Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000544

Physical Location & Seq

Genomic Coordinates Forward (+)

80477731 .. 80478392

Gene Structure 662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00058570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGACTGAGAAGAAGCGGAAGGAAGATGATGTTCTTCTTGCTATTGCTGCTAGAAATAGACGACCTATTATTCCAAATTTGGAATTCGAGTACCCTGATCCGGACATCCATGAAGATCTTTTGCAGACCGAGCAATTGGACAAAGTTATGAAGATATGGACAACCTTCCTTGAGCCAGTGCTTGGTTTCCCTCCTCGGCCTCAGATTGCAGAGGATACTGAAGATGTTGTGAAGGCAAAAACTCATGCTGGCAAAAAAGGTGCTTTAAATTCATCGAGAACTGGAGACGAAAGCATTCAACCTGAACAATCAGACTCTGCAAGAGCTTGTACGGTAAATGGAGCTAATGGGCTCAAAGAAGAAAGTCATTTCATATCAAGAACTGGATGGAGGTGCTCCTTTGCTTCTTTGTGCGTACAAGGAGGAATCAGTCCAAGGGTGGGCACAAATCTAACATGGATGGGGCAGGGTTTGGTGAATTTCACCTCTGGCAAATCCAAAAGAGGACCAACTGTCATTTCATATCAAGGACTGAGATTTTATGGTGCTCCGTTAAGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

187

Amino Acids

20.66

Weight (kDa)

7.67

Isoelectric Point (pI)

