Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000544

Physical Location & Seq

Genomic Coordinates Reverse (-)

3827439 .. 3832000

Gene Structure 4562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G004030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGGAGCAGAAGAAGCCAGTCGGGTCCCTGCTTCCGAGTTGCGTGGAAGTCAGGATCACGTCGCAATTCTCCCCGCAGTTGGCTCTGGTCTTGATGAGGATAAGGATTACCAGAATAAATTCAGGGAGGCCGTGGAAGCGTTTCTTGGATTTAGTGGAACACATCACCACGATAGAGACAACTTCTTCCGACGGCTTCAAACCCCCCTACCGAGGGAAAGATTCGCTGCTCTTTATTTTCATCGTTTACTGCTCAATGAAGCACAGAGGGCCGATTTTCCGGCTGATACCGTAGAGAACCTCAGGAATAGTGTTGTTCGTTATAGGGGCGTGAATTATAGTTTTGAGGATGGCTACAACATCTGGGAGATGATCGAGTGGAGGGGACAGTACAATTTAGCAGTTACCACTCAGAAGAACAAGTGGTTTAGAGATGCATACAACTTCCGAACCTACAAGGACACTGCCATTGATGAGGCGCAGCTGGTCCGAAATACTACTCGACATTTGAATGACAACAGGAATGTTAAGAGTTTTTACTGCACTAAGCCCTACGTTGGTCCACATAAAAGAGTAGAGCTTTGGAATGATATCCGGGATTGTATCGAAGACAATCGCACCAACGTAGGGCTTAGTGCAATAAAAACTCTTAACATTCTTGTTGTCATTCAAATGTCGAGTAATATTTCGGACCAGCTGCGCCTCATCAAGGGCAGTGTCCTTGTAGGTTCGGAAGTTATTTTGGTAAAGATTGGTCAACAAGTACCAGTTGCTAGCATGGATAGTAGTGGGAAACTAAACTGGGCCAAGCATAATGAAATCCAAACTGTGAATATCAAAAGTGTGGGATCACATTTTGAGATTACAGATGGAGAAAGATTACCGTTGGCCGTGAAGGAGTTAGGAAACTGTGATCTTTATCCTCAAGCATCTATGTTTGATGAATCTTTAATCCAATGCAGATTGTTTAGACGAATTGATGTGAATGTTAAGAGGGATGTAGTCTCTTCTTATTTGGACAGTGGAAGGGCAGTCGACGAACTAGGTGTTGAGGATGTTTTTGAGCTCCTTTTGGAGAGAAATGAGCGTGTCCAAACTGGATTATGGGTTGGCGACTGTTTTGTTTGTATTAGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_WDAD WD40

Protein Analysis

379

Amino Acids

43.48

Weight (kDa)

