Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000544

Physical Location & Seq

Genomic Coordinates Forward (+)

4510602 .. 4511879

Gene Structure 1278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G004800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGACGAATGGCAAGTGGAAGCCCAGCAAAGCTACCGGTCCCGTGGCGGTGGCAAAGCGTCAGAGGTTGCCGAATCGTTCGACGGTGGATGCGTACCTCCGATACTGTGGAGGGGTCGTCAAACACCCTGCCCATTTAAGGGTTGAAGATAATGCCCTGGTTCTTCCTGCGGTTGGCTCTGGTCCTGGTCCCGAGGATAGGGATTACGCTGGCAGAACTAGAAGCTTTGTTGTTCGAGTCTTTGGGGGAACGGGGTCCTGGAAGGATTTGGATGACTTCCTGTCCAGATTAACCATCCCAGGGCTTAGAAGGGAACAGTTCACTGCTTTGTACTTCCACAGGCTGTTGCAAAACAAAGATCAGCGGGCAGTGGTGCCTGTTGAATTTGTAGATAAGATGCGCAACCGTTTAGTGACTTATAATGGAACTGTACAGCGCTGGGAAGCAGCTTACAATGATTGGGAGAAAACAGTCTATCTGGAGAAAATAGATTTAGAACAGGCTTGCAGTAAAGATCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

19.68

Weight (kDa)

