RLG00000032450

Paired amphipathic helix protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
15375617 .. 15377845
2229 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032450

Sequence Viewer

Length: 1185 bp
ATGGTGAAGCGGAAGCGTCACACCGGCGGCAAGCCTACGGAGGAGGAACTATGCGATTTCCCTGCCGTGGCAGTGTGGAATCTGCGGAACATAAAATTCGACCATGAAGGCTTGAAAGAAAACTGGACTGATGCTTATACCCGATGGGATGCTTTGCATCCCCGGGAGGGTGCAATAAACTTGATTCGGACCTGCAGGGAGAATGATTACTTCATGAGAGCTTACAAGTTCAAGCAATATGATAGTGATGCTGTCAAGGAAGCAGAGCTGGTTAGAAATGGCATTACGCACTTTAACGAGAATGTAATGAAAGACGTGCCCCCTCCTGATGATTTCTTCAACAAACGCCAAATAGGAGAGGTCGTTCTTGATCTCTTCCCAGATGTCTCCTTCAGACTGTTCGATTTTATGTGGGACAATGATGTGAATATGGACTTCACCATGTCCCGCACATGTTTCAGATATGCTGTTAAGAGTCTGAATGTAACGACCAAGCGTGTGGAAGAACTATTAGAAAAGATCAACAACAATACCATTAAGACTGAGAGTCCAATCCGTGTAGAAGAATACTTTACAGCTCTAAGGTGCATTGAGCGATTATATGGTGACCACGGGCTTGATGTGTTGGGTGTGTTGACGAAAAATGCTCCACTAGCTTTGCCTGTTATATTAACGCGCTTGAAGCGAAAGCAAGAAGAGTGGGCAAGGTGTCGCTCTGACTTTAACAAAATCTGGGGTGATATATATATGCGAAAAACTATCACAAGTCACTTAATCATCGTAGCTTCTACTTCAAGCAACAGGACTCAAAGAGCTTTAGCACCAAAGAATATTGAAAAGTTACTGTCTTCCATTGGTTTGCTATTGCTCTTTCCACTTGTAAAAATTAATTCTTACTTCCTCTTCCTCCCTGGATGGGGACAAATTTTTTCAGCCTTGTTGGTGGAGATTAAAGAGATGACTGAGAAGAAGCGGAAGGAAGATGATGTTCTTCTTGCTATTGCTGCTAGAAATAGACGACCTATTATTCCAAATTTGGAATTCGAGTACCCTGATCCGGACATCCATGAAGATCTGTATCAACTCATCAAATATTTTTGTGGAGAAATTGCAGAGGATACTGAAGATGTTGTGAAGGCAAAAACTCATGCTGGCAAAAATGGTGCTGGGAGCGGGGGAGAGTGA

Protein Analysis

395

Amino Acids

45.69

Weight (kDa)

