Rh2AG055000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000544
Physical Location & Seq
Reverse (-)
4337833 .. 4340769
2937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG055000.1

Sequence Viewer

Length: 825 bp
ATGGCCGAGAGACGTTCTGAGCGAAGGCGTGGCAGAGGCGAATGTATCCAGGATACGATCGATGGCTTGGGATGGATATTCTATGAGGTCGTCAACTGGAAGAATGAATTGCTATGGGATGTCTTAGATGAAGTAGCATTTAGATGGGCTAACAGTATGGCTGTACCTCCCTTGGATACATACACTGTCAAAGTCAGGGATAACAAAGCCTATATTCCGAGGGAAGGCTCTCAAAACGATTCTTGGAACTACGCAATTCGGTATCGGGATTTCATTCTTTCTGTTTATGGCCCTGTGGCAGATAATAGGCTTCTTGAGGACTTTTGTAGAAAGCTGAGTGACCCAACCCTCACACTGCTCAGATTTCAGAATTTGTATTTCCATAAACTTTTACAAAGCCGGGAGGAAATCAATGACTTCCCAGTAGTGGCGGTTGAAAACCTCCGGCTTAGGAAGTTTGATTACAATGGGAGAGAGTGCAATTGGGATGTAGCTTATCGATTGTGGGCAGAGGAGAAATACCACAGGGAGATTAATCTTTTTGAAACTTGCATAAAAAACATTTATGTGTGGAGAGCCTACAAGTACAGAATTTACGGTGATAATCCCACAGATGAAGCCGAGCTAGTGCGTAATCTCATCATCCACTTCAACCAGTGCAGGATGAAGGATGTTCCCCCACCTGCAGATTTCTTTGATAAAAATCAAATTGGAGAAGTGGTATTTGACCTCTTTCCTAATATTGGTTCCAGCCTCTTTCATTTCATGTACGAACATGGAGTTTATATGGACTTCACAGAACTTCGTACATTTTACAGAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

33.06

Weight (kDa)