9.62

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04860 FvH4_1g04920 FvH4_1g05010 FvH4_1g07320 FvH4_5g09280 FvH4_5g09280 FvH4_5g09280
rosa_chinensis	RchiOBHm_Chr2g0088841 RchiOBHm_Chr2g0089881 RchiOBHm_Chr2g0089901 RchiOBHm_Chr2g0089911 RchiOBHm_Chr2g0089921 RchiOBHm_Chr2g0090621 RchiOBHm_Chr2g0091091 RchiOBHm_Chr5g0019481 RchiOBHm_Chr5g0019491
rosa_laevigata	RLG00000016078 RLG00000016112 RLG00000016113 RLG00000016126 RLG00000016176 RLG00000016179 RLG00000016217 RLG00000019062 RLG00000032446 RLG00000032447 RLG00000032450
rosa_multiflora	Rmu_sc0000259.1_g000018 Rmu_sc0000779.1_g000022 Rmu_sc0002515.1_g000014 Rmu_sc0002759.1_g000046 Rmu_sc0002986.1_g000072 Rmu_sc0005230.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058560 Rroxscaffold_1G00058570 Rroxscaffold_1G00074340 Rroxscaffold_2G00150150 Rroxscaffold_2G00150970 Rroxscaffold_2G00151500 Rroxscaffold_4G00332590
rosa_rugosa	Rorug01G0127100 Rorug02G0009600 Rorug05G0051100 Rorug07G0229300
rosa_samantha	Rh2AG050300 Rh2AG050400 Rh2AG055000 Rh2AG055100 Rh2AG058600 Rh2AG058900 Rh2AG062100 Rh2BG048900 Rh2BG053100 Rh2BG053900 Rh2BG057400 Rh2BG061100 Rh2CG051100 Rh2CG055100 Rh2CG056100 Rh2CG059300 Rh2CG063200 Rh2DG049400 Rh2DG050300 Rh2DG050400 Rh2DG050500 Rh2DG055300 Rh2DG061700 Rh2DG362200 Rh4AG113200 Rh5AG141500 Rh5AG142000 Rh5AG142100 Rh5BG140400 Rh5BG140500 Rh5CG152300 Rh5CG152400 Rh5CG152500 Rh5CG152600 Rh5DG141100 Rh7DG375200
rosa_wichuraiana	Rw2G004030 Rw2G004800 Rw2G005060 Rw7G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	420
Acc16I	TGCGCA	1 cut(s)	401
AccB1I	GGYRCC	1 cut(s)	373
AciI	CCGC	3 cut(s)	47, 170, 364
AclWI	GGATC	1 cut(s)	509
AcsI	RAATTY	1 cut(s)	383
AfaI	GTAC	3 cut(s)	95, 332, 432
AfeI	AGCGCT	1 cut(s)	437
AfiI	CCNNNNNNNGG	5 cut(s)	138, 139, 173, 198, 300
AgeI	ACCGGT	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	146, 383
AhdI	GACNNNNNGTC	1 cut(s)	280
AjnI	CCWGG	4 cut(s)	156, 184, 257, 298
AluBI	AGCT	3 cut(s)	32, 225, 449
AluI	AGCT	3 cut(s)	32, 225, 449
AlwI	GGATC	1 cut(s)	509
Ama87I	CYCGRG	1 cut(s)	191
Aor51HI	AGCGCT	1 cut(s)	437
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	1 cut(s)	383
AsiGI	ACCGGT	1 cut(s)	35
AspLEI	GCGC	2 cut(s)	402, 438
AspS9I	GGNCC	4 cut(s)	38, 182, 188, 255
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	4 cut(s)	38, 182, 188, 255
BanI	GGYRCC	1 cut(s)	373
BbvI	GCAGC	1 cut(s)	458
BccI	CCATC	1 cut(s)	302
BciT130I	CCWGG	4 cut(s)	158, 186, 259, 300
BfaI	CTAG	2 cut(s)	219, 520
BfoI	RGCGCY	1 cut(s)	439
BisI	GCNGC	1 cut(s)	447
BlsI	GCNGC	1 cut(s)	448
Bme1390I	CCNGG	4 cut(s)	158, 186, 259, 300
Bme18I	GGWCC	4 cut(s)	38, 182, 188, 255
BmeRI	GACNNNNNGTC	1 cut(s)	280
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	4 cut(s)	38, 182, 188, 255
BmiI	GGNNCC	4 cut(s)	40, 190, 256, 375
BmrFI	CCNGG	4 cut(s)	158, 186, 259, 300
BmsI	GCATC	2 cut(s)	79, 387
BpmI	CTGGAG	1 cut(s)	500
BsaJI	CCNNGG	5 cut(s)	42, 156, 192, 298, 299
BsaWI	WCCGGW	1 cut(s)	35
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	5 cut(s)	138, 139, 173, 198, 300
Bse118I	RCCGGY	1 cut(s)	35
BseBI	CCWGG	4 cut(s)	158, 186, 259, 300
BseDI	CCNNGG	5 cut(s)	42, 156, 192, 298, 299
BseGI	GGATG	3 cut(s)	94, 277, 294
BseLI	CCNNNNNNNGG	5 cut(s)	138, 139, 173, 198, 300
BseXI	GCAGC	1 cut(s)	458
BseYI	CCCAGC	2 cut(s)	23, 438
BshNI	GGYRCC	1 cut(s)	373
BshTI	ACCGGT	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	2 cut(s)	24, 174
BslI	CCNNNNNNNGG	5 cut(s)	138, 139, 173, 198, 300
BsmFI	GGGAC	2 cut(s)	24, 174
BsoBI	CYCGRG	1 cut(s)	191
Bsp1407I	TGTACA	1 cut(s)	430
Bsp143I	GATC	2 cut(s)	358, 514
BspACI	CCGC	3 cut(s)	47, 170, 364
BspLI	GGNNCC	4 cut(s)	40, 190, 256, 375
BspPI	GGATC	1 cut(s)	509
BspT107I	GGYRCC	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	35
BsrGI	TGTACA	1 cut(s)	430
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	5 cut(s)	42, 156, 192, 298, 299
BssMI	GATC	2 cut(s)	358, 514
Bst2UI	CCWGG	4 cut(s)	158, 186, 259, 300
Bst4CI	ACNGT	6 cut(s)	85, 107, 318, 407, 430, 472
BstAUI	TGTACA	1 cut(s)	430
BstC8I	GCNNGC	3 cut(s)	211, 366, 505
BstDEI	CTNAG	1 cut(s)	305
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	3 cut(s)	94, 277, 294
BstH2I	RGCGCY	1 cut(s)	439
BstHHI	GCGC	2 cut(s)	402, 438
BstKTI	GATC	2 cut(s)	361, 517