47.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04860 FvH4_1g04920 FvH4_1g05010 FvH4_1g07320 FvH4_5g09280 FvH4_5g09280 FvH4_5g09280
rosa_chinensis	RchiOBHm_Chr2g0088841 RchiOBHm_Chr2g0089881 RchiOBHm_Chr2g0089901 RchiOBHm_Chr2g0089911 RchiOBHm_Chr2g0089921 RchiOBHm_Chr2g0090621 RchiOBHm_Chr2g0091091 RchiOBHm_Chr5g0019481 RchiOBHm_Chr5g0019491
rosa_laevigata	RLG00000016078 RLG00000016112 RLG00000016113 RLG00000016126 RLG00000016176 RLG00000016179 RLG00000016217 RLG00000019062 RLG00000032446 RLG00000032447 RLG00000032450
rosa_multiflora	Rmu_sc0000259.1_g000018 Rmu_sc0000779.1_g000022 Rmu_sc0002515.1_g000014 Rmu_sc0002759.1_g000046 Rmu_sc0002986.1_g000072 Rmu_sc0005230.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058560 Rroxscaffold_1G00058570 Rroxscaffold_1G00074340 Rroxscaffold_2G00150150 Rroxscaffold_2G00150970 Rroxscaffold_2G00151500 Rroxscaffold_4G00332590
rosa_rugosa	Rorug01G0127100 Rorug02G0009600 Rorug05G0051100 Rorug07G0229300
rosa_samantha	Rh2AG050300 Rh2AG050400 Rh2AG055000 Rh2AG055100 Rh2AG058600 Rh2AG058900 Rh2AG062100 Rh2BG048900 Rh2BG053100 Rh2BG053900 Rh2BG057400 Rh2BG061100 Rh2CG051100 Rh2CG055100 Rh2CG056100 Rh2CG059300 Rh2CG063200 Rh2DG049400 Rh2DG050300 Rh2DG050400 Rh2DG050500 Rh2DG055300 Rh2DG061700 Rh2DG362200 Rh4AG113200 Rh5AG141500 Rh5AG142000 Rh5AG142100 Rh5BG140400 Rh5BG140500 Rh5CG152300 Rh5CG152400 Rh5CG152500 Rh5CG152600 Rh5DG141100 Rh7DG375200
rosa_wichuraiana	Rw2G004030 Rw2G004800 Rw2G005060 Rw7G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	182
AccIII	TCCGGA	1 cut(s)	100
AciI	CCGC	1 cut(s)	16
AclWI	GGATC	1 cut(s)	92
AcsI	RAATTY	4 cut(s)	76, 83, 268, 478
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	3 cut(s)	92, 331, 417
AfiI	CCNNNNNNNGG	3 cut(s)	100, 182, 440
AgsI	TTSAA	1 cut(s)	299
AhdI	GACNNNNNGTC	1 cut(s)	512
AjuI	GAANNNNNNNTTGG	2 cut(s)	502, 534
AluBI	AGCT	3 cut(s)	326, 344, 558
AluI	AGCT	3 cut(s)	326, 344, 558
Alw21I	GWGCWC	2 cut(s)	398, 550
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	92
AlwNI	CAGNNNCTG	1 cut(s)	317
Aor13HI	TCCGGA	1 cut(s)	100
AoxI	GGCC	1 cut(s)	197
ApeKI	GCWGC	1 cut(s)	47
ApoI	RAATTY	4 cut(s)	76, 83, 268, 478
Asp700I	GAANNNNTTC	1 cut(s)	294
AspS9I	GGNCC	1 cut(s)	506
AsuHPI	GGTGA	2 cut(s)	475, 487
AvaII	GGWCC	1 cut(s)	506
BaeGI	GKGCMC	1 cut(s)	446
BanII	GRGCYC	1 cut(s)	354
Bbv12I	GWGCWC	2 cut(s)	398, 550
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	2 cut(s)	381, 454
BciVI	GTATCC	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	279
BfaI	CTAG	1 cut(s)	51
BfuI	GTATCC	1 cut(s)	208
BglII	AGATCT	1 cut(s)	115
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme18I	GGWCC	1 cut(s)	506
BmeRI	GACNNNNNGTC	1 cut(s)	512
BmgT120I	GGNCC	1 cut(s)	506
BpmI	CTGGAG	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	194, 434
BsaWI	WCCGGW	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 182, 440
Bse1I	ACTGG	3 cut(s)	176, 286, 388
BseAI	TCCGGA	1 cut(s)	100
BseDI	CCNNGG	2 cut(s)	194, 434
BseGI	GGATG	3 cut(s)	105, 392, 465
BseLI	CCNNNNNNNGG	3 cut(s)	100, 182, 440
BseMII	CTCAG	2 cut(s)	215, 524
BseNI	ACTGG	3 cut(s)	176, 286, 388
BseRI	GAGGAG	1 cut(s)	183
BseSI	GKGCMC	1 cut(s)	446
BseXI	GCAGC	1 cut(s)	34
BshFI	GGCC	1 cut(s)	199
BsiHKAI	GWGCWC	2 cut(s)	398, 550
BsiSI	CCGG	1 cut(s)	101
BslI	CCNNNNNNNGG	3 cut(s)	100, 182, 440
BsmAI	GTCTC	1 cut(s)	279
BsmBI	CGTCTC	1 cut(s)	279
BsmI	GAATGC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	199
Bsp1286I	GDGCHC	4 cut(s)	354, 398, 446, 550
Bsp13I	TCCGGA	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	97, 115
BspACI	CCGC	1 cut(s)	16
BspANI	GGCC	1 cut(s)	199
BspCNI	CTCAG	2 cut(s)	214, 525
BspEI	TCCGGA	1 cut(s)	100
BspPI	GGATC	1 cut(s)	92
BsrI	ACTGG	3 cut(s)	176, 286, 388
BssECI	CCNNGG	2 cut(s)	194, 434
BssMI	GATC	2 cut(s)	97, 115
BssT1I	CCWWGG	1 cut(s)	434
Bst4CI	ACNGT	2 cut(s)	334, 514
BstC8I	GCNNGC	1 cut(s)	250
BstDEI	CTNAG	3 cut(s)	6, 201, 533
BstF5I	GGATG	3 cut(s)	105, 392, 465
BstKTI	GATC	2 cut(s)	100, 118
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	2 cut(s)	97, 115