6.04

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04860 FvH4_1g04920 FvH4_1g05010 FvH4_1g07320 FvH4_5g09280 FvH4_5g09280 FvH4_5g09280
rosa_chinensis	RchiOBHm_Chr2g0088841 RchiOBHm_Chr2g0089881 RchiOBHm_Chr2g0089901 RchiOBHm_Chr2g0089911 RchiOBHm_Chr2g0089921 RchiOBHm_Chr2g0090621 RchiOBHm_Chr2g0091091 RchiOBHm_Chr5g0019481 RchiOBHm_Chr5g0019491
rosa_laevigata	RLG00000016078 RLG00000016112 RLG00000016113 RLG00000016126 RLG00000016176 RLG00000016179 RLG00000016217 RLG00000019062 RLG00000032446 RLG00000032447 RLG00000032450
rosa_multiflora	Rmu_sc0000259.1_g000018 Rmu_sc0000779.1_g000022 Rmu_sc0002515.1_g000014 Rmu_sc0002759.1_g000046 Rmu_sc0002986.1_g000072 Rmu_sc0005230.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058560 Rroxscaffold_1G00058570 Rroxscaffold_1G00074340 Rroxscaffold_2G00150150 Rroxscaffold_2G00150970 Rroxscaffold_2G00151500 Rroxscaffold_4G00332590
rosa_rugosa	Rorug01G0127100 Rorug02G0009600 Rorug05G0051100 Rorug07G0229300
rosa_samantha	Rh2AG050300 Rh2AG050400 Rh2AG055000 Rh2AG055100 Rh2AG058600 Rh2AG058900 Rh2AG062100 Rh2BG048900 Rh2BG053100 Rh2BG053900 Rh2BG057400 Rh2BG061100 Rh2CG051100 Rh2CG055100 Rh2CG056100 Rh2CG059300 Rh2CG063200 Rh2DG049400 Rh2DG050300 Rh2DG050400 Rh2DG050500 Rh2DG055300 Rh2DG061700 Rh2DG362200 Rh4AG113200 Rh5AG141500 Rh5AG142000 Rh5AG142100 Rh5BG140400 Rh5BG140500 Rh5CG152300 Rh5CG152400 Rh5CG152500 Rh5CG152600 Rh5DG141100 Rh7DG375200
rosa_wichuraiana	Rw2G004030 Rw2G004800 Rw2G005060 Rw7G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1035
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	2 cut(s)	63, 856
AcoI	YGGCCR	1 cut(s)	888
AcsI	RAATTY	1 cut(s)	119
AfaI	GTAC	2 cut(s)	392, 765
AfiI	CCNNNNNNNGG	6 cut(s)	80, 213, 214, 557, 627, 709
AgsI	TTSAA	3 cut(s)	200, 511, 671
AjiI	CACGTC	1 cut(s)	61
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AluBI	AGCT	4 cut(s)	484, 580, 697, 1066
AluI	AGCT	4 cut(s)	484, 580, 697, 1066
Alw21I	GWGCWC	1 cut(s)	1068
Alw26I	GTCTC	2 cut(s)	171, 1009
AlwI	GGATC	2 cut(s)	63, 856
AoxI	GGCC	4 cut(s)	129, 270, 804, 888
ApeKI	GCWGC	3 cut(s)	227, 481, 697
ApoI	RAATTY	1 cut(s)	119
Asp700I	GAANNNNTTC	2 cut(s)	119, 141
AspLEI	GCGC	2 cut(s)	481, 702
AspS9I	GGNCC	6 cut(s)	25, 270, 487, 560, 691, 804
AsuC2I	CCSGG	1 cut(s)	596
AsuHPI	GGTGA	1 cut(s)	158
AsuNHI	GCTAGC	1 cut(s)	773
AvaII	GGWCC	4 cut(s)	25, 487, 560, 691
AxyI	CCTNAGG	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	1068
BbsI	GAAGAC	1 cut(s)	615
Bbv12I	GWGCWC	1 cut(s)	1068
