Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000544

Physical Location & Seq

Genomic Coordinates Reverse (-)

4281206 .. 4282366

Gene Structure 1161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG057400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGAGAACAACGAATCTGTGCCGAATCGCGTTGTGGGCCCTGGCCAGGATGACACATGTGCTATATGCTCAAAGCTGTTTCGATTCAGGGACATCGTATCTGTGGTAGGGAAGGCGAAGCCGCACATATTTCATTTTGATTGCTACGGCTATGGTGTGGAAGTGACGCAATTGCTTGATGACGAAGACCATGGAAGAAAGGGGACATCAGCCCGTTGCCCTCTCTGCAGAGAAGAAATCAAGTATGGAGACTATCTTACTTATTTACATCTCGAGGAGGGTTTAACACGGCTCCGCGTCGACCAGTATCCACCTCCACCACCACCACCGCGGCGTCTCCCACCAGTTCCTGCCGGAGATCAGCCTCCACCACCTCCACCTCCACCTCCACCTCCTCCCCCGCCGCCGCCTGATGGAGACCAGGGTGCTGACATGTTTGAAGATGCCTTTACGGGGCCAGCCCGGGGCGACAACCCAACCACCTCTTCCCACACGTTGGACGTAAGCGGGGGATTTGAATCTCCTATGAGCCCTACTTGGCTGCCATCAACAACTCAGTTTAAGAGATTTGGAAAACTGATTAAGAGAAGAAGCCACTACGTCAACTGGTTTCTTTTCGGGCTTGGGTCACAGATCAAAGCCACTGTGCTCTTCAATGCTGTCATCTACTTCTCCCCTTACTCAGTCCCAGTTCCATCCACGGGAGACTTCCAGCCGGAAATTAAAGATAATGCTGCGATTGAGATAATCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009664 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048046 GO:0055044 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

251

Amino Acids

27.77

Weight (kDa)

5.51

Isoelectric Point (pI)

