The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TPR_COPA_B | PF23953 | 70 - 142 | 5.1e-17 | COPA/B TPR domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 62 |
| AciI | CCGC | 1 cut(s) | 28 |
| AclWI | GGATC | 1 cut(s) | 439 |
| AcsI | RAATTY | 2 cut(s) | 107, 424 |
| AcuI | CTGAAG | 2 cut(s) | 96, 297 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 27, 62, 418 |
| AgsI | TTSAA | 2 cut(s) | 13, 375 |
| AleI | CACNNNNGTG | 1 cut(s) | 23 |
| AluBI | AGCT | 2 cut(s) | 235, 248 |
| AluI | AGCT | 2 cut(s) | 235, 248 |
| AlwI | GGATC | 1 cut(s) | 439 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 74 |
| ApeKI | GCWGC | 3 cut(s) | 52, 232, 350 |
| ApoI | RAATTY | 2 cut(s) | 107, 424 |
| AspS9I | GGNCC | 1 cut(s) | 71 |
| AvaII | GGWCC | 1 cut(s) | 71 |
| BbvI | GCAGC | 3 cut(s) | 39, 244, 337 |
| BfmI | CTRYAG | 1 cut(s) | 351 |
| BisI | GCNGC | 3 cut(s) | 53, 233, 351 |
| BlsI | GCNGC | 3 cut(s) | 54, 234, 352 |
| Bme18I | GGWCC | 1 cut(s) | 71 |
| BmgT120I | GGNCC | 1 cut(s) | 71 |
| BmrI | ACTGGG | 1 cut(s) | 126 |
| BmsI | GCATC | 1 cut(s) | 337 |
| BmuI | ACTGGG | 1 cut(s) | 126 |
| BsaAI | YACGTR | 1 cut(s) | 436 |
| BsaBI | GATNNNNATC | 1 cut(s) | 153 |
| BsaJI | CCNNGG | 1 cut(s) | 102 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 27, 62, 418 |
| Bse1I | ACTGG | 1 cut(s) | 121 |
| Bse8I | GATNNNNATC | 1 cut(s) | 153 |
| BseDI | CCNNGG | 1 cut(s) | 102 |
| BseJI | GATNNNNATC | 1 cut(s) | 153 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 27, 62, 418 |
| BseNI | ACTGG | 1 cut(s) | 121 |
| BseXI | GCAGC | 3 cut(s) | 39, 244, 337 |
| BseYI | CCCAGC | 1 cut(s) | 235 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 27, 62, 418 |
| BsmI | GAATGC | 1 cut(s) | 407 |
| Bsp143I | GATC | 2 cut(s) | 154, 444 |
| BspACI | CCGC | 1 cut(s) | 28 |
| BspMAI | CTGCAG | 1 cut(s) | 355 |
| BspPI | GGATC | 1 cut(s) | 439 |
| BsrI | ACTGG | 1 cut(s) | 121 |
| BssECI | CCNNGG | 1 cut(s) | 102 |
| BssMI | GATC | 2 cut(s) | 154, 444 |
| BssT1I | CCWWGG | 1 cut(s) | 102 |
| Bst4CI | ACNGT | 1 cut(s) | 171 |
| BstBAI | YACGTR | 1 cut(s) | 436 |
| BstDEI | CTNAG | 1 cut(s) | 413 |
| BstKTI | GATC | 2 cut(s) | 157, 447 |
| BstMBI | GATC | 2 cut(s) | 154, 444 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 208, 315, 377 |
| BstNSI | RCATGY | 1 cut(s) | 322 |
| BstSFI | CTRYAG | 1 cut(s) | 351 |
| BstSNI | TACGTA | 1 cut(s) | 436 |
| BstV1I | GCAGC | 3 cut(s) | 39, 244, 337 |
| BtsIMutI | CAGTG | 2 cut(s) | 114, 167 |
| CaiI | CAGNNNCTG | 1 cut(s) | 74 |
| Cfr13I | GGNCC | 1 cut(s) | 71 |
| CseI | GACGC | 1 cut(s) | 102 |
| CviAII | CATG | 2 cut(s) | 319, 461 |
| CviJI | RGCY | 4 cut(s) | 16, 187, 235, 248 |
| CviKI_1 | RGCY | 4 cut(s) | 16, 187, 235, 248 |
| DdeI | CTNAG | 1 cut(s) | 413 |
| DpnI | GATC | 2 cut(s) | 156, 446 |
| DpnII | GATC | 2 cut(s) | 154, 444 |
| Eco105I | TACGTA | 1 cut(s) | 436 |
| Eco130I | CCWWGG | 1 cut(s) | 102 |
| Eco47I | GGWCC | 1 cut(s) | 71 |
| Eco57I | CTGAAG | 2 cut(s) | 96, 297 |
| EcoO109I | RGGNCCY | 1 cut(s) | 71 |
| EcoT14I | CCWWGG | 1 cut(s) | 102 |
| ErhI | CCWWGG | 1 cut(s) | 102 |
| FaeI | CATG | 2 cut(s) | 322, 464 |
