RchiOBHm_Chr2g0091091

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000544
Physical Location & Seq
Reverse (-)
4795746 .. 4803075
7330 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46629

Sequence Viewer

Length: 537 bp
ATGAAGAACAACGAATCTGTGCCAAATCGCGTTGTGGGCCCTGGCCAGGATGACCCATGTGCTATATGCTCAAAGCCGTTTCGATTCAGGGACATCGTATCTGTGGTAGGAAAGGAGCAGCAGCACATATTTCATTTTGATTGCTACTGCTATGGTGTGGAAGTGACGCGCAGGCTTGATGACTATGCCCATGGAAGAAGGGAGACATCAGCCCGTTGCCCTCTGCAGAGAAGAAATCAACCAAATGTTATGAATACTTGCATTGCCATCGTATGCAGGGGAGTCATGGACCGTGCTCTGTATCGGTATGATCACAAGTTGCCCATTGGCGCATTGAACCCGAACAATGTGTGGGTTGTTGATAACGTTGTTCTGCTGCCAGAGGTTGAGTCAGGACCTGAAGATTATAATTATGGTGGCAGAATCAAGGAATTTGTTACTGGGACTTTTGGGGAAACAGGGGATTGGGAAGATTACTCTATTTCCTCATCACTGTTGGGTACTGCAGGGCTGAACAGAAATAAACGTGGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

20.15

Weight (kDa)