6.74

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 200
AccBSI CCGCTC 1 cut(s) 1173
AccII CGCG 1 cut(s) 676
AccIII TCCGGA 1 cut(s) 1057
AciI CCGC 6 cut(s) 10, 27, 85, 448, 973, 1173
AclWI GGATC 1 cut(s) 1049
AcsI RAATTY 4 cut(s) 95, 924, 1033, 1040
AcuI CTGAAG 2 cut(s) 376, 1143
AfaI GTAC 1 cut(s) 1049
AfiI CCNNNNNNNGG 5 cut(s) 67, 167, 916, 917, 1057
AflIII ACRYGT 1 cut(s) 452
AgsI TTSAA 6 cut(s) 115, 232, 340, 682, 795, 836
AhdI GACNNNNNGTC 1 cut(s) 546
AjiI CACGTC 1 cut(s) 316
AjnI CCWGG 1 cut(s) 910
AloI GAACNNNNNNTCC 2 cut(s) 348, 380
AluBI AGCT 6 cut(s) 221, 268, 578, 656, 785, 815
AluI AGCT 6 cut(s) 221, 268, 578, 656, 785, 815
Alw26I GTCTC 1 cut(s) 391
AlwI GGATC 1 cut(s) 1049
Ama87I CYCGRG 1 cut(s) 162
Aor13HI TCCGGA 1 cut(s) 1057
ApeKI GCWGC 1 cut(s) 1004
ApoI RAATTY 4 cut(s) 95, 924, 1033, 1040
AseI ATTAAT 1 cut(s) 888
AspLEI GCGC 1 cut(s) 678
AspS9I GGNCC 1 cut(s) 189
AsuC2I CCSGG 2 cut(s) 163, 164
AsuHPI GGTGA 4 cut(s) 16, 430, 617, 749
AvaI CYCGRG 1 cut(s) 162
AvaII GGWCC 1 cut(s) 189
BaeGI GKGCMC 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 840
BbvI GCAGC 1 cut(s) 991
BccI CCATC 2 cut(s) 138, 909
BceAI ACGGC 1 cut(s) 50
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BciT130I CCWGG 1 cut(s) 912
BciVI GTATCC 1 cut(s) 1111
BcnI CCSGG 2 cut(s) 163, 164
BcoDI GTCTC 1 cut(s) 391
BfaI CTAG 2 cut(s) 653, 1008
BfmI CTRYAG 1 cut(s) 193
BfuAI ACCTGC 1 cut(s) 200
BfuI GTATCC 1 cut(s) 1111
BglII AGATCT 1 cut(s) 1072
BisI GCNGC 2 cut(s) 28, 1005
BlsI GCNGC 2 cut(s) 29, 1006
Bme1390I CCNGG 3 cut(s) 163, 164, 912
Bme18I GGWCC 1 cut(s) 189
BmeRI GACNNNNNGTC 1 cut(s) 546
BmeT110I CYCGRG 1 cut(s) 162
BmgBI CACGTC 1 cut(s) 316
BmgT120I GGNCC 1 cut(s) 189
BmrFI CCNGG 3 cut(s) 163, 164, 912
BmsI GCATC 4 cut(s) 121, 139, 166, 238
BpiI GAAGAC 1 cut(s) 840
BpuMI CCSGG 2 cut(s) 163, 164
BsaBI GATNNNNATC 1 cut(s) 1077
BsaJI CCNNGG 5 cut(s) 66, 161, 162, 610, 910
BsaWI WCCGGW 1 cut(s) 1057
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 5 cut(s) 67, 167, 916, 917, 1057
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 128
Bse8I GATNNNNATC 1 cut(s) 1077
BseAI TCCGGA 1 cut(s) 1057
BseBI CCWGG 1 cut(s) 912
BseDI CCNNGG 5 cut(s) 66, 161, 162, 610, 910
BseGI GGATG 4 cut(s) 154, 157, 920, 1062
BseJI GATNNNNATC 1 cut(s) 1077
BseLI CCNNNNNNNGG 5 cut(s) 67, 167, 916, 917, 1057
BseMII CTCAG 2 cut(s) 534, 954
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 321
BseXI GCAGC 1 cut(s) 991
BseYI CCCAGC 1 cut(s) 1166
Bsh1236I CGCG 1 cut(s) 676
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 3 cut(s) 24, 163, 1058
BslFI GGGAC 3 cut(s) 428, 430, 933
BslI CCNNNNNNNGG 5 cut(s) 67, 167, 916, 917, 1057
BsmAI GTCTC 1 cut(s) 391
BsmFI GGGAC 3 cut(s) 428, 430, 933
BsoBI CYCGRG 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 321
Bsp13I TCCGGA 1 cut(s) 1057
Bsp143I GATC 4 cut(s) 370, 519, 1054, 1072
BspACI CCGC 6 cut(s) 10, 27, 85, 448, 973, 1173
BspCNI CTCAG 2 cut(s) 535, 955
BspEI TCCGGA 1 cut(s) 1057
BspFNI CGCG 1 cut(s) 676
BspHI TCATGA 1 cut(s) 213
BspMAI CTGCAG 1 cut(s) 197
BspMI ACCTGC 1 cut(s) 200
