Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000544

Physical Location & Seq

Genomic Coordinates Reverse (-)

4475780 .. 4479241

Gene Structure 3462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016176

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGACCGTGCTCTATATCGGTATGATCACAAGTTGCCCATTGGCGCATTGAACCCGAACAATGTGCGGGTTGTTGATAACGCTGTTCTGCTGCCAGAGGTTGGGTCAGGACCTGAAGATTATAATTATGGCGCCAGGATCAAGGAATTTGTTACTGGGACTTTTGGGGAAACAGGGGATTGGGAAGATATCTCTATTTCCTCATCACTGTTGGGTATTGCAGGGCTAAACAGGTGGAAGCTTGAGGACGACATAAAACACTTTGGCACTGGCATCTCTCACCTCCAGGACACAAAGAAAAGATTTAATATCAAATTCCTAAGGCGAGACTCATCAAAATCTGCCCAACAGCTTGCGTCTCAGTATGATACTTTGCATGATACTGATCTGTCATCTTTCATCAACAAGATTCATTTGAATTTGAATTTGAATTTGCGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009506 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0030054 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

148

Amino Acids

16.65

Weight (kDa)

6.51

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04860 FvH4_1g04920 FvH4_1g05010 FvH4_1g07320 FvH4_5g09280 FvH4_5g09280 FvH4_5g09280
rosa_chinensis	RchiOBHm_Chr2g0088841 RchiOBHm_Chr2g0089881 RchiOBHm_Chr2g0089901 RchiOBHm_Chr2g0089911 RchiOBHm_Chr2g0089921 RchiOBHm_Chr2g0090621 RchiOBHm_Chr2g0091091 RchiOBHm_Chr5g0019481 RchiOBHm_Chr5g0019491
rosa_laevigata	RLG00000016078 RLG00000016112 RLG00000016113 RLG00000016126 RLG00000016176 RLG00000016179 RLG00000016217 RLG00000019062 RLG00000032446 RLG00000032447 RLG00000032450
rosa_multiflora	Rmu_sc0000259.1_g000018 Rmu_sc0000779.1_g000022 Rmu_sc0002515.1_g000014 Rmu_sc0002759.1_g000046 Rmu_sc0002986.1_g000072 Rmu_sc0005230.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058560 Rroxscaffold_1G00058570 Rroxscaffold_1G00074340 Rroxscaffold_2G00150150 Rroxscaffold_2G00150970 Rroxscaffold_2G00151500 Rroxscaffold_4G00332590
rosa_rugosa	Rorug01G0127100 Rorug02G0009600 Rorug05G0051100 Rorug07G0229300
rosa_samantha	Rh2AG050300 Rh2AG050400 Rh2AG055000 Rh2AG055100 Rh2AG058600 Rh2AG058900 Rh2AG062100 Rh2BG048900 Rh2BG053100 Rh2BG053900 Rh2BG057400 Rh2BG061100 Rh2CG051100 Rh2CG055100 Rh2CG056100 Rh2CG059300 Rh2CG063200 Rh2DG049400 Rh2DG050300 Rh2DG050400 Rh2DG050500 Rh2DG055300 Rh2DG061700 Rh2DG362200 Rh4AG113200 Rh5AG141500 Rh5AG142000 Rh5AG142100 Rh5BG140400 Rh5BG140500 Rh5CG152300 Rh5CG152400 Rh5CG152500 Rh5CG152600 Rh5DG141100 Rh7DG375200
rosa_wichuraiana	Rw2G004030 Rw2G004800 Rw2G005060 Rw7G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	123
AccB1I	GGYRCC	1 cut(s)	131
AccB7I	CCANNNNNTGG	1 cut(s)	101
AciI	CCGC	1 cut(s)	67
AclWI	GGATC	1 cut(s)	146
AcsI	RAATTY	5 cut(s)	146, 314, 418, 424, 430
AcuI	CTGAAG	1 cut(s)	135
AcyI	GRCGYC	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	4 cut(s)	52, 418, 424, 430
AjnI	CCWGG	2 cut(s)	134, 285
AluBI	AGCT	2 cut(s)	241, 352
AluI	AGCT	2 cut(s)	241, 352
