 122, 123
BssMI GATC 1 cut(s) 118
Bst2UI CCWGG 3 cut(s) 124, 341, 358
Bst4CI ACNGT 4 cut(s) 11, 34, 76, 469
Bst6I CTCTTC 1 cut(s) 441
BstAUI TGTACA 1 cut(s) 34
BstC8I GCNNGC 4 cut(s) 109, 175, 189, 193
BstDEI CTNAG 1 cut(s) 296
BstENI CCTNNNNNAGG 1 cut(s) 456
BstF5I GGATG 1 cut(s) 283
BstFNI CGCG 1 cut(s) 514
BstH2I RGCGCY 2 cut(s) 43, 270
BstHHI GCGC 4 cut(s) 6, 42, 269, 514
BstKTI GATC 1 cut(s) 121
BstMAI GTCTC 1 cut(s) 418
BstMBI GATC 1 cut(s) 118
BstNI CCWGG 3 cut(s) 124, 341, 358
BstSCI CCNGG 3 cut(s) 122, 339, 356
BstUI CGCG 1 cut(s) 514
BstV1I GCAGC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 118
BstXI CCANNNNNNTGG 1 cut(s) 227
BstYI RGATCY 1 cut(s) 118
BtsCI GGATG 1 cut(s) 283
Cac8I GCNNGC 4 cut(s) 109, 175, 189, 193
CfoI GCGC 4 cut(s) 6, 42, 269, 514
Cfr13I GGNCC 2 cut(s) 354, 461
Csp6I GTAC 1 cut(s) 35
CviAII CATG 1 cut(s) 496
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 1 cut(s) 296
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
DraI TTTAAA 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
Eco47I GGWCC 2 cut(s) 354, 461
Eco47III AGCGCT 1 cut(s) 41
EcoNI CCTNNNNNAGG 1 cut(s) 456
EcoRII CCWGG 3 cut(s) 122, 339, 356
FaeI CATG 1 cut(s) 499
FatI CATG 1 cut(s) 495
FauI CCCGC 1 cut(s) 200
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 2 cut(s) 174, 303
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 4 cut(s) 5, 41, 268, 513
GluI GCNGC 1 cut(s) 51
GsaI CCCAGC 1 cut(s) 46
GsuI CTGGAG 2 cut(s) 153, 477
HaeII RGCGCY 2 cut(s) 43, 270
HapII CCGG 1 cut(s) 83
HhaI GCGC 4 cut(s) 6, 42, 269, 514
Hin1II CATG 1 cut(s) 499
Hin6I GCGC 4 cut(s) 4, 40, 267, 512
HinP1I GCGC 4 cut(s) 4, 40, 267, 512
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 2 cut(s) 395, 426
HpaII CCGG 1 cut(s) 83
Hpy188I TCNGA 3 cut(s) 225, 400, 473
Hpy188III TCNNGA 4 cut(s) 83, 303, 349, 456
HpyAV CCTTC 1 cut(s) 462
HpyCH4III ACNGT 4 cut(s) 11, 34, 76, 469
HpyCH4V TGCA 1 cut(s) 111
HpyF3I CTNAG 1 cut(s) 296
Hsp92II CATG 1 cut(s) 499
HspAI GCGC 4 cut(s) 4, 40, 267, 512
Kpn2I TCCGGA 1 cut(s) 82
Kzo9I GATC 1 cut(s) 118
LguI GCTCTTC 1 cut(s) 441
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 342
MaeI CTAG 2 cut(s) 174, 303
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 1 cut(s) 458
MflI RGATCY 1 cut(s) 118
MluCI AATT 1 cut(s) 414
MlyI GAGTC 2 cut(s) 404, 420
MmeI TCCRAC 3 cut(s) 451, 480, 488
MnlI CCTC 3 cut(s) 305, 345, 452
MroI TCCGGA 1 cut(s) 82
MroXI GAANNNNTTC 1 cut(s) 365
MseI TTAA 2 cut(s) 131, 387
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 3 cut(s) 124, 341, 358
MvaI CCWGG 3 cut(s) 124, 341, 358
MvnI CGCG 1 cut(s) 514
NdeII GATC 1 cut(s) 118
NheI GCTAGC 1 cut(s) 173
NlaIII CATG 1 cut(s) 499
NmeAIII GCCGAG 1 cut(s) 203
NmuCI GTSAC 1 cut(s) 16
NsbI TGCGCA 1 cut(s) 5
PasI CCCWGGG 1 cut(s) 123
PciSI GCTCTTC 1 cut(s) 441
PdmI GAANNNNTTC 1 cut(s) 365
PfoI TCCNGGA 1 cut(s) 356
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 2 cut(s) 403, 420
PpsI GAGTC 2 cut(s) 403, 420
PsiI TTATAA 1 cut(s) 24
Psp6I CCWGG 3 cut(s) 122, 339, 356
PspFI CCCAGC 1 cut(s) 42
PspGI CCWGG 3 cut(s) 122, 339, 356
PspPI GGNCC 2 cut(s) 354, 461
PsuI RGATCY 1 cut(s) 118
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 441
SaqAI TTAA 2 cut(s) 131, 387
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 2 cut(s) 354, 461
SchI GAGTC 2 cut(s) 404, 420
ScrFI CCNGG 3 cut(s) 124, 341, 358
SfaNI GCATC 1 cut(s) 342
SinI GGWCC 2 cut(s) 354, 461
Sse9I AATT 1 cut(s) 414
SsiI CCGC 2 cut(s) 193, 514
SspMI CTAG 2 cut(s) 174, 303
StyD4I CCNGG 3 cut(s) 122, 339, 356
TaaI ACNGT 4 cut(s) 11, 34, 76, 469
TaqI TCGA 1 cut(s) 312
TasI AATT 1 cut(s) 414
TatI WGTACW 1 cut(s) 34
Tru1I TTAA 2 cut(s) 131, 387
Tru9I TTAA 2 cut(s) 131, 387
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 75, 243
VpaK11BI GGWCC 2 cut(s) 354, 461
XagI CCTNNNNNAGG 1 cut(s) 456
XbaI TCTAGA 1 cut(s) 302
XmnI GAANNNNTTC 1 cut(s) 365
XspI CTAG 2 cut(s) 174, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.