BspPI GGATC 1 cut(s) 1049
BsrBI CCGCTC 1 cut(s) 1173
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 5 cut(s) 66, 161, 162, 610, 910
BssMI GATC 4 cut(s) 370, 519, 1054, 1072
Bst2UI CCWGG 1 cut(s) 912
Bst4CI ACNGT 2 cut(s) 399, 846
Bst6I CTCTTC 3 cut(s) 380, 690, 908
BstC8I GCNNGC 2 cut(s) 32, 1153
BstDEI CTNAG 3 cut(s) 543, 581, 963
BstDSI CCRYGG 2 cut(s) 66, 610
BstEII GGTNACC 1 cut(s) 605
BstF5I GGATG 4 cut(s) 154, 157, 920, 1062
BstFNI CGCG 1 cut(s) 676
BstHHI GCGC 1 cut(s) 678
BstKTI GATC 4 cut(s) 373, 522, 1057, 1075
BstMAI GTCTC 1 cut(s) 391
BstMBI GATC 4 cut(s) 370, 519, 1054, 1072
BstMWI GCNNNNNNNGC 3 cut(s) 653, 682, 1004
BstNI CCWGG 1 cut(s) 912
BstNSI RCATGY 1 cut(s) 456
BstPI GGTNACC 1 cut(s) 605
BstSCI CCNGG 3 cut(s) 161, 162, 910
BstSFI CTRYAG 1 cut(s) 193
BstSLI GKGCMC 1 cut(s) 321
BstUI CGCG 1 cut(s) 676
BstV1I GCAGC 1 cut(s) 991
BstV2I GAAGAC 1 cut(s) 840
BstX2I RGATCY 1 cut(s) 1072
BstXI CCANNNNNNTGG 1 cut(s) 499
BstYI RGATCY 1 cut(s) 1072
BsuI GTATCC 1 cut(s) 1111
BtgI CCRYGG 2 cut(s) 66, 610
BtrI CACGTC 1 cut(s) 316
BtsCI GGATG 4 cut(s) 154, 157, 920, 1062
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 78
BveI ACCTGC 1 cut(s) 200
Cac8I GCNNGC 2 cut(s) 32, 1153
CciI TCATGA 1 cut(s) 213
CfoI GCGC 1 cut(s) 678
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 189
Cfr9I CCCGGG 1 cut(s) 162
CseI GACGC 1 cut(s) 5
Csp6I GTAC 1 cut(s) 1048
CspCI CAANNNNNGTGG 4 cut(s) 639, 674, 680, 715
CviAII CATG 6 cut(s) 104, 214, 442, 453, 1067, 1148
CviQI GTAC 1 cut(s) 1048
DdeI CTNAG 3 cut(s) 543, 581, 963
DpnI GATC 4 cut(s) 372, 521, 1056, 1074
DpnII GATC 4 cut(s) 370, 519, 1054, 1072
DriI GACNNNNNGTC 1 cut(s) 546
Eam1104I CTCTTC 3 cut(s) 380, 690, 908
Eam1105I GACNNNNNGTC 1 cut(s) 546
EarI CTCTTC 3 cut(s) 380, 690, 908
Eco47I GGWCC 1 cut(s) 189
Eco57I CTGAAG 2 cut(s) 376, 1143
Eco88I CYCGRG 1 cut(s) 162
Eco91I GGTNACC 1 cut(s) 605
EcoO65I GGTNACC 1 cut(s) 605
EcoRI GAATTC 1 cut(s) 1040
EcoRII CCWGG 1 cut(s) 910
FaeI CATG 6 cut(s) 107, 217, 445, 456, 1070, 1151
FaqI GGGAC 3 cut(s) 428, 430, 933
FatI CATG 6 cut(s) 103, 213, 441, 452, 1066, 1147
FauI CCCGC 2 cut(s) 455, 1166
Fnu4HI GCNGC 2 cut(s) 28, 1005
FokI GGATG 4 cut(s) 144, 161, 927, 1049
Fsp4HI GCNGC 2 cut(s) 28, 1005
FspBI CTAG 2 cut(s) 653, 1008
GlaI GCGC 1 cut(s) 677
GluI GCNGC 2 cut(s) 28, 1005
GsaI CCCAGC 1 cut(s) 1170
HapII CCGG 3 cut(s) 24, 163, 1058
HgaI GACGC 1 cut(s) 5
HhaI GCGC 1 cut(s) 678
Hin1II CATG 6 cut(s) 107, 217, 445, 456, 1070, 1151
Hin6I GCGC 1 cut(s) 676
HinP1I GCGC 1 cut(s) 676
HincII GTYRAC 1 cut(s) 636
HindII GTYRAC 1 cut(s) 636
HinfI GANTC 5 cut(s) 79, 184, 475, 547, 805
HpaII CCGG 3 cut(s) 24, 163, 1058
HphI GGTGA 4 cut(s) 16, 430, 617, 749
Hpy166II GTNNAC 1 cut(s) 636
Hpy188I TCNGA 5 cut(s) 189, 395, 461, 480, 718
Hpy188III TCNNGA 4 cut(s) 214, 326, 368, 1058
Hpy8I GTNNAC 1 cut(s) 636
HpyAV CCTTC 4 cut(s) 101, 400, 970, 1129
HpyCH4III ACNGT 2 cut(s) 399, 846
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 5 cut(s) 157, 173, 195, 588, 1112
HpyF10VI GCNNNNNNNGC 3 cut(s) 653, 682, 1004
HpyF3I CTNAG 3 cut(s) 543, 581, 963