6.88

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
AccII CGCG 2 cut(s) 30, 169
AclI AACGTT 1 cut(s) 366
AcoI YGGCCR 1 cut(s) 43
AcsI RAATTY 1 cut(s) 431
AcuI CTGAAG 1 cut(s) 420
AfaI GTAC 1 cut(s) 502
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 1 cut(s) 337
AjnI CCWGG 2 cut(s) 40, 45
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 1 cut(s) 197
AlwNI CAGNNNCTG 1 cut(s) 398
AoxI GGCC 2 cut(s) 37, 43
ApaI GGGCCC 1 cut(s) 41
ApeKI GCWGC 3 cut(s) 118, 121, 376
ApoI RAATTY 1 cut(s) 431
AspLEI GCGC 2 cut(s) 171, 332
AspS9I GGNCC 4 cut(s) 37, 38, 289, 395
AvaII GGWCC 2 cut(s) 289, 395
BaeGI GKGCMC 1 cut(s) 41
BalI TGGCCA 1 cut(s) 45
BanII GRGCYC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 3 cut(s) 130, 133, 363
BccI CCATC 1 cut(s) 275
BceAI ACGGC 1 cut(s) 61
BcgI CGANNNNNNTGC 2 cut(s) 250, 284
BciT130I CCWGG 2 cut(s) 42, 47
BclI TGATCA 1 cut(s) 310
BcoDI GTCTC 1 cut(s) 197
BfmI CTRYAG 2 cut(s) 224, 504
BisI GCNGC 3 cut(s) 119, 122, 377
BlsI GCNGC 3 cut(s) 120, 123, 378
Bme1390I CCNGG 2 cut(s) 42, 47
Bme18I GGWCC 2 cut(s) 289, 395
BmgT120I GGNCC 4 cut(s) 37, 38, 289, 395
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 2 cut(s) 42, 47
BmrI ACTGGG 1 cut(s) 450
BmuI ACTGGG 1 cut(s) 450
BsaJI CCNNGG 2 cut(s) 40, 190
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse1I ACTGG 1 cut(s) 445
Bse3DI GCAATG 1 cut(s) 261
BseBI CCWGG 2 cut(s) 42, 47
BseDI CCNNGG 2 cut(s) 40, 190
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMI GCAATG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 445
BseSI GKGCMC 1 cut(s) 41
BseXI GCAGC 3 cut(s) 130, 133, 363
Bsh1236I CGCG 2 cut(s) 30, 169
BshFI GGCC 2 cut(s) 39, 45
BsiHKAI GWGCWC 1 cut(s) 298
BslFI GGGAC 2 cut(s) 104, 457
BslI CCNNNNNNNGG 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 2 cut(s) 104, 457
BsnI GGCC 2 cut(s) 39, 45
Bsp120I GGGCCC 1 cut(s) 37
Bsp1286I GDGCHC 2 cut(s) 41, 298
Bsp143I GATC 1 cut(s) 310
Bsp19I CCATGG 1 cut(s) 190
BspANI GGCC 2 cut(s) 39, 45
BspFNI CGCG 2 cut(s) 30, 169
BspLI GGNNCC 1 cut(s) 39
BspMAI CTGCAG 2 cut(s) 228, 508
BsrDI GCAATG 1 cut(s) 261
BsrI ACTGG 1 cut(s) 445
BssECI CCNNGG 2 cut(s) 40, 190
BssMI GATC 1 cut(s) 310
BssT1I CCWWGG 1 cut(s) 190
Bst2UI CCWGG 2 cut(s) 42, 47
Bst4CI ACNGT 2 cut(s) 293, 495
BstC8I GCNNGC 1 cut(s) 173
BstDSI CCRYGG 1 cut(s) 190
BstF5I GGATG 1 cut(s) 55
BstFNI CGCG 2 cut(s) 30, 169
BstHHI GCGC 2 cut(s) 171, 332
BstKTI GATC 1 cut(s) 313
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNI CCWGG 2 cut(s) 42, 47
BstSCI CCNGG 2 cut(s) 40, 45
BstSFI CTRYAG 2 cut(s) 224, 504
BstSLI GKGCMC 1 cut(s) 41
BstUI CGCG 2 cut(s) 30, 169
BstV1I GCAGC 3 cut(s) 130, 133, 363
BsuRI GGCC 2 cut(s) 39, 45
BtgI CCRYGG 1 cut(s) 190
BtsCI GGATG 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 491
Cac8I GCNNGC 1 cut(s) 173
CaiI CAGNNNCTG 1 cut(s) 398
CfoI GCGC 2 cut(s) 171, 332
Cfr13I GGNCC 4 cut(s) 37, 38, 289, 395
CseI GACGC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 501
CviAII CATG 3 cut(s) 57, 191, 286
CviJI RGCY 6 cut(s) 39, 45, 76, 175, 212, 511
CviKI_1 RGCY 6 cut(s) 39, 45, 76, 175, 212, 511
CviQI GTAC 1 cut(s) 501
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 41
Eco47I GGWCC 2 cut(s) 289, 395