BbvI	GCAGC	3 cut(s)	214, 493, 684
BccI	CCATC	2 cut(s)	344, 863
BceAI	ACGGC	3 cut(s)	116, 209, 875
BcnI	CCSGG	1 cut(s)	596
BcoDI	GTCTC	2 cut(s)	171, 1009
BfaI	CTAG	2 cut(s)	774, 1043
BisI	GCNGC	3 cut(s)	228, 482, 698
BlsI	GCNGC	3 cut(s)	229, 483, 699
Bme1390I	CCNGG	1 cut(s)	596
Bme18I	GGWCC	4 cut(s)	25, 487, 560, 691
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	6 cut(s)	25, 270, 487, 560, 691, 804
BmiI	GGNNCC	2 cut(s)	26, 27
BmrFI	CCNGG	1 cut(s)	596
BmrI	ACTGGG	1 cut(s)	811
BmsI	GCATC	2 cut(s)	424, 938
BmtI	GCTAGC	1 cut(s)	777
BmuI	ACTGGG	1 cut(s)	811
BpiI	GAAGAC	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	909
BpuMI	CCSGG	1 cut(s)	596
BsaBI	GATNNNNATC	1 cut(s)	918
BsaJI	CCNNGG	2 cut(s)	132, 212
Bsc4I	CCNNNNNNNGG	6 cut(s)	80, 213, 214, 557, 627, 709
Bse1I	ACTGG	4 cut(s)	18, 767, 806, 1102
Bse21I	CCTNAGG	1 cut(s)	302
Bse8I	GATNNNNATC	1 cut(s)	918
BseDI	CCNNGG	2 cut(s)	132, 212
BseGI	GGATG	3 cut(s)	355, 1003, 1060
BseJI	GATNNNNATC	1 cut(s)	918
BseLI	CCNNNNNNNGG	6 cut(s)	80, 213, 214, 557, 627, 709
BseMII	CTCAG	2 cut(s)	316, 425
BseNI	ACTGG	4 cut(s)	18, 767, 806, 1102
BseXI	GCAGC	3 cut(s)	214, 493, 684
BsgI	GTGCAG	1 cut(s)	526
BshFI	GGCC	4 cut(s)	131, 272, 806, 890
BsiHKAI	GWGCWC	1 cut(s)	1068
BsiSI	CCGG	2 cut(s)	281, 595
BslFI	GGGAC	2 cut(s)	11, 399
BslI	CCNNNNNNNGG	6 cut(s)	80, 213, 214, 557, 627, 709
BsmAI	GTCTC	2 cut(s)	171, 1009
BsmFI	GGGAC	2 cut(s)	11, 399
BsnI	GGCC	4 cut(s)	131, 272, 806, 890
Bsp1286I	GDGCHC	1 cut(s)	1068
Bsp143I	GATC	4 cut(s)	55, 372, 848, 913
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	4 cut(s)	131, 272, 806, 890
BspCNI	CTCAG	2 cut(s)	315, 424
BspLI	GGNNCC	2 cut(s)	26, 27
BspOI	GCTAGC	1 cut(s)	777
BspPI	GGATC	2 cut(s)	63, 856
BsrI	ACTGG	4 cut(s)	18, 767, 806, 1102
BssECI	CCNNGG	2 cut(s)	132, 212
BssMI	GATC	4 cut(s)	55, 372, 848, 913
Bst4CI	ACNGT	7 cut(s)	292, 390, 829, 885, 911, 1022, 1118
Bst6I	CTCTTC	1 cut(s)	1012
BstC8I	GCNNGC	1 cut(s)	775
BstDEI	CTNAG	4 cut(s)	302, 411, 546, 632
BstDSI	CCRYGG	1 cut(s)	132
BstENI	CCTNNNNNAGG	1 cut(s)	707
BstF5I	GGATG	3 cut(s)	355, 1003, 1060
BstHHI	GCGC	2 cut(s)	481, 702
BstKTI	GATC	4 cut(s)	58, 375, 851, 916
BstMAI	GTCTC	2 cut(s)	171, 1009
BstMBI	GATC	4 cut(s)	55, 372, 848, 913
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 137, 269
BstSCI	CCNGG	1 cut(s)	594
BstV1I	GCAGC	3 cut(s)	214, 493, 684
BstV2I	GAAGAC	1 cut(s)	615
Bsu36I	CCTNAGG	1 cut(s)	302
BsuRI	GGCC	4 cut(s)	131, 272, 806, 890
BtgI	CCRYGG	1 cut(s)	132