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	2 cut(s)	321, 363
AlwI	GGATC	1 cut(s)	146
AlwNI	CAGNNNCTG	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	5 cut(s)	146, 314, 418, 424, 430
AspLEI	GCGC	2 cut(s)	47, 134
AspS9I	GGNCC	2 cut(s)	4, 110
AsuHPI	GGTGA	1 cut(s)	272
AvaII	GGWCC	2 cut(s)	4, 110
AxyI	CCTNAGG	1 cut(s)	320
BanI	GGYRCC	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	78
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BciT130I	CCWGG	2 cut(s)	136, 287
BclI	TGATCA	1 cut(s)	25
BcoDI	GTCTC	2 cut(s)	321, 363
BfoI	RGCGCY	1 cut(s)	135
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
Bme1390I	CCNGG	2 cut(s)	136, 287
Bme18I	GGWCC	2 cut(s)	4, 110
BmgT120I	GGNCC	2 cut(s)	4, 110
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	2 cut(s)	136, 287
BmrI	ACTGGG	1 cut(s)	165
BmsI	GCATC	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	263
BsaBI	GATNNNNATC	1 cut(s)	384
BsaHI	GRCGYC	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse1I	ACTGG	2 cut(s)	160, 274
Bse21I	CCTNAGG	1 cut(s)	320
Bse8I	GATNNNNATC	1 cut(s)	384
BseBI	CCWGG	2 cut(s)	136, 287
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	2 cut(s)	160, 274
BseXI	GCAGC	1 cut(s)	78
BshNI	GGYRCC	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	13
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	2 cut(s)	321, 363
BsmBI	CGTCTC	1 cut(s)	363
BsmFI	GGGAC	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	3 cut(s)	25, 138, 385
BspACI	CCGC	1 cut(s)	67
BspCNI	CTCAG	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	133
BspPI	GGATC	1 cut(s)	146
BspT107I	GGYRCC	1 cut(s)	131
BsrI	ACTGG	2 cut(s)	160, 274
BssMI	GATC	3 cut(s)	25, 138, 385
BssNI	GRCGYC	1 cut(s)	132
Bst2UI	CCWGG	2 cut(s)	136, 287
Bst4CI	ACNGT	2 cut(s)	8, 210
BstACI	GRCGYC	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	2 cut(s)	320, 360
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	2 cut(s)	47, 134
BstKTI	GATC	3 cut(s)	28, 141, 388
BstMAI	GTCTC	2 cut(s)	321, 363
BstMBI	GATC	3 cut(s)	25, 138, 385
BstNI	CCWGG	2 cut(s)	136, 287
BstSCI	CCNGG	2 cut(s)	134, 285
BstV1I	GCAGC	1 cut(s)	78
Bsu36I	CCTNAGG	1 cut(s)	320
BtsIMutI	CAGTG	2 cut(s)	206, 267
Cac8I	GCNNGC	1 cut(s)	354
CaiI	CAGNNNCTG	1 cut(s)	113
CfoI	GCGC	2 cut(s)	47, 134
Cfr13I	GGNCC	2 cut(s)	4, 110
CseI	GACGC	2 cut(s)	345, 425
CviAII	CATG	1 cut(s)	377
CviJI	RGCY	3 cut(s)	226, 241, 352
CviKI_1	RGCY	3 cut(s)	226, 241, 352
DdeI	CTNAG	2 cut(s)	320, 360
DinI	GGCGCC	1 cut(s)	133
DpnI	GATC	3 cut(s)	27, 140, 387
DpnII	GATC	3 cut(s)	25, 138, 385
Eco32I	GATATC	1 cut(s)	190
Eco47I	GGWCC	2 cut(s)	4, 110
Eco57I	CTGAAG	1 cut(s)	135
Eco81I	CCTNAGG	1 cut(s)	320
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRII	CCWGG	2 cut(s)	134, 285
EcoRV	GATATC	1 cut(s)	190
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
Esp3I	CGTCTC	1 cut(s)	363
FaeI	CATG	1 cut(s)	380