58.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04860 FvH4_1g04920 FvH4_1g05010 FvH4_1g07320 FvH4_5g09280 FvH4_5g09280 FvH4_5g09280
rosa_chinensis	RchiOBHm_Chr2g0088841 RchiOBHm_Chr2g0089881 RchiOBHm_Chr2g0089901 RchiOBHm_Chr2g0089911 RchiOBHm_Chr2g0089921 RchiOBHm_Chr2g0090621 RchiOBHm_Chr2g0091091 RchiOBHm_Chr5g0019481 RchiOBHm_Chr5g0019491
rosa_laevigata	RLG00000016078 RLG00000016112 RLG00000016113 RLG00000016126 RLG00000016176 RLG00000016179 RLG00000016217 RLG00000019062 RLG00000032446 RLG00000032447 RLG00000032450
rosa_multiflora	Rmu_sc0000259.1_g000018 Rmu_sc0000779.1_g000022 Rmu_sc0002515.1_g000014 Rmu_sc0002759.1_g000046 Rmu_sc0002986.1_g000072 Rmu_sc0005230.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058560 Rroxscaffold_1G00058570 Rroxscaffold_1G00074340 Rroxscaffold_2G00150150 Rroxscaffold_2G00150970 Rroxscaffold_2G00151500 Rroxscaffold_4G00332590
rosa_rugosa	Rorug01G0127100 Rorug02G0009600 Rorug05G0051100 Rorug07G0229300
rosa_samantha	Rh2AG050300 Rh2AG050400 Rh2AG055000 Rh2AG055100 Rh2AG058600 Rh2AG058900 Rh2AG062100 Rh2BG048900 Rh2BG053100 Rh2BG053900 Rh2BG057400 Rh2BG061100 Rh2CG051100 Rh2CG055100 Rh2CG056100 Rh2CG059300 Rh2CG063200 Rh2DG049400 Rh2DG050300 Rh2DG050400 Rh2DG050500 Rh2DG055300 Rh2DG061700 Rh2DG362200 Rh4AG113200 Rh5AG141500 Rh5AG142000 Rh5AG142100 Rh5BG140400 Rh5BG140500 Rh5CG152300 Rh5CG152400 Rh5CG152500 Rh5CG152600 Rh5DG141100 Rh7DG375200
rosa_wichuraiana	Rw2G004030 Rw2G004800 Rw2G005060 Rw7G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	496
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	3 cut(s)	30, 297, 331
AciI	CCGC	8 cut(s)	122, 295, 329, 331, 401, 404, 407, 507
AcoI	YGGCCR	1 cut(s)	43
AcyI	GRCGYC	1 cut(s)	334
AfiI	CCNNNNNNNGG	6 cut(s)	46, 413, 453, 464, 496, 701
AflIII	ACRYGT	3 cut(s)	56, 432, 492
AgsI	TTSAA	3 cut(s)	440, 518, 655
AjnI	CCWGG	3 cut(s)	40, 45, 420
AjuI	GAANNNNNNNTTGG	2 cut(s)	469, 501
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Alw21I	GWGCWC	1 cut(s)	651
Alw26I	GTCTC	4 cut(s)	243, 341, 411, 699
AlwNI	CAGNNNCTG	1 cut(s)	350
Ama87I	CYCGRG	2 cut(s)	272, 462
AoxI	GGCC	3 cut(s)	37, 43, 455
ApaI	GGGCCC	1 cut(s)	41
ApeKI	GCWGC	2 cut(s)	541, 734
AspS9I	GGNCC	3 cut(s)	37, 38, 455
AsuC2I	CCSGG	2 cut(s)	463, 464
AvaI	CYCGRG	2 cut(s)	272, 462
BaeGI	GKGCMC	1 cut(s)	41
BalI	TGGCCA	1 cut(s)	45
BanII	GRGCYC	2 cut(s)	41, 533
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	651
BbvI	GCAGC	2 cut(s)	528, 721
BccI	CCATC	3 cut(s)	407, 553, 703
BceAI	ACGGC	2 cut(s)	163, 305
BciT130I	CCWGG	3 cut(s)	42, 47, 422
BciVI	GTATCC	1 cut(s)	318
BcnI	CCSGG	2 cut(s)	463, 464
