Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000544

Physical Location & Seq

Genomic Coordinates Reverse (-)

14412585 .. 14413586

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG141100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGACCAAGCGTGTGGAAGAACTATTAGAAAAGATCAACAACAATACCATTAAGACTGAAAGTCCAATCCGTGTAGAAGAATACTTCACTGCTCTAAGGTGCGTTGAGCTATTATATGGTGACCACGGGCTTGATGTTATGGGTGTGTTGAGGAAAAAGGCTCCACTAGCTTTGCCTGTTATATTAACGCGCTTGAAGCAAAAGCAAGAAGAGTGGGCAAGCTTCTACTTCAAGCAACAGGACTCAAAGAGCTTAAGCACCAAAGCCTTGTTGGCGGAGATTAAAGAGATGAGTGAGAAGAAGTGGAAGGAAGATGGTGTTCTTCTTGATATTGCTGCTGGAAATAGACGACCTATTATTCCAAATTTGGAATTCGAGTACCCTGATCCGGACATCCATGAAGATCTGTATCAAGTATCAACTCATCAAATAGTTTTGTGGAGAAGTTTGCAGACCGAGCAATTGGACAAAGTTATGAAGATATGGACAACCTTCCTTGAGCCAGTGTTTGGTTTCCCTCCTCGACCTCAGGTTGCAGAGGATACTGAAGATGTTGTGAAGGCAAAAAGTCATGCTGCCAAAAATGGTGCTGTGAGCAGGGGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

202

Amino Acids

23.25

Weight (kDa)

