Rh2DG050400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000544
Physical Location & Seq
Reverse (-)
3598360 .. 3598674
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG050400.1

Sequence Viewer

Length: 315 bp
ATGATCGAGTGGAGGGGACAGTACAATTTAGCAGTTACCAGTCAGAAGAACAAGTGGTTTAGAGATGCATACAACTTCCGAACCTACAAGGACACTGCCCTTGATGAGGCGCAGCTGGTCCGAAATATTACTCGACATTTGAATGACAACAGGAATGTTAAGAGTTTTTATTGCACTAAGCCCTACGTTGGTGCGATTGTCTTCGATACAATCCCGGATATCATTCCAAAGCTCTACTCTTTTATGTGGACCTGCAATATAGATATGGATTTTAAAAAAATATTGGTTACACCCCCGAAAGAGGACAGTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

12.38

Weight (kDa)

8.91

Isoelectric Point (pI)

31.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 260
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 3 cut(s) 106, 188, 301
AgsI TTSAA 1 cut(s) 142
AluBI AGCT 2 cut(s) 115, 232
AluI AGCT 2 cut(s) 115, 232
ApeKI GCWGC 1 cut(s) 112
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 2 cut(s) 118, 249
AsuC2I CCSGG 1 cut(s) 215
AvaII GGWCC 2 cut(s) 118, 249
BbsI GAAGAC 1 cut(s) 193
BbvI GCAGC 1 cut(s) 124
BcnI CCSGG 1 cut(s) 215
BfuAI ACCTGC 1 cut(s) 260
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
Bme1390I CCNGG 1 cut(s) 215
Bme18I GGWCC 2 cut(s) 118, 249
BmgT120I GGNCC 2 cut(s) 118, 249
BmrFI CCNGG 1 cut(s) 215
BmsI GCATC 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 193
BpuMI CCSGG 1 cut(s) 215
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 188, 301
Bse1I ACTGG 1 cut(s) 39
BseLI CCNNNNNNNGG 3 cut(s) 106, 188, 301
BseNI ACTGG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 215
BslFI GGGAC 2 cut(s) 30, 294
BslI CCNNNNNNNGG 3 cut(s) 106, 188, 301
BsmFI GGGAC 2 cut(s) 30, 294
Bsp143I GATC 1 cut(s) 3
BspMI ACCTGC 1 cut(s) 260
BsrI ACTGG 1 cut(s) 39
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 2 cut(s) 21, 308
BstDEI CTNAG 1 cut(s) 177
BstENI CCTNNNNNAGG 1 cut(s) 104
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstSCI CCNGG 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 124
BstV2I GAAGAC 1 cut(s) 193
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
BveI ACCTGC 1 cut(s) 260
CfoI GCGC 1 cut(s) 112
Cfr13I GGNCC 2 cut(s) 118, 249
Csp6I GTAC 1 cut(s) 22
CviJI RGCY 3 cut(s) 115, 181, 232
CviKI_1 RGCY 3 cut(s) 115, 181, 232
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 1 cut(s) 177
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
DraI TTTAAA 1 cut(s) 274
Eco32I GATATC 1 cut(s) 220
Eco47I GGWCC 2 cut(s) 118, 249
EcoNI CCTNNNNNAGG 1 cut(s) 104
EcoRV GATATC 1 cut(s) 220
EcoT22I ATGCAT 1 cut(s) 70
FaiI YATR 4 cut(s) 70, 245, 260, 266
FaqI GGGAC 2 cut(s) 30, 294
Fnu4HI GCNGC 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 113
GlaI GCGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 113
HapII CCGG 1 cut(s) 215
HhaI GCGC 1 cut(s) 112
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HpaII CCGG 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 3 cut(s) 45, 80, 122
Hpy8I GTNNAC 1 cut(s) 249
HpyCH4III ACNGT 2 cut(s) 21, 308
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 3 cut(s) 68, 174, 255
HpyF3I CTNAG 1 cut(s) 177
HpySE526I ACGT 1 cut(s) 186
HspAI GCGC 1 cut(s) 110
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 5 cut(s) 52, 101, 136, 228, 265
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 1 cut(s) 55
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 2 cut(s) 34, 286
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 58, 193
MluCI AATT 1 cut(s) 25
MnlI CCTC 3 cut(s) 6, 100, 295
Mph1103I ATGCAT 1 cut(s) 70
MseI TTAA 2 cut(s) 159, 273
MslI CAYNNNNRTG 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 115
MspI CCGG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 215
NciI CCSGG 1 cut(s) 215
NdeII GATC 1 cut(s) 3
NsiI ATGCAT 1 cut(s) 70
PfoI TCCNGGA 1 cut(s) 213
PkrI GCNGC 1 cut(s) 114
PspPI GGNCC 2 cut(s) 118, 249
PvuII CAGCTG 1 cut(s) 115
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 2 cut(s) 159, 273
SatI GCNGC 1 cut(s) 113
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 2 cut(s) 118, 249
ScrFI CCNGG 1 cut(s) 215
SetI ASST 5 cut(s) 86, 117, 189, 234, 254
SfaNI GCATC 1 cut(s) 55
SinI GGWCC 2 cut(s) 118, 249
SmiMI CAYNNNNRTG 1 cut(s) 141
Sse9I AATT 1 cut(s) 25
SspI AATATT 2 cut(s) 127, 282
StyD4I CCNGG 1 cut(s) 213
TaaI ACNGT 2 cut(s) 21, 308
TaiI ACGT 1 cut(s) 189
TaqI TCGA 3 cut(s) 6, 133, 204
TasI AATT 1 cut(s) 25
TatI WGTACW 1 cut(s) 21
Tru1I TTAA 2 cut(s) 159, 273
Tru9I TTAA 2 cut(s) 159, 273
TscAI CASTG 1 cut(s) 100
TseI GCWGC 1 cut(s) 112
TspRI CASTG 1 cut(s) 100
VpaK11BI GGWCC 2 cut(s) 118, 249
XagI CCTNNNNNAGG 1 cut(s) 104
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.