BcoDI	GTCTC	4 cut(s)	243, 341, 411, 699
BfmI	CTRYAG	1 cut(s)	226
BfuI	GTATCC	1 cut(s)	318
BisI	GCNGC	6 cut(s)	122, 332, 404, 407, 542, 735
BlsI	GCNGC	6 cut(s)	123, 333, 405, 408, 543, 736
Bme1390I	CCNGG	5 cut(s)	42, 47, 422, 463, 464
BmeT110I	CYCGRG	2 cut(s)	272, 462
BmgT120I	GGNCC	3 cut(s)	37, 38, 455
BmiI	GGNNCC	3 cut(s)	39, 293, 456
BmrFI	CCNGG	5 cut(s)	42, 47, 422, 463, 464
BmrI	ACTGGG	1 cut(s)	683
BmsI	GCATC	1 cut(s)	433
BmuI	ACTGGG	1 cut(s)	683
BpiI	GAAGAC	1 cut(s)	192
BpuMI	CCSGG	2 cut(s)	463, 464
BsaBI	GATNNNNATC	1 cut(s)	517
BsaHI	GRCGYC	1 cut(s)	334
BsaI	GGTCTC	1 cut(s)	411
BsaJI	CCNNGG	7 cut(s)	40, 190, 329, 421, 462, 463, 699
Bsc4I	CCNNNNNNNGG	6 cut(s)	46, 413, 453, 464, 496, 701
Bse1I	ACTGG	4 cut(s)	304, 344, 611, 689
Bse8I	GATNNNNATC	1 cut(s)	517
BseBI	CCWGG	3 cut(s)	42, 47, 422
BseDI	CCNNGG	7 cut(s)	40, 190, 329, 421, 462, 463, 699
BseGI	GGATG	2 cut(s)	55, 695
BseJI	GATNNNNATC	1 cut(s)	517
BseLI	CCNNNNNNNGG	6 cut(s)	46, 413, 453, 464, 496, 701
BseMII	CTCAG	2 cut(s)	569, 696
BseNI	ACTGG	4 cut(s)	304, 344, 611, 689
BseRI	GAGGAG	2 cut(s)	290, 384
BseSI	GKGCMC	1 cut(s)	41
BseXI	GCAGC	2 cut(s)	528, 721
Bsh1236I	CGCG	3 cut(s)	30, 297, 331
BshFI	GGCC	3 cut(s)	39, 45, 457
BsiHKAI	GWGCWC	1 cut(s)	651
BsiHKCI	CYCGRG	2 cut(s)	272, 462
BsiSI	CCGG	3 cut(s)	354, 463, 716
BslFI	GGGAC	3 cut(s)	104, 217, 671
BslI	CCNNNNNNNGG	6 cut(s)	46, 413, 453, 464, 496, 701
BsmAI	GTCTC	4 cut(s)	243, 341, 411, 699
BsmBI	CGTCTC	1 cut(s)	341
BsmFI	GGGAC	3 cut(s)	104, 217, 671
BsnI	GGCC	3 cut(s)	39, 45, 457
Bso31I	GGTCTC	1 cut(s)	411
BsoBI	CYCGRG	2 cut(s)	272, 462
Bsp120I	GGGCCC	1 cut(s)	37
Bsp1286I	GDGCHC	3 cut(s)	41, 533, 651
Bsp143I	GATC	2 cut(s)	358, 633
Bsp19I	CCATGG	1 cut(s)	190
BspACI	CCGC	8 cut(s)	122, 295, 329, 331, 401, 404, 407, 507
BspANI	GGCC	3 cut(s)	39, 45, 457
BspCNI	CTCAG	2 cut(s)	568, 695
BspFNI	CGCG	3 cut(s)	30, 297, 331
BspLI	GGNNCC	3 cut(s)	39, 293, 456
BspMAI	CTGCAG	1 cut(s)	230
BspQI	GCTCTTC	1 cut(s)	656
BspTNI	GGTCTC	1 cut(s)	411
BsrI	ACTGG	4 cut(s)	304, 344, 611, 689
BssECI	CCNNGG	7 cut(s)	40, 190, 329, 421, 462, 463, 699
BssMI	GATC	2 cut(s)	358, 633
BssNI	GRCGYC	1 cut(s)	334
BssT1I	CCWWGG	1 cut(s)	190
Bst2UI	CCWGG	3 cut(s)	42, 47, 422
Bst4CI	ACNGT	1 cut(s)	646
Bst6I	CTCTTC	2 cut(s)	490, 656
BstACI	GRCGYC	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	2 cut(s)	555, 682
BstDSI	CCRYGG	3 cut(s)	190, 329, 699
BstF5I	GGATG	2 cut(s)	55, 695
BstFNI	CGCG	3 cut(s)	30, 297, 331
BstKTI	GATC	2 cut(s)	361, 636
BstMAI	GTCTC	4 cut(s)	243, 341, 411, 699
BstMBI	GATC	2 cut(s)	358, 633
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 225