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	3 cut(s)	355, 1003, 1060
BtsI	GCAGTG	2 cut(s)	462, 721
BtsIMutI	CAGTG	3 cut(s)	462, 721, 1027
Cac8I	GCNNGC	1 cut(s)	775
CfoI	GCGC	2 cut(s)	481, 702
Cfr13I	GGNCC	6 cut(s)	25, 270, 487, 560, 691, 804
Csp6I	GTAC	2 cut(s)	391, 764
CviAII	CATG	1 cut(s)	778
CviQI	GTAC	2 cut(s)	391, 764
DdeI	CTNAG	4 cut(s)	302, 411, 546, 632
DpnI	GATC	4 cut(s)	57, 374, 850, 915
DpnII	GATC	4 cut(s)	55, 372, 848, 913
EaeI	YGGCCR	1 cut(s)	888
Eam1104I	CTCTTC	1 cut(s)	1012
EarI	CTCTTC	1 cut(s)	1012
Ecl136II	GAGCTC	1 cut(s)	1066
Eco24I	GRGCYC	1 cut(s)	1068
Eco32I	GATATC	1 cut(s)	592
Eco47I	GGWCC	4 cut(s)	25, 487, 560, 691
Eco53kI	GAGCTC	1 cut(s)	1066
Eco81I	CCTNAGG	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	1066
EcoNI	CCTNNNNNAGG	1 cut(s)	707
EcoO109I	RGGNCCY	1 cut(s)	25
EcoRV	GATATC	1 cut(s)	592
EcoT22I	ATGCAT	1 cut(s)	439
EcoT38I	GRGCYC	1 cut(s)	1068
FaeI	CATG	1 cut(s)	781
FaiI	YATR	8 cut(s)	324, 339, 439, 567, 779, 813, 935, 1105
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	2 cut(s)	11, 399
FatI	CATG	1 cut(s)	777
FauI	CCCGC	1 cut(s)	82
FblI	GTMKAC	1 cut(s)	1035
Fnu4HI	GCNGC	3 cut(s)	228, 482, 698
FokI	GGATG	3 cut(s)	362, 1010, 1067
FriOI	GRGCYC	1 cut(s)	1068
Fsp4HI	GCNGC	3 cut(s)	228, 482, 698
FspBI	CTAG	2 cut(s)	774, 1043
GlaI	GCGC	2 cut(s)	480, 701
GluI	GCNGC	3 cut(s)	228, 482, 698
HaeIII	GGCC	4 cut(s)	131, 272, 806, 890
HapII	CCGG	2 cut(s)	281, 595
HhaI	GCGC	2 cut(s)	481, 702
Hin1II	CATG	1 cut(s)	781
Hin6I	GCGC	2 cut(s)	479, 700
HinP1I	GCGC	2 cut(s)	479, 700
HincII	GTYRAC	2 cut(s)	758, 1036
HindII	GTYRAC	2 cut(s)	758, 1036
HinfI	GANTC	2 cut(s)	222, 944
HpaII	CCGG	2 cut(s)	281, 595
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	4 cut(s)	248, 563, 758, 1036
Hpy188I	TCNGA	7 cut(s)	37, 191, 414, 449, 491, 691, 733
Hpy188III	TCNNGA	3 cut(s)	53, 92, 304
Hpy8I	GTNNAC	4 cut(s)	248, 563, 758, 1036
Hpy99I	CGWCG	3 cut(s)	65, 195, 1040
HpyAV	CCTTC	2 cut(s)	889, 1020
HpyCH4III	ACNGT	7 cut(s)	292, 390, 829, 885, 911, 1022, 1118
HpyCH4IV	ACGT	3 cut(s)	60, 555, 624
HpyCH4V	TGCA	4 cut(s)	437, 543, 638, 960
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 137, 269
HpyF3I	CTNAG	4 cut(s)	302, 411, 546, 632
HpySE526I	ACGT	3 cut(s)	60, 555, 624
Hsp92II	CATG	1 cut(s)	781
HspAI	GCGC	2 cut(s)	479, 700
KflI	GGGWCCC	1 cut(s)	25
Kzo9I	GATC	4 cut(s)	55, 372, 848, 913
LmnI	GCTCC	2 cut(s)	5, 1071
Lsp1109I	GCAGC	3 cut(s)	214, 493, 684
LweI	GCATC	2 cut(s)	424, 938
MaeI	CTAG	2 cut(s)	774, 1043
MaeII	ACGT	3 cut(s)	60, 555, 624