5.55

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 691
Acc36I ACCTGC 1 cut(s) 691
AciI CCGC 1 cut(s) 431
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 370, 591
AfaI GTAC 4 cut(s) 165, 587, 770, 808
AfiI CCNNNNNNNGG 3 cut(s) 224, 427, 743
AgsI TTSAA 3 cut(s) 437, 545, 652
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 3 cut(s) 334, 494, 625
AluI AGCT 3 cut(s) 334, 494, 625
Alw26I GTCTC 1 cut(s) 4
AoxI GGCC 2 cut(s) 3, 289
ApoI RAATTY 2 cut(s) 370, 591
AseI ATTAAT 1 cut(s) 534
AspS9I GGNCC 1 cut(s) 290
AsuC2I CCSGG 1 cut(s) 401
AsuHPI GGTGA 1 cut(s) 611
BarI GAAGNNNNNNTAC 2 cut(s) 446, 478
BccI CCATC 3 cut(s) 56, 66, 138
BciT130I CCWGG 1 cut(s) 50
BciVI GTATCC 3 cut(s) 46, 56, 169
BcnI CCSGG 1 cut(s) 401
BcoDI GTCTC 1 cut(s) 4
BfaI CTAG 1 cut(s) 626
BfmI CTRYAG 1 cut(s) 684
BfuAI ACCTGC 1 cut(s) 691
BfuI GTATCC 3 cut(s) 46, 56, 169
Bme1390I CCNGG 2 cut(s) 50, 401
BmgT120I GGNCC 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 748
BmrFI CCNGG 2 cut(s) 50, 401
BmrI ACTGGG 1 cut(s) 416
BmuI ACTGGG 1 cut(s) 416
Bpu10I CCTNAGC 1 cut(s) 449
BpuEI CTTGAG 1 cut(s) 335
BpuMI CCSGG 1 cut(s) 401
Bsa29I ATCGAT 2 cut(s) 60, 499
BsaBI GATNNNNATC 1 cut(s) 702
BsaJI CCNNGG 2 cut(s) 171, 218
BsaXI ACNNNNNCTCC 2 cut(s) 705, 735
Bsc4I CCNNNNNNNGG 3 cut(s) 224, 427, 743
Bse1I ACTGG 3 cut(s) 101, 422, 655
Bse8I GATNNNNATC 1 cut(s) 702
BseBI CCWGG 1 cut(s) 50
BseCI ATCGAT 2 cut(s) 60, 499
BseDI CCNNGG 2 cut(s) 171, 218
BseGI GGATG 6 cut(s) 77, 124, 493, 642, 669, 676
BseJI GATNNNNATC 1 cut(s) 702
BseLI CCNNNNNNNGG 3 cut(s) 224, 427, 743
BseMII CTCAG 3 cut(s) 9, 326, 373
BseNI ACTGG 3 cut(s) 101, 422, 655
BseRI GAGGAG 1 cut(s) 527
BsgI GTGCAG 1 cut(s) 679
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 2 cut(s) 5, 291
BshVI ATCGAT 2 cut(s) 60, 499
BsiEI CGRYCG 1 cut(s) 60
BsiSI CCGG 2 cut(s) 400, 445
BslI CCNNNNNNNGG 3 cut(s) 224, 427, 743
BsmAI GTCTC 1 cut(s) 4
BsmBI CGTCTC 1 cut(s) 4
BsnI GGCC 2 cut(s) 5, 291
Bsp143I GATC 1 cut(s) 57
BspACI CCGC 1 cut(s) 431
BspANI GGCC 2 cut(s) 5, 291
BspCNI CTCAG 3 cut(s) 10, 327, 372
BspDI ATCGAT 2 cut(s) 60, 499
BspLI GGNNCC 1 cut(s) 748
BspMAI CTGCAG 1 cut(s) 688
BspMI ACCTGC 1 cut(s) 691
BsrI ACTGG 3 cut(s) 101, 422, 655
BssECI CCNNGG 2 cut(s) 171, 218
BssMI GATC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 3 cut(s) 155, 187, 599
BstDEI CTNAG 5 cut(s) 18, 124, 335, 359, 449
BstF5I GGATG 6 cut(s) 77, 124, 493, 642, 669, 676
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 1 cut(s) 4
BstMBI GATC 1 cut(s) 57
BstMCI CGRYCG 1 cut(s) 60
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 48, 399
BstSFI CTRYAG 1 cut(s) 684
Bsu15I ATCGAT 2 cut(s) 60, 499
BsuI GTATCC 3 cut(s) 46, 56, 169
BsuRI GGCC 2 cut(s) 5, 291
BsuTUI ATCGAT 2 cut(s) 60, 499
BtsCI GGATG 6 cut(s) 77, 124, 493, 642, 669, 676
BtsI GCAGTG 1 cut(s) 353
BtsIMutI CAGTG 3 cut(s) 183, 353, 662
BveI ACCTGC 1 cut(s) 691
Cfr13I GGNCC 1 cut(s) 290
ClaI ATCGAT 2 cut(s) 60, 499
Csp6I GTAC 4 cut(s) 164, 586, 769, 807
CviAII CATG 2 cut(s) 766, 776
CviQI GTAC 4 cut(s) 164, 586, 769, 807
DdeI CTNAG 5 cut(s) 18, 124, 335, 359, 449
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
Esp3I CGTCTC 1 cut(s) 4
FaeI CATG 2 cut(s) 769, 779
FatI CATG 2 cut(s) 765, 775
FokI GGATG 6 cut(s) 84, 131, 500, 629, 676, 683
FspBI CTAG 1 cut(s) 626
HaeIII GGCC 2 cut(s) 5, 291
HapII CCGG 2 cut(s) 400, 445
Hin1II CATG 2 cut(s) 769, 779
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 1 cut(s) 239
HpaII CCGG 2 cut(s) 400, 445
HphI GGTGA 1 cut(s) 611
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 4 cut(s) 19, 219, 362, 369
Hpy188III TCNNGA 2 cut(s) 266, 314
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 3 cut(s) 18, 218, 661
HpyCH4III ACNGT 3 cut(s) 155, 187, 599
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 4 cut(s) 480, 552, 660, 686
HpyF3I CTNAG 5 cut(s) 18, 124, 335, 359, 449
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 2 cut(s) 769, 779
Kzo9I GATC 1 cut(s) 57
MaeI CTAG 1 cut(s) 626
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 1 cut(s) 338
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 1 cut(s) 112
MfeI CAATTG 1 cut(s) 481
MluCI AATT 6 cut(s) 107, 255, 370, 481, 591, 708
MseI TTAA 1 cut(s) 534
MslI CAYNNNNRTG 2 cut(s) 142, 566
MspI CCGG 2 cut(s) 400, 445
MspR9I CCNGG 2 cut(s) 50, 401
MunI CAATTG 1 cut(s) 481
MvaI CCWGG 1 cut(s) 50
NciI CCSGG 1 cut(s) 401
NdeII GATC 1 cut(s) 57
NlaIII CATG 2 cut(s) 769, 779
NlaIV GGNNCC 1 cut(s) 748
NmeAIII GCCGAG 2 cut(s) 31, 646
NmuCI GTSAC 1 cut(s) 338
PaqCI CACCTGC 1 cut(s) 691
PcsI WCGNNNNNNNCGW 1 cut(s) 19
PfeI GAWTC 1 cut(s) 239
PfoI TCCNGGA 1 cut(s) 48
Ple19I CGATCG 1 cut(s) 60
PshBI ATTAAT 1 cut(s) 534
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 748
PspPI GGNCC 1 cut(s) 290
PstI CTGCAG 1 cut(s) 688
PvuI CGATCG 1 cut(s) 60
RsaI GTAC 4 cut(s) 165, 587, 770, 808
RsaNI GTAC 4 cut(s) 164, 586, 769, 807
RseI CAYNNNNRTG 2 cut(s) 142, 566
SaqAI TTAA 1 cut(s) 534
Sau3AI GATC 1 cut(s) 57
Sau96I GGNCC 1 cut(s) 290
ScrFI CCNGG 2 cut(s) 50, 401
SetI ASST 9 cut(s) 16, 90, 169, 336, 444, 496, 627, 685, 732
SfcI CTRYAG 1 cut(s) 684
SmiMI CAYNNNNRTG 2 cut(s) 142, 566
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 6 cut(s) 107, 255, 370, 481, 591, 708
SsiI CCGC 1 cut(s) 431
SspI AATATT 1 cut(s) 742
SspMI CTAG 1 cut(s) 626
StyD4I CCNGG 2 cut(s) 48, 399
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 3 cut(s) 155, 187, 599
TaiI ACGT 1 cut(s) 16
TaqI TCGA 2 cut(s) 60, 499
TasI AATT 6 cut(s) 107, 255, 370, 481, 591, 708
TatI WGTACW 1 cut(s) 585
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TscAI CASTG 3 cut(s) 190, 360, 662
TseFI GTSAC 1 cut(s) 338
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 7 cut(s) 120, 144, 262, 630, 680, 749, 754
TspRI CASTG 3 cut(s) 190, 360, 662
VspI ATTAAT 1 cut(s) 534
XapI RAATTY 2 cut(s) 370, 591
XspI CTAG 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.