BstNI	CCWGG	3 cut(s)	42, 47, 422
BstNSI	RCATGY	2 cut(s)	60, 436
BstSCI	CCNGG	5 cut(s)	40, 45, 420, 461, 462
BstSFI	CTRYAG	1 cut(s)	226
BstSLI	GKGCMC	1 cut(s)	41
BstUI	CGCG	3 cut(s)	30, 297, 331
BstV1I	GCAGC	2 cut(s)	528, 721
BstV2I	GAAGAC	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	318
BsuRI	GGCC	3 cut(s)	39, 45, 457
BtgI	CCRYGG	3 cut(s)	190, 329, 699
BtsCI	GGATG	2 cut(s)	55, 695
BtsIMutI	CAGTG	1 cut(s)	642
Cac8I	GCNNGC	1 cut(s)	459
CaiI	CAGNNNCTG	1 cut(s)	350
Cfr13I	GGNCC	3 cut(s)	37, 38, 455
Cfr42I	CCGCGG	1 cut(s)	332
Cfr9I	CCCGGG	1 cut(s)	462
CseI	GACGC	3 cut(s)	175, 286, 323
CviAII	CATG	3 cut(s)	57, 191, 433
DdeI	CTNAG	2 cut(s)	555, 682
DpnI	GATC	2 cut(s)	360, 635
DpnII	GATC	2 cut(s)	358, 633
EaeI	YGGCCR	1 cut(s)	43
Eam1104I	CTCTTC	2 cut(s)	490, 656
EarI	CTCTTC	2 cut(s)	490, 656
Eco130I	CCWWGG	1 cut(s)	190
Eco24I	GRGCYC	2 cut(s)	41, 533
Eco31I	GGTCTC	1 cut(s)	411
Eco88I	CYCGRG	2 cut(s)	272, 462
EcoO109I	RGGNCCY	1 cut(s)	38
EcoRII	CCWGG	3 cut(s)	40, 45, 420
EcoT14I	CCWWGG	1 cut(s)	190
EcoT38I	GRGCYC	2 cut(s)	41, 533
ErhI	CCWWGG	1 cut(s)	190
Esp3I	CGTCTC	1 cut(s)	341
FaeI	CATG	3 cut(s)	60, 194, 436
FaiI	YATR	9 cut(s)	58, 65, 67, 128, 153, 192, 246, 434, 527
FaqI	GGGAC	3 cut(s)	104, 217, 671
FatI	CATG	3 cut(s)	56, 190, 432
FauI	CCCGC	2 cut(s)	408, 500
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	6 cut(s)	122, 332, 404, 407, 542, 735
FokI	GGATG	2 cut(s)	62, 682
FriOI	GRGCYC	2 cut(s)	41, 533
Fsp4HI	GCNGC	6 cut(s)	122, 332, 404, 407, 542, 735
GluI	GCNGC	6 cut(s)	122, 332, 404, 407, 542, 735
HaeIII	GGCC	3 cut(s)	39, 45, 457
HapII	CCGG	3 cut(s)	354, 463, 716
HgaI	GACGC	3 cut(s)	175, 286, 323
Hin1I	GRCGYC	1 cut(s)	334
Hin1II	CATG	3 cut(s)	60, 194, 436
HincII	GTYRAC	2 cut(s)	301, 604
HindII	GTYRAC	2 cut(s)	301, 604
HinfI	GANTC	4 cut(s)	14, 25, 84, 518
HpaII	CCGG	3 cut(s)	354, 463, 716
Hpy166II	GTNNAC	2 cut(s)	301, 604
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	2 cut(s)	301, 604
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	646
HpyCH4IV	ACGT	3 cut(s)	494, 501, 600
HpyCH4V	TGCA	1 cut(s)	228
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 225
HpyF3I	CTNAG	2 cut(s)	555, 682
HpySE526I	ACGT	3 cut(s)	494, 501, 600
Hsp92I	GRCGYC	1 cut(s)	334
Hsp92II	CATG	3 cut(s)	60, 194, 436
KspI	CCGCGG	1 cut(s)	332
Kzo9I	GATC	2 cut(s)	358, 633
LguI	GCTCTTC	1 cut(s)	656
LmnI	GCTCC	1 cut(s)	297
Lsp1109I	GCAGC	2 cut(s)	528, 721
LweI	GCATC	1 cut(s)	433
MaeII	ACGT	3 cut(s)	494, 501, 600
MaeIII	GTNAC	2 cut(s)	163, 627
MalI	GATC	2 cut(s)	360, 635
MboI	GATC	2 cut(s)	358, 633
MboII	GAAGA	7 cut(s)	197, 207, 245, 452, 477, 600, 643