FaiI	YATR	7 cut(s)	16, 24, 123, 129, 254, 366, 378
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	1 cut(s)	376
FauI	CCCGC	1 cut(s)	60
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	92
GlaI	GCGC	2 cut(s)	46, 133
GluI	GCNGC	1 cut(s)	92
GsuI	CTGGAG	1 cut(s)	269
HaeII	RGCGCY	1 cut(s)	135
HgaI	GACGC	2 cut(s)	345, 425
HhaI	GCGC	2 cut(s)	47, 134
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	1 cut(s)	380
Hin6I	GCGC	2 cut(s)	45, 132
HinP1I	GCGC	2 cut(s)	45, 132
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	2 cut(s)	329, 409
HphI	GGTGA	1 cut(s)	272
Hpy188I	TCNGA	1 cut(s)	443
Hpy188III	TCNNGA	1 cut(s)	108
HpyCH4III	ACNGT	2 cut(s)	8, 210
HpyCH4V	TGCA	2 cut(s)	221, 376
HpyF3I	CTNAG	2 cut(s)	320, 360
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	380
HspAI	GCGC	2 cut(s)	45, 132
KasI	GGCGCC	1 cut(s)	131
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	25, 138, 385
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	3 cut(s)	27, 140, 387
MboI	GATC	3 cut(s)	25, 138, 385
MboII	GAAGA	2 cut(s)	128, 197
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	6 cut(s)	124, 146, 314, 418, 424, 430
Mly113I	GGCGCC	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	4 cut(s)	91, 211, 238, 293
MseI	TTAA	1 cut(s)	306
MspR9I	CCNGG	2 cut(s)	136, 287
MvaI	CCWGG	2 cut(s)	136, 287
NarI	GGCGCC	1 cut(s)	132
NdeII	GATC	3 cut(s)	25, 138, 385
NlaIII	CATG	1 cut(s)	380
NlaIV	GGNNCC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	409
PflMI	CCANNNNNTGG	1 cut(s)	101
PfoI	TCCNGGA	1 cut(s)	285
PkrI	GCNGC	1 cut(s)	93
PleI	GAGTC	1 cut(s)	323
PluTI	GGCGCC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	323
PpuMI	RGGWCCY	1 cut(s)	110
PsiI	TTATAA	1 cut(s)	123
Psp5II	RGGWCCY	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	134, 285
PspGI	CCWGG	2 cut(s)	134, 285
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	2 cut(s)	4, 110
PspPPI	RGGWCCY	1 cut(s)	110
PstNI	CAGNNNCTG	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	3 cut(s)	25, 138, 385
Sau96I	GGNCC	2 cut(s)	4, 110
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	2 cut(s)	136, 287
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	6 cut(s)	102, 115, 236, 243, 285, 354
SfaNI	GCATC	1 cut(s)	282
SfoI	GGCGCC	1 cut(s)	133
SinI	GGWCC	2 cut(s)	4, 110
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	6 cut(s)	124, 146, 314, 418, 424, 430
SsiI	CCGC	1 cut(s)	67
SspDI	GGCGCC	1 cut(s)	131
StyD4I	CCNGG	2 cut(s)	134, 285
TaaI	ACNGT	2 cut(s)	8, 210
TasI	AATT	6 cut(s)	124, 146, 314, 418, 424, 430
TfiI	GAWTC	1 cut(s)	409
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	2 cut(s)	213, 274
TseI	GCWGC	1 cut(s)	91
TspDTI	ATGAA	2 cut(s)	388, 401
TspRI	CASTG	2 cut(s)	213, 274
Van91I	CCANNNNNTGG	1 cut(s)	101
VpaK11BI	GGWCC	2 cut(s)	4, 110
XapI	RAATTY	5 cut(s)	146, 314, 418, 424, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.