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 130
BstSLI	GKGCMC	1 cut(s)	446
BstV1I	GCAGC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	199
BtsCI	GGATG	3 cut(s)	105, 392, 465
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	250
CaiI	CAGNNNCTG	1 cut(s)	317
Cfr13I	GGNCC	1 cut(s)	506
Csp6I	GTAC	3 cut(s)	91, 330, 416
CviAII	CATG	3 cut(s)	110, 245, 456
CviJI	RGCY	6 cut(s)	175, 199, 326, 344, 352, 558
CviKI_1	RGCY	6 cut(s)	175, 199, 326, 344, 352, 558
CviQI	GTAC	3 cut(s)	91, 330, 416
DdeI	CTNAG	3 cut(s)	6, 201, 533
DpnI	GATC	2 cut(s)	99, 117
DpnII	GATC	2 cut(s)	97, 115
DraI	TTTAAA	1 cut(s)	267
DriI	GACNNNNNGTC	1 cut(s)	512
Eam1105I	GACNNNNNGTC	1 cut(s)	512
Eco130I	CCWWGG	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	506
Eco57I	CTGAAG	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	83
EcoT14I	CCWWGG	1 cut(s)	434
EcoT38I	GRGCYC	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	434
Esp3I	CGTCTC	1 cut(s)	279
FaeI	CATG	3 cut(s)	113, 248, 459
FaiI	YATR	8 cut(s)	111, 149, 157, 246, 374, 457, 523, 543
FatI	CATG	3 cut(s)	109, 244, 455
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	3 cut(s)	92, 399, 472
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	1 cut(s)	48
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	199
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	3 cut(s)	113, 248, 459
HinfI	GANTC	2 cut(s)	314, 426
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	2 cut(s)	475, 487
Hpy188I	TCNGA	2 cut(s)	204, 313
Hpy188III	TCNNGA	3 cut(s)	101, 276, 378
HpyAV	CCTTC	3 cut(s)	13, 175, 226
HpyCH4III	ACNGT	2 cut(s)	334, 514
HpyCH4V	TGCA	3 cut(s)	124, 209, 320
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 130
HpyF3I	CTNAG	3 cut(s)	6, 201, 533
Hsp92II	CATG	3 cut(s)	113, 248, 459
Kpn2I	TCCGGA	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	97, 115
LmnI	GCTCC	3 cut(s)	341, 401, 553
LpnPI	CCDG	9 cut(s)	108, 114, 189, 234, 267, 315, 369, 452, 474
Lsp1109I	GCAGC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	51
MalI	GATC	2 cut(s)	99, 117
MboI	GATC	2 cut(s)	97, 115
MboII	GAAGA	7 cut(s)	22, 26, 35, 125, 163, 233, 371
MfeI	CAATTG	1 cut(s)	134
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	4 cut(s)	354, 398, 446, 550
MluCI	AATT	5 cut(s)	76, 83, 134, 268, 478
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	8 cut(s)	201, 204, 205, 210, 384, 416, 496, 497
MroI	TCCGGA	1 cut(s)	100
MroXI	GAANNNNTTC	1 cut(s)	294
MseI	TTAA	3 cut(s)	266, 554, 562
MspI	CCGG	1 cut(s)	101
MunI	CAATTG	1 cut(s)	134
Mva1269I	GAATGC	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	47, 130
NdeII	GATC	2 cut(s)	97, 115
NlaIII	CATG	3 cut(s)	113, 248, 459
NmeAIII	GCCGAG	1 cut(s)	175
PctI	GAATGC	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	426
PflMI	CCANNNNNTGG	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
PspPI	GGNCC	1 cut(s)	506
PstNI	CAGNNNCTG	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	115
RsaI	GTAC	3 cut(s)	92, 331, 417
RsaNI	GTAC	3 cut(s)	91, 330, 416
SaqAI	TTAA	3 cut(s)	266, 554, 562
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	2 cut(s)	97, 115
Sau96I	GGNCC	1 cut(s)	506
SchI	GAGTC	1 cut(s)	308
SduI	GDGCHC	4 cut(s)	354, 398, 446, 550
SetI	ASST	9 cut(s)	67, 167, 262, 304, 328, 346, 395, 488, 560
SinI	GGWCC	1 cut(s)	506
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	5 cut(s)	76, 83, 134, 268, 478
SsiI	CCGC	1 cut(s)	16
SspMI	CTAG	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	2 cut(s)	334, 514
TaqI	TCGA	2 cut(s)	87, 275
TaqII	GACCGA	1 cut(s)	143
TasI	AATT	5 cut(s)	76, 83, 134, 268, 478
TfiI	GAWTC	1 cut(s)	426
Tru1I	TTAA	3 cut(s)	266, 554, 562
Tru9I	TTAA	3 cut(s)	266, 554, 562
TscAI	CASTG	1 cut(s)	183
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	5 cut(s)	126, 164, 261, 361, 510
TspGWI	ACGGA	1 cut(s)	540
TspRI	CASTG	1 cut(s)	183
Van91I	CCANNNNNTGG	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	506
XapI	RAATTY	4 cut(s)	76, 83, 268, 478
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.