| FaiI | YATR | 5 cut(s) | 251, 292, 294, 320, 462 |
| FatI | CATG | 2 cut(s) | 318, 460 |
| FauI | CCCGC | 1 cut(s) | 21 |
| Fnu4HI | GCNGC | 3 cut(s) | 53, 233, 351 |
| Fsp4HI | GCNGC | 3 cut(s) | 53, 233, 351 |
| GluI | GCNGC | 3 cut(s) | 53, 233, 351 |
| GsaI | CCCAGC | 1 cut(s) | 239 |
| HgaI | GACGC | 1 cut(s) | 102 |
| Hin1II | CATG | 2 cut(s) | 322, 464 |
| HinfI | GANTC | 1 cut(s) | 218 |
| Hpy188III | TCNNGA | 1 cut(s) | 69 |
| HpyCH4III | ACNGT | 1 cut(s) | 171 |
| HpyCH4IV | ACGT | 1 cut(s) | 435 |
| HpyCH4V | TGCA | 5 cut(s) | 8, 44, 182, 353, 407 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 208, 315, 377 |
| HpyF3I | CTNAG | 1 cut(s) | 413 |
| HpySE526I | ACGT | 1 cut(s) | 435 |
| Hsp92II | CATG | 2 cut(s) | 322, 464 |
| Kzo9I | GATC | 2 cut(s) | 154, 444 |
| Lsp1109I | GCAGC | 3 cut(s) | 39, 244, 337 |
| LweI | GCATC | 1 cut(s) | 337 |
| MaeII | ACGT | 1 cut(s) | 435 |
| MaeIII | GTNAC | 2 cut(s) | 321, 431 |
| MalI | GATC | 2 cut(s) | 156, 446 |
| MboI | GATC | 2 cut(s) | 154, 444 |
| MboII | GAAGA | 4 cut(s) | 89, 158, 290, 327 |
| MfeI | CAATTG | 1 cut(s) | 375 |
| MluCI | AATT | 5 cut(s) | 85, 107, 197, 375, 424 |
| MnlI | CCTC | 4 cut(s) | 52, 265, 336, 459 |
| MslI | CAYNNNNRTG | 1 cut(s) | 23 |
| MspA1I | CMGCKG | 1 cut(s) | 235 |
| MunI | CAATTG | 1 cut(s) | 375 |
| Mva1269I | GAATGC | 1 cut(s) | 407 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 208, 315, 377 |
| NdeII | GATC | 2 cut(s) | 154, 444 |
| NlaIII | CATG | 2 cut(s) | 322, 464 |
| NspI | RCATGY | 1 cut(s) | 322 |
| OliI | CACNNNNGTG | 1 cut(s) | 23 |
| PctI | GAATGC | 1 cut(s) | 407 |
| PfeI | GAWTC | 1 cut(s) | 218 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 62 |
| PkrI | GCNGC | 3 cut(s) | 54, 234, 352 |
| Ppu21I | YACGTR | 1 cut(s) | 436 |
| PpuMI | RGGWCCY | 1 cut(s) | 71 |
| Psp5II | RGGWCCY | 1 cut(s) | 71 |
| PspFI | CCCAGC | 1 cut(s) | 235 |
| PspPI | GGNCC | 1 cut(s) | 71 |
| PspPPI | RGGWCCY | 1 cut(s) | 71 |
| PstI | CTGCAG | 1 cut(s) | 355 |
| PstNI | CAGNNNCTG | 1 cut(s) | 74 |
| PvuII | CAGCTG | 1 cut(s) | 235 |
| RseI | CAYNNNNRTG | 1 cut(s) | 23 |
| SatI | GCNGC | 3 cut(s) | 53, 233, 351 |
| Sau3AI | GATC | 2 cut(s) | 154, 444 |
| Sau96I | GGNCC | 1 cut(s) | 71 |
| SetI | ASST | 6 cut(s) | 63, 76, 237, 250, 328, 438 |
| SfaNI | GCATC | 1 cut(s) | 337 |
| SfcI | CTRYAG | 1 cut(s) | 351 |
| SinI | GGWCC | 1 cut(s) | 71 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 23 |
| SnaBI | TACGTA | 1 cut(s) | 436 |
| Sse9I | AATT | 5 cut(s) | 85, 107, 197, 375, 424 |
| SsiI | CCGC | 1 cut(s) | 28 |
| SspI | AATATT | 1 cut(s) | 403 |
| StyI | CCWWGG | 1 cut(s) | 102 |
| TaaI | ACNGT | 1 cut(s) | 171 |
| TaiI | ACGT | 1 cut(s) | 438 |
| TasI | AATT | 5 cut(s) | 85, 107, 197, 375, 424 |
| TfiI | GAWTC | 1 cut(s) | 218 |
| TscAI | CASTG | 2 cut(s) | 121, 174 |
| TseI | GCWGC | 3 cut(s) | 52, 232, 350 |
| TspGWI | ACGGA | 1 cut(s) | 105 |
| TspRI | CASTG | 2 cut(s) | 121, 174 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 62 |
| VpaK11BI | GGWCC | 1 cut(s) | 71 |
| XapI | RAATTY | 2 cut(s) | 107, 424 |
| XceI | RCATGY | 1 cut(s) | 322 |