BstMBI	GATC	2 cut(s)	358, 514
BstNI	CCWGG	4 cut(s)	158, 186, 259, 300
BstSCI	CCNGG	4 cut(s)	156, 184, 257, 298
BstV1I	GCAGC	1 cut(s)	458
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	3 cut(s)	94, 277, 294
BtsI	GCAGTG	2 cut(s)	321, 375
BtsIMutI	CAGTG	2 cut(s)	321, 375
Cac8I	GCNNGC	3 cut(s)	211, 366, 505
CfoI	GCGC	2 cut(s)	402, 438
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	4 cut(s)	38, 182, 188, 255
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	3 cut(s)	94, 331, 431
CspAI	ACCGGT	1 cut(s)	35
CviJI	RGCY	8 cut(s)	22, 32, 177, 225, 304, 343, 449, 503
CviKI_1	RGCY	8 cut(s)	22, 32, 177, 225, 304, 343, 449, 503
CviQI	GTAC	3 cut(s)	94, 331, 431
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	2 cut(s)	360, 516
DpnII	GATC	2 cut(s)	358, 514
DriI	GACNNNNNGTC	1 cut(s)	280
Eam1105I	GACNNNNNGTC	1 cut(s)	280
Eco47I	GGWCC	4 cut(s)	38, 182, 188, 255
Eco47III	AGCGCT	1 cut(s)	437
Eco88I	CYCGRG	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	255
EcoRII	CCWGG	4 cut(s)	156, 184, 257, 298
FaiI	YATR	1 cut(s)	420
FaqI	GGGAC	2 cut(s)	24, 174
FauI	CCCGC	1 cut(s)	357
Fnu4HI	GCNGC	1 cut(s)	447
FokI	GGATG	3 cut(s)	101, 281, 284
Fsp4HI	GCNGC	1 cut(s)	447
FspBI	CTAG	2 cut(s)	219, 520
FspI	TGCGCA	1 cut(s)	401
GlaI	GCGC	2 cut(s)	401, 437
GluI	GCNGC	1 cut(s)	447
GsaI	CCCAGC	2 cut(s)	27, 442
GsuI	CTGGAG	1 cut(s)	500
HaeII	RGCGCY	1 cut(s)	439
HapII	CCGG	1 cut(s)	36
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	2 cut(s)	402, 438
Hin6I	GCGC	2 cut(s)	400, 436
HinP1I	GCGC	2 cut(s)	400, 436
HindIII	AAGCTT	1 cut(s)	223
HinfI	GANTC	2 cut(s)	73, 237
HpaII	CCGG	1 cut(s)	36
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	2 cut(s)	63, 101
Hpy188III	TCNNGA	3 cut(s)	191, 285, 479
Hpy8I	GTNNAC	1 cut(s)	321
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	256, 303
HpyCH4III	ACNGT	6 cut(s)	85, 107, 318, 407, 430, 472
HpyCH4V	TGCA	2 cut(s)	349, 507
HpyF3I	CTNAG	1 cut(s)	305
HspAI	GCGC	2 cut(s)	400, 436
Kzo9I	GATC	2 cut(s)	358, 514
Lsp1109I	GCAGC	1 cut(s)	458
LweI	GCATC	2 cut(s)	79, 387
MaeI	CTAG	2 cut(s)	219, 520
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	2 cut(s)	360, 516
MboI	GATC	2 cut(s)	358, 514
MboII	GAAGA	2 cut(s)	155, 158
MflI	RGATCY	1 cut(s)	514
MluCI	AATT	1 cut(s)	383
MlyI	GAGTC	1 cut(s)	246
MnlI	CCTC	4 cut(s)	57, 104, 107, 187
MseI	TTAA	2 cut(s)	137, 290
MspA1I	CMGCKG	1 cut(s)	364
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	4 cut(s)	158, 186, 259, 300
MvaI	CCWGG	4 cut(s)	158, 186, 259, 300
NdeII	GATC	2 cut(s)	358, 514
NlaIV	GGNNCC	4 cut(s)	40, 190, 256, 375
NmuCI	GTSAC	1 cut(s)	412
NsbI	TGCGCA	1 cut(s)	401
PasI	CCCWGGG	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	73
PfoI	TCCNGGA	1 cut(s)	257
PinAI	ACCGGT	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	448
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PpuMI	RGGWCCY	1 cut(s)	255
PsiI	TTATAA	1 cut(s)	420
Psp5II	RGGWCCY	1 cut(s)	255
Psp6I	CCWGG	4 cut(s)	156, 184, 257, 298
PspFI	CCCAGC	2 cut(s)	23, 438
PspGI	CCWGG	4 cut(s)	156, 184, 257, 298
PspN4I	GGNNCC	4 cut(s)	40, 190, 256, 375
PspPI	GGNCC	4 cut(s)	38, 182, 188, 255
PspPPI	RGGWCCY	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	514
RsaI	GTAC	3 cut(s)	95, 332, 432
RsaNI	GTAC	3 cut(s)	94, 331, 431
SaqAI	TTAA	2 cut(s)	137, 290
SatI	GCNGC	1 cut(s)	447
Sau3AI	GATC	2 cut(s)	358, 514
Sau96I	GGNCC	4 cut(s)	38, 182, 188, 255
SchI	GAGTC	1 cut(s)	246
ScrFI	CCNGG	4 cut(s)	158, 186, 259, 300
SetI	ASST	5 cut(s)	34, 68, 99, 227, 451
SfaNI	GCATC	2 cut(s)	79, 387
SinI	GGWCC	4 cut(s)	38, 182, 188, 255
Sse9I	AATT	1 cut(s)	383
SsiI	CCGC	3 cut(s)	47, 170, 364
SspMI	CTAG	2 cut(s)	219, 520
StyD4I	CCNGG	4 cut(s)	156, 184, 257, 298
TaaI	ACNGT	6 cut(s)	85, 107, 318, 407, 430, 472
TaqI	TCGA	2 cut(s)	80, 235
TasI	AATT	1 cut(s)	383
TatI	WGTACW	2 cut(s)	330, 430
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	2 cut(s)	137, 290
Tru9I	TTAA	2 cut(s)	137, 290
TscAI	CASTG	2 cut(s)	328, 375
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	1 cut(s)	446
Tsp45I	GTSAC	1 cut(s)	412
TspRI	CASTG	2 cut(s)	328, 375
VpaK11BI	GGWCC	4 cut(s)	38, 182, 188, 255
XapI	RAATTY	1 cut(s)	383
XspI	CTAG	2 cut(s)	219, 520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.