Eco57I CTGAAG 1 cut(s) 420
EcoO109I RGGNCCY 2 cut(s) 38, 395
EcoRII CCWGG 2 cut(s) 40, 45
EcoT14I CCWWGG 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 3 cut(s) 60, 194, 289
FaqI GGGAC 2 cut(s) 104, 457
FatI CATG 3 cut(s) 56, 190, 285
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 3 cut(s) 119, 122, 377
FokI GGATG 1 cut(s) 62
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 3 cut(s) 119, 122, 377
GlaI GCGC 2 cut(s) 170, 331
GluI GCNGC 3 cut(s) 119, 122, 377
HaeIII GGCC 2 cut(s) 39, 45
HgaI GACGC 1 cut(s) 175
HhaI GCGC 2 cut(s) 171, 332
Hin1II CATG 3 cut(s) 60, 194, 289
Hin6I GCGC 2 cut(s) 169, 330
HinP1I GCGC 2 cut(s) 169, 330
HinfI GANTC 5 cut(s) 14, 84, 282, 389, 423
Hpy188III TCNNGA 1 cut(s) 393
HpyAV CCTTC 1 cut(s) 192
HpyCH4III ACNGT 2 cut(s) 293, 495
HpyCH4IV ACGT 2 cut(s) 366, 526
HpyCH4V TGCA 4 cut(s) 226, 261, 276, 506
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpySE526I ACGT 2 cut(s) 366, 526
Hsp92II CATG 3 cut(s) 60, 194, 289
HspAI GCGC 2 cut(s) 169, 330
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 1 cut(s) 310
LmnI GCTCC 1 cut(s) 115
Lsp1109I GCAGC 3 cut(s) 130, 133, 363
MaeII ACGT 2 cut(s) 366, 526
MaeIII GTNAC 2 cut(s) 163, 436
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 5 cut(s) 16, 207, 243, 413, 482
MhlI GDGCHC 2 cut(s) 41, 298
MlsI TGGCCA 1 cut(s) 45
MluCI AATT 2 cut(s) 409, 431
MluNI TGGCCA 1 cut(s) 45
MlyI GAGTC 2 cut(s) 291, 398
MnlI CCTC 3 cut(s) 231, 376, 496
Mox20I TGGCCA 1 cut(s) 45
MscI TGGCCA 1 cut(s) 45
MseI TTAA 1 cut(s) 535
Msp20I TGGCCA 1 cut(s) 45
MspR9I CCNGG 2 cut(s) 42, 47
MvaI CCWGG 2 cut(s) 42, 47
MvnI CGCG 2 cut(s) 30, 169
MwoI GCNNNNNNNGC 1 cut(s) 36
NcoI CCATGG 1 cut(s) 190
NdeII GATC 1 cut(s) 310
NlaIII CATG 3 cut(s) 60, 194, 289
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 163
PfeI GAWTC 3 cut(s) 14, 84, 423
PkrI GCNGC 3 cut(s) 120, 123, 378
PleI GAGTC 2 cut(s) 290, 397
PpsI GAGTC 2 cut(s) 290, 397
PpuMI RGGWCCY 1 cut(s) 395
PsiI TTATAA 1 cut(s) 408
Psp1406I AACGTT 1 cut(s) 366
Psp5II RGGWCCY 1 cut(s) 395
Psp6I CCWGG 2 cut(s) 40, 45
PspGI CCWGG 2 cut(s) 40, 45
PspN4I GGNNCC 1 cut(s) 39
PspOMI GGGCCC 1 cut(s) 37
PspPI GGNCC 4 cut(s) 37, 38, 289, 395
PspPPI RGGWCCY 1 cut(s) 395
PstI CTGCAG 2 cut(s) 228, 508
PstNI CAGNNNCTG 1 cut(s) 398
RsaI GTAC 1 cut(s) 502
RsaNI GTAC 1 cut(s) 501
SaqAI TTAA 1 cut(s) 535
SatI GCNGC 3 cut(s) 119, 122, 377
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 4 cut(s) 37, 38, 289, 395
SchI GAGTC 2 cut(s) 291, 398
ScrFI CCNGG 2 cut(s) 42, 47
SduI GDGCHC 2 cut(s) 41, 298
SetI ASST 4 cut(s) 369, 387, 400, 529
SfcI CTRYAG 2 cut(s) 224, 504
SinI GGWCC 2 cut(s) 289, 395
Sse9I AATT 2 cut(s) 409, 431
StyD4I CCNGG 2 cut(s) 40, 45
StyI CCWWGG 1 cut(s) 190
TaaI ACNGT 2 cut(s) 293, 495
TaiI ACGT 2 cut(s) 369, 529
TaqI TCGA 1 cut(s) 82
TasI AATT 2 cut(s) 409, 431
TfiI GAWTC 3 cut(s) 14, 84, 423
Tru1I TTAA 1 cut(s) 535
Tru9I TTAA 1 cut(s) 535
TscAI CASTG 1 cut(s) 498
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 3 cut(s) 118, 121, 376
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 3 cut(s) 17, 122, 266
TspRI CASTG 1 cut(s) 498
VpaK11BI GGWCC 2 cut(s) 289, 395
XapI RAATTY 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.