5.91

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04860 FvH4_1g04920 FvH4_1g05010 FvH4_1g07320 FvH4_5g09280 FvH4_5g09280 FvH4_5g09280
rosa_chinensis	RchiOBHm_Chr2g0088841 RchiOBHm_Chr2g0089881 RchiOBHm_Chr2g0089901 RchiOBHm_Chr2g0089911 RchiOBHm_Chr2g0089921 RchiOBHm_Chr2g0090621 RchiOBHm_Chr2g0091091 RchiOBHm_Chr5g0019481 RchiOBHm_Chr5g0019491
rosa_laevigata	RLG00000016078 RLG00000016112 RLG00000016113 RLG00000016126 RLG00000016176 RLG00000016179 RLG00000016217 RLG00000019062 RLG00000032446 RLG00000032447 RLG00000032450
rosa_multiflora	Rmu_sc0000259.1_g000018 Rmu_sc0000779.1_g000022 Rmu_sc0002515.1_g000014 Rmu_sc0002759.1_g000046 Rmu_sc0002986.1_g000072 Rmu_sc0005230.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058560 Rroxscaffold_1G00058570 Rroxscaffold_1G00074340 Rroxscaffold_2G00150150 Rroxscaffold_2G00150970 Rroxscaffold_2G00151500 Rroxscaffold_4G00332590
rosa_rugosa	Rorug01G0127100 Rorug02G0009600 Rorug05G0051100 Rorug07G0229300
rosa_samantha	Rh2AG050300 Rh2AG050400 Rh2AG055000 Rh2AG055100 Rh2AG058600 Rh2AG058900 Rh2AG062100 Rh2BG048900 Rh2BG053100 Rh2BG053900 Rh2BG057400 Rh2BG061100 Rh2CG051100 Rh2CG055100 Rh2CG056100 Rh2CG059300 Rh2CG063200 Rh2DG049400 Rh2DG050300 Rh2DG050400 Rh2DG050500 Rh2DG055300 Rh2DG061700 Rh2DG362200 Rh4AG113200 Rh5AG141500 Rh5AG142000 Rh5AG142100 Rh5BG140400 Rh5BG140500 Rh5CG152300 Rh5CG152400 Rh5CG152500 Rh5CG152600 Rh5DG141100 Rh7DG375200
rosa_wichuraiana	Rw2G004030 Rw2G004800 Rw2G005060 Rw7G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	509
AccII	CGCG	1 cut(s)	190
AccIII	TCCGGA	1 cut(s)	388
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	1 cut(s)	380
AcsI	RAATTY	2 cut(s)	364, 371
AcuI	CTGAAG	1 cut(s)	567
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	2 cut(s)	388, 509
AflII	CTTAAG	1 cut(s)	253
AgsI	TTSAA	2 cut(s)	196, 232
AhdI	GACNNNNNGTC	1 cut(s)	60
AluBI	AGCT	4 cut(s)	109, 170, 222, 252
AluI	AGCT	4 cut(s)	109, 170, 222, 252
AlwI	GGATC	1 cut(s)	380
Aor13HI	TCCGGA	1 cut(s)	388
ApeKI	GCWGC	2 cut(s)	335, 575
ApoI	RAATTY	2 cut(s)	364, 371
AspLEI	GCGC	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	131
AxyI	CCTNAGG	1 cut(s)	528
BbvI	GCAGC	2 cut(s)	322, 562
BccI	CCATC	1 cut(s)	308
BciVI	GTATCC	1 cut(s)	535
BfaI	CTAG	1 cut(s)	167
BfrI	CTTAAG	1 cut(s)	253
BfuI	GTATCC	1 cut(s)	535
BglI	GCCNNNNNGGC	1 cut(s)	272
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	2 cut(s)	336, 576
BlsI	GCNGC	2 cut(s)	337, 577
BmeRI	GACNNNNNGTC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	518
BsaBI	GATNNNNATC	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 509
Bse1I	ACTGG	1 cut(s)	503
Bse21I	CCTNAGG	1 cut(s)	528
Bse8I	GATNNNNATC	1 cut(s)	408
BseAI	TCCGGA	1 cut(s)	388
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	1 cut(s)	393
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	2 cut(s)	388, 509
BseMII	CTCAG	1 cut(s)	542
BseNI	ACTGG	1 cut(s)	503
BseRI	GAGGAG	1 cut(s)	510
BseXI	GCAGC	2 cut(s)	322, 562
Bsh1236I	CGCG	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	388, 509
Bsp13I	TCCGGA	1 cut(s)	388
Bsp143I	GATC	3 cut(s)	33, 385, 403
BspACI	CCGC	1 cut(s)	275
BspCNI	CTCAG	1 cut(s)	541
BspEI	TCCGGA	1 cut(s)	388
BspFNI	CGCG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	162
BspPI	GGATC	1 cut(s)	380
BspTI	CTTAAG	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	503
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	3 cut(s)	33, 385, 403
Bst6I	CTCTTC	1 cut(s)	204
BstAFI	CTTAAG	1 cut(s)	253
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	95, 528
BstDSI	CCRYGG	1 cut(s)	124
BstEII	GGTNACC	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	393
BstFNI	CGCG	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	3 cut(s)	36, 388, 406
BstMBI	GATC	3 cut(s)	33, 385, 403
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 196, 272, 457
BstPI	GGTNACC	1 cut(s)	119
BstUI	CGCG	1 cut(s)	190