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 6 cut(s) 107, 217, 445, 456, 1070, 1151
HspAI GCGC 1 cut(s) 676
Kpn2I TCCGGA 1 cut(s) 1057
Kzo9I GATC 4 cut(s) 370, 519, 1054, 1072
LmnI GCTCC 2 cut(s) 652, 1170
Lsp1109I GCAGC 1 cut(s) 991
LweI GCATC 4 cut(s) 121, 139, 166, 238
MaeI CTAG 2 cut(s) 653, 1008
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 5 cut(s) 17, 484, 605, 767, 840
MalI GATC 4 cut(s) 372, 521, 1056, 1074
MbiI CCGCTC 1 cut(s) 1173
MboI GATC 4 cut(s) 370, 519, 1054, 1072
MflI RGATCY 1 cut(s) 1072
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 7 cut(s) 95, 885, 889, 924, 1033, 1040, 1107
MlyI GAGTC 3 cut(s) 484, 556, 799
MnlI CCTC 8 cut(s) 34, 37, 160, 333, 352, 911, 917, 1108
MroI TCCGGA 1 cut(s) 1057
MseI TTAA 8 cut(s) 294, 471, 537, 671, 723, 773, 888, 951
MspI CCGG 3 cut(s) 24, 163, 1058
MspR9I CCNGG 3 cut(s) 163, 164, 912
MvaI CCWGG 1 cut(s) 912
MvnI CGCG 1 cut(s) 676
MwoI GCNNNNNNNGC 3 cut(s) 653, 682, 1004
NciI CCSGG 2 cut(s) 163, 164
NdeII GATC 4 cut(s) 370, 519, 1054, 1072
NlaIII CATG 6 cut(s) 107, 217, 445, 456, 1070, 1151
NmuCI GTSAC 3 cut(s) 17, 605, 767
NspI RCATGY 1 cut(s) 456
PagI TCATGA 1 cut(s) 213
PciI ACATGT 1 cut(s) 452
PfeI GAWTC 2 cut(s) 79, 184
PkrI GCNGC 2 cut(s) 29, 1006
PleI GAGTC 3 cut(s) 483, 555, 799
PpsI GAGTC 3 cut(s) 483, 555, 799
PscI ACATGT 1 cut(s) 452
PshBI ATTAAT 1 cut(s) 888
Psp6I CCWGG 1 cut(s) 910
PspEI GGTNACC 1 cut(s) 605
PspFI CCCAGC 1 cut(s) 1166
PspGI CCWGG 1 cut(s) 910
PspPI GGNCC 1 cut(s) 189
PstI CTGCAG 1 cut(s) 197
PsuI RGATCY 1 cut(s) 1072
RsaI GTAC 1 cut(s) 1049
RsaNI GTAC 1 cut(s) 1048
SaqAI TTAA 8 cut(s) 294, 471, 537, 671, 723, 773, 888, 951
SatI GCNGC 2 cut(s) 28, 1005
Sau3AI GATC 4 cut(s) 370, 519, 1054, 1072
Sau96I GGNCC 1 cut(s) 189
SbfI CCTGCAGG 1 cut(s) 197
SchI GAGTC 3 cut(s) 484, 556, 799
ScrFI CCNGG 3 cut(s) 163, 164, 912
SdaI CCTGCAGG 1 cut(s) 197
SduI GDGCHC 1 cut(s) 321
SfaNI GCATC 4 cut(s) 121, 139, 166, 238
SfcI CTRYAG 1 cut(s) 193
SgrAI CRCCGGYG 1 cut(s) 23
SinI GGWCC 1 cut(s) 189
SmaI CCCGGG 1 cut(s) 164
Sse8387I CCTGCAGG 1 cut(s) 197
Sse9I AATT 7 cut(s) 95, 885, 889, 924, 1033, 1040, 1107
SsiI CCGC 6 cut(s) 10, 27, 85, 448, 973, 1173
SspI AATATT 2 cut(s) 832, 1094
SspMI CTAG 2 cut(s) 653, 1008
StyD4I CCNGG 3 cut(s) 161, 162, 910
TaaI ACNGT 2 cut(s) 399, 846
TaiI ACGT 1 cut(s) 318
TaqI TCGA 3 cut(s) 99, 402, 1044
TasI AATT 7 cut(s) 95, 885, 889, 924, 1033, 1040, 1107
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 2 cut(s) 79, 184
Tru1I TTAA 8 cut(s) 294, 471, 537, 671, 723, 773, 888, 951
Tru9I TTAA 8 cut(s) 294, 471, 537, 671, 723, 773, 888, 951
TscAI CASTG 1 cut(s) 78
TseFI GTSAC 3 cut(s) 17, 605, 767
TseI GCWGC 1 cut(s) 1004
Tsp45I GTSAC 3 cut(s) 17, 605, 767
TspDTI ATGAA 4 cut(s) 120, 202, 323, 1083
TspGWI ACGGA 2 cut(s) 53, 545
TspMI CCCGGG 1 cut(s) 162
TspRI CASTG 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 189
VspI ATTAAT 1 cut(s) 888
XapI RAATTY 4 cut(s) 95, 924, 1033, 1040
XceI RCATGY 1 cut(s) 456
XmaI CCCGGG 1 cut(s) 162
XspI CTAG 2 cut(s) 653, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.