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	4 cut(s)	57, 374, 850, 915
MboI	GATC	4 cut(s)	55, 372, 848, 913
MboII	GAAGA	5 cut(s)	23, 178, 427, 620, 999
MhlI	GDGCHC	1 cut(s)	1068
MluCI	AATT	5 cut(s)	66, 119, 334, 394, 975
MmeI	TCCRAC	1 cut(s)	214
Mph1103I	ATGCAT	1 cut(s)	439
MroXI	GAANNNNTTC	2 cut(s)	119, 141
MseI	TTAA	4 cut(s)	528, 651, 950, 990
MslI	CAYNNNNRTG	2 cut(s)	510, 671
MspA1I	CMGCKG	2 cut(s)	484, 697
MspI	CCGG	2 cut(s)	281, 595
MspR9I	CCNGG	1 cut(s)	596
MwoI	GCNNNNNNNGC	3 cut(s)	14, 137, 269
NciI	CCSGG	1 cut(s)	596
NdeII	GATC	4 cut(s)	55, 372, 848, 913
NheI	GCTAGC	1 cut(s)	773
NlaIII	CATG	1 cut(s)	781
NlaIV	GGNNCC	2 cut(s)	26, 27
NsiI	ATGCAT	1 cut(s)	439
PdmI	GAANNNNTTC	2 cut(s)	119, 141
PfeI	GAWTC	2 cut(s)	222, 944
PfoI	TCCNGGA	1 cut(s)	594
PkrI	GCNGC	3 cut(s)	229, 483, 699
PpuMI	RGGWCCY	1 cut(s)	25
Psp124BI	GAGCTC	1 cut(s)	1068
Psp5II	RGGWCCY	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	26, 27
PspPI	GGNCC	6 cut(s)	25, 270, 487, 560, 691, 804
PspPPI	RGGWCCY	1 cut(s)	25
PvuII	CAGCTG	2 cut(s)	484, 697
RsaI	GTAC	2 cut(s)	392, 765
RsaNI	GTAC	2 cut(s)	391, 764
RseI	CAYNNNNRTG	2 cut(s)	510, 671
SacI	GAGCTC	1 cut(s)	1068
SalI	GTCGAC	1 cut(s)	1034
SaqAI	TTAA	4 cut(s)	528, 651, 950, 990
SatI	GCNGC	3 cut(s)	228, 482, 698
Sau3AI	GATC	4 cut(s)	55, 372, 848, 913
Sau96I	GGNCC	6 cut(s)	25, 270, 487, 560, 691, 804
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	1 cut(s)	1068
SfaNI	GCATC	2 cut(s)	424, 938
SinI	GGWCC	4 cut(s)	25, 487, 560, 691
SmiMI	CAYNNNNRTG	2 cut(s)	510, 671
SmlI	CTYRAG	1 cut(s)	924
SmoI	CTYRAG	1 cut(s)	924
Sse9I	AATT	5 cut(s)	66, 119, 334, 394, 975
SsiI	CCGC	1 cut(s)	75
SspI	AATATT	1 cut(s)	685
SspMI	CTAG	2 cut(s)	774, 1043
SstI	GAGCTC	1 cut(s)	1068
StyD4I	CCNGG	1 cut(s)	594
TaaI	ACNGT	7 cut(s)	292, 390, 829, 885, 911, 1022, 1118
TaiI	ACGT	3 cut(s)	63, 558, 627
TaqI	TCGA	5 cut(s)	375, 502, 606, 677, 1035
TasI	AATT	5 cut(s)	66, 119, 334, 394, 975
TatI	WGTACW	1 cut(s)	390
TfiI	GAWTC	2 cut(s)	222, 944
Tru1I	TTAA	4 cut(s)	528, 651, 950, 990
Tru9I	TTAA	4 cut(s)	528, 651, 950, 990
TscAI	CASTG	3 cut(s)	469, 721, 1027
TseI	GCWGC	3 cut(s)	227, 481, 697
TspDTI	ATGAA	4 cut(s)	230, 273, 831, 957
TspRI	CASTG	3 cut(s)	469, 721, 1027
VpaK11BI	GGWCC	4 cut(s)	25, 487, 560, 691
XagI	CCTNNNNNAGG	1 cut(s)	707
XapI	RAATTY	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	1035
XmnI	GAANNNNTTC	2 cut(s)	119, 141
XspI	CTAG	2 cut(s)	774, 1043
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.