BstV1I	GCAGC	2 cut(s)	322, 562
BstX2I	RGATCY	1 cut(s)	403
BstXI	CCANNNNNNTGG	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	403
Bsu36I	CCTNAGG	1 cut(s)	528
BsuI	GTATCC	1 cut(s)	535
BtgI	CCRYGG	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	393
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	87, 510
Cac8I	GCNNGC	1 cut(s)	220
CfoI	GCGC	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	379
CspCI	CAANNNNNGTGG	4 cut(s)	153, 188, 194, 229
CviAII	CATG	2 cut(s)	398, 572
CviJI	RGCY	8 cut(s)	109, 130, 161, 170, 222, 252, 266, 502
CviKI_1	RGCY	8 cut(s)	109, 130, 161, 170, 222, 252, 266, 502
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	2 cut(s)	95, 528
DpnI	GATC	3 cut(s)	35, 387, 405
DpnII	GATC	3 cut(s)	33, 385, 403
DriI	GACNNNNNGTC	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	204
Eam1105I	GACNNNNNGTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	204
EciI	GGCGGA	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	567
Eco81I	CCTNAGG	1 cut(s)	528
Eco91I	GGTNACC	1 cut(s)	119
EcoO65I	GGTNACC	1 cut(s)	119
EcoRI	GAATTC	1 cut(s)	371
FaeI	CATG	2 cut(s)	401, 575
FaiI	YATR	8 cut(s)	115, 117, 140, 182, 399, 476, 484, 573
FatI	CATG	2 cut(s)	397, 571
Fnu4HI	GCNGC	2 cut(s)	336, 576
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	2 cut(s)	336, 576
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	2 cut(s)	336, 576
HapII	CCGG	1 cut(s)	389
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	401, 575
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	220
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	1 cut(s)	131
Hpy188III	TCNNGA	2 cut(s)	326, 389
HpyAV	CCTTC	3 cut(s)	301, 502, 553
HpyCH4V	TGCA	2 cut(s)	451, 536
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 196, 272, 457
HpyF3I	CTNAG	2 cut(s)	95, 528
Hsp92II	CATG	2 cut(s)	401, 575
HspAI	GCGC	1 cut(s)	190
Kpn2I	TCCGGA	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	33, 385, 403
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	8 cut(s)	189, 224, 324, 396, 402, 515, 516, 583
Lsp1109I	GCAGC	2 cut(s)	322, 562
MaeI	CTAG	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	3 cut(s)	35, 387, 405
MboI	GATC	3 cut(s)	33, 385, 403
MboII	GAAGA	9 cut(s)	29, 89, 221, 310, 314, 323, 413, 490, 560
MfeI	CAATTG	1 cut(s)	461
MflI	RGATCY	1 cut(s)	403
MluCI	AATT	3 cut(s)	364, 371, 461
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	5 cut(s)	144, 528, 531, 532, 537
MroI	TCCGGA	1 cut(s)	388
MseI	TTAA	4 cut(s)	51, 185, 254, 282
MspCI	CTTAAG	1 cut(s)	253
MspI	CCGG	1 cut(s)	389
MunI	CAATTG	1 cut(s)	461
MvnI	CGCG	1 cut(s)	190
MwoI	GCNNNNNNNGC	4 cut(s)	167, 196, 272, 457
NdeII	GATC	3 cut(s)	33, 385, 403
NlaIII	CATG	2 cut(s)	401, 575
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	119
PflMI	CCANNNNNTGG	1 cut(s)	509
PkrI	GCNGC	2 cut(s)	337, 577
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
PspEI	GGTNACC	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	403
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
SaqAI	TTAA	4 cut(s)	51, 185, 254, 282
SatI	GCNGC	2 cut(s)	336, 576
Sau3AI	GATC	3 cut(s)	33, 385, 403
SchI	GAGTC	1 cut(s)	236
SetI	ASST	9 cut(s)	101, 111, 172, 224, 254, 355, 494, 529, 534
SmlI	CTYRAG	2 cut(s)	253, 497
SmoI	CTYRAG	2 cut(s)	253, 497
Sse9I	AATT	3 cut(s)	364, 371, 461
SsiI	CCGC	1 cut(s)	275
SspMI	CTAG	1 cut(s)	167
TaqI	TCGA	2 cut(s)	375, 523
TaqII	GACCGA	1 cut(s)	470
TasI	AATT	3 cut(s)	364, 371, 461
Tru1I	TTAA	4 cut(s)	51, 185, 254, 282
Tru9I	TTAA	4 cut(s)	51, 185, 254, 282
TscAI	CASTG	2 cut(s)	94, 510
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	2 cut(s)	335, 575
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	2 cut(s)	414, 491
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	2 cut(s)	94, 510
Van91I	CCANNNNNTGG	1 cut(s)	509
Vha464I	CTTAAG	1 cut(s)	253
XapI	RAATTY	2 cut(s)	364, 371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.