MfeI	CAATTG	1 cut(s)	170
MhlI	GDGCHC	3 cut(s)	41, 533, 651
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	2 cut(s)	170, 720
MluNI	TGGCCA	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	477
Mox20I	TGGCCA	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	45
MseI	TTAA	4 cut(s)	284, 561, 582, 723
Msp20I	TGGCCA	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	331
MspI	CCGG	3 cut(s)	354, 463, 716
MspR9I	CCNGG	5 cut(s)	42, 47, 422, 463, 464
MunI	CAATTG	1 cut(s)	170
MvaI	CCWGG	3 cut(s)	42, 47, 422
MvnI	CGCG	3 cut(s)	30, 297, 331
MwoI	GCNNNNNNNGC	2 cut(s)	36, 225
NciI	CCSGG	2 cut(s)	463, 464
NcoI	CCATGG	1 cut(s)	190
NdeII	GATC	2 cut(s)	358, 633
NlaIII	CATG	3 cut(s)	60, 194, 436
NlaIV	GGNNCC	3 cut(s)	39, 293, 456
NmuCI	GTSAC	2 cut(s)	163, 627
NspI	RCATGY	2 cut(s)	60, 436
PaeR7I	CTCGAG	1 cut(s)	272
PciI	ACATGT	2 cut(s)	56, 432
PciSI	GCTCTTC	1 cut(s)	656
PfeI	GAWTC	4 cut(s)	14, 25, 84, 518
PflMI	CCANNNNNTGG	1 cut(s)	496
PkrI	GCNGC	6 cut(s)	123, 333, 405, 408, 543, 736
PscI	ACATGT	2 cut(s)	56, 432
Psp6I	CCWGG	3 cut(s)	40, 45, 420
PspGI	CCWGG	3 cut(s)	40, 45, 420
PspN4I	GGNNCC	3 cut(s)	39, 293, 456
PspOMI	GGGCCC	1 cut(s)	37
PspPI	GGNCC	3 cut(s)	37, 38, 455
PstI	CTGCAG	1 cut(s)	230
PstNI	CAGNNNCTG	1 cut(s)	350
SacII	CCGCGG	1 cut(s)	332
SalI	GTCGAC	1 cut(s)	299
SapI	GCTCTTC	1 cut(s)	656
SaqAI	TTAA	4 cut(s)	284, 561, 582, 723
SatI	GCNGC	6 cut(s)	122, 332, 404, 407, 542, 735
Sau3AI	GATC	2 cut(s)	358, 633
Sau96I	GGNCC	3 cut(s)	37, 38, 455
ScrFI	CCNGG	5 cut(s)	42, 47, 422, 463, 464
SduI	GDGCHC	3 cut(s)	41, 533, 651
SfaNI	GCATC	1 cut(s)	433
SfcI	CTRYAG	1 cut(s)	226
Sfr274I	CTCGAG	1 cut(s)	272
Sfr303I	CCGCGG	1 cut(s)	332
SgrBI	CCGCGG	1 cut(s)	332
SlaI	CTCGAG	1 cut(s)	272
SmaI	CCCGGG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	2 cut(s)	170, 720
SsiI	CCGC	8 cut(s)	122, 295, 329, 331, 401, 404, 407, 507
StyD4I	CCNGG	5 cut(s)	40, 45, 420, 461, 462
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	646
TaiI	ACGT	3 cut(s)	497, 504, 603
TaqI	TCGA	3 cut(s)	82, 273, 300
TasI	AATT	2 cut(s)	170, 720
TauI	GCSGC	4 cut(s)	124, 334, 406, 409
TfiI	GAWTC	4 cut(s)	14, 25, 84, 518
Tru1I	TTAA	4 cut(s)	284, 561, 582, 723
Tru9I	TTAA	4 cut(s)	284, 561, 582, 723
TscAI	CASTG	1 cut(s)	649
TseFI	GTSAC	2 cut(s)	163, 627
TseI	GCWGC	2 cut(s)	541, 734
Tsp45I	GTSAC	2 cut(s)	163, 627
TspDTI	ATGAA	1 cut(s)	122
TspMI	CCCGGG	1 cut(s)	462
TspRI	CASTG	1 cut(s)	649
Van91I	CCANNNNNTGG	1 cut(s)	496
XceI	RCATGY	2 cut(s)	60, 436
XhoI	CTCGAG	1 cut(s)	272
XmaI	CCCGGG	1 cut(s)	462
XmiI	GTMKAC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.