Rh5BG140500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000544
Physical Location & Seq
Reverse (-)
14537932 .. 14538273
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG140500.1

Sequence Viewer

Length: 255 bp
ATGATTACTTCTGGAGAGCTTGTTGGCTTCAGGCATTATGAGGATGAAGCAGAGCTGGTTAGAAATGGCATTACGCACTTTAACGAGAATGTAATGAAAGACGTGCCCCCTCCTGATGATTTCTTCAACAAACGCCAAATAGGAGAGGTCGTTCTTGATCTCTTCCCAGATGTCTCCTTCAGACTGTTCGATTTTATGTGGGACAATGATGTGAATATGGACTTCACCATGTCCCGCACATGTTACAGCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.93

Weight (kDa)

4.34

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 235
AcuI CTGAAG 2 cut(s) 13, 163
AflIII ACRYGT 1 cut(s) 239
AgsI TTSAA 1 cut(s) 127
AjiI CACGTC 1 cut(s) 103
AloI GAACNNNNNNTCC 2 cut(s) 135, 167
AluBI AGCT 2 cut(s) 19, 55
AluI AGCT 2 cut(s) 19, 55
Alw26I GTCTC 1 cut(s) 178
AsuHPI GGTGA 1 cut(s) 217
BaeGI GKGCMC 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 178
BmgBI CACGTC 1 cut(s) 103
BpmI CTGGAG 1 cut(s) 33
BsaXI ACNNNNNCTCC 4 cut(s) 6, 36, 135, 165
BseGI GGATG 1 cut(s) 49
BseSI GKGCMC 1 cut(s) 108
BslFI GGGAC 2 cut(s) 215, 217
BsmAI GTCTC 1 cut(s) 178
BsmFI GGGAC 2 cut(s) 215, 217
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 1 cut(s) 235
BssMI GATC 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 186
Bst6I CTCTTC 1 cut(s) 167
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 1 cut(s) 157
BstNSI RCATGY 1 cut(s) 243
BstSLI GKGCMC 1 cut(s) 108
BtrI CACGTC 1 cut(s) 103
BtsCI GGATG 1 cut(s) 49
CviAII CATG 2 cut(s) 229, 240
CviJI RGCY 3 cut(s) 19, 27, 55
CviKI_1 RGCY 3 cut(s) 19, 27, 55
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Eco57I CTGAAG 2 cut(s) 13, 163
FaeI CATG 2 cut(s) 232, 243
FaiI YATR 5 cut(s) 39, 197, 218, 230, 241
FaqI GGGAC 2 cut(s) 215, 217
FatI CATG 2 cut(s) 228, 239
FauI CCCGC 1 cut(s) 242
FokI GGATG 1 cut(s) 56
GsuI CTGGAG 1 cut(s) 33
Hin1II CATG 2 cut(s) 232, 243
HphI GGTGA 1 cut(s) 217
Hpy188I TCNGA 1 cut(s) 182
Hpy188III TCNNGA 3 cut(s) 12, 113, 155
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4IV ACGT 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 2 cut(s) 232, 243
Kzo9I GATC 1 cut(s) 157
LpnPI CCDG 4 cut(s) 16, 41, 126, 180
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 242
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 2 cut(s) 115, 154
MhlI GDGCHC 1 cut(s) 108
MnlI CCTC 3 cut(s) 34, 120, 139
MseI TTAA 1 cut(s) 81
NdeII GATC 1 cut(s) 157
NlaIII CATG 2 cut(s) 232, 243
NspI RCATGY 1 cut(s) 243
PciI ACATGT 1 cut(s) 239
PscI ACATGT 1 cut(s) 239
SaqAI TTAA 1 cut(s) 81
Sau3AI GATC 1 cut(s) 157
SduI GDGCHC 1 cut(s) 108
SetI ASST 4 cut(s) 21, 57, 105, 150
SsiI CCGC 1 cut(s) 235
TaaI ACNGT 1 cut(s) 186
TaiI ACGT 1 cut(s) 105
TaqI TCGA 1 cut(s) 189
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TspDTI ATGAA 2 cut(s) 60, 110
XceI RCATGY 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.