The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TPR_COPA_B | PF23953 | 120 - 192 | 9.9e-17 | COPA/B TPR domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 62 |
| AccBSI | CCGCTC | 1 cut(s) | 247 |
| AciI | CCGC | 4 cut(s) | 28, 217, 221, 247 |
| AclWI | GGATC | 1 cut(s) | 589 |
| AcsI | RAATTY | 2 cut(s) | 107, 574 |
| AcuI | CTGAAG | 2 cut(s) | 96, 447 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 27, 62, 568 |
| AgsI | TTSAA | 3 cut(s) | 13, 315, 525 |
| AjnI | CCWGG | 2 cut(s) | 284, 301 |
| AleI | CACNNNNGTG | 1 cut(s) | 23 |
| AluBI | AGCT | 2 cut(s) | 385, 398 |
| AluI | AGCT | 2 cut(s) | 385, 398 |
| AlwI | GGATC | 1 cut(s) | 589 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 74 |
| ApeKI | GCWGC | 4 cut(s) | 52, 214, 382, 500 |
| ApoI | RAATTY | 2 cut(s) | 107, 574 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 194, 310 |
| AspLEI | GCGC | 1 cut(s) | 255 |
| AspS9I | GGNCC | 3 cut(s) | 71, 223, 282 |
| AvaII | GGWCC | 3 cut(s) | 71, 223, 282 |
| BbvI | GCAGC | 4 cut(s) | 39, 226, 394, 487 |
| BccI | CCATC | 1 cut(s) | 264 |
| BciT130I | CCWGG | 2 cut(s) | 286, 303 |
| BfaI | CTAG | 1 cut(s) | 321 |
| BfmI | CTRYAG | 1 cut(s) | 501 |
| BisI | GCNGC | 4 cut(s) | 53, 215, 383, 501 |
| BlsI | GCNGC | 4 cut(s) | 54, 216, 384, 502 |
| Bme1390I | CCNGG | 2 cut(s) | 286, 303 |
| Bme18I | GGWCC | 3 cut(s) | 71, 223, 282 |
| BmgT120I | GGNCC | 3 cut(s) | 71, 223, 282 |
| BmrFI | CCNGG | 2 cut(s) | 286, 303 |
| BmrI | ACTGGG | 1 cut(s) | 126 |
| BmsI | GCATC | 2 cut(s) | 240, 487 |
| BmuI | ACTGGG | 1 cut(s) | 126 |
| BsaAI | YACGTR | 1 cut(s) | 586 |
| BsaBI | GATNNNNATC | 1 cut(s) | 153 |
| BsaJI | CCNNGG | 1 cut(s) | 102 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 27, 62, 568 |
| Bse118I | RCCGGY | 1 cut(s) | 225 |
| Bse1I | ACTGG | 2 cut(s) | 121, 284 |
| Bse8I | GATNNNNATC | 1 cut(s) | 153 |
| BseBI | CCWGG | 2 cut(s) | 286, 303 |
| BseDI | CCNNGG | 1 cut(s) | 102 |
| BseGI | GGATG | 1 cut(s) | 255 |
| BseJI | GATNNNNATC | 1 cut(s) | 153 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 27, 62, 568 |
| BseNI | ACTGG | 2 cut(s) | 121, 284 |
| BseXI | GCAGC | 4 cut(s) | 39, 226, 394, 487 |
| BseYI | CCCAGC | 1 cut(s) | 385 |
| BsiSI | CCGG | 1 cut(s) | 226 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 27, 62, 568 |
| BsmI | GAATGC | 1 cut(s) | 557 |
| Bsp143I | GATC | 2 cut(s) | 154, 594 |
| BspACI | CCGC | 4 cut(s) | 28, 217, 221, 247 |
| BspMAI | CTGCAG | 1 cut(s) | 505 |
| BspPI | GGATC | 1 cut(s) | 589 |
| BsrBI | CCGCTC | 1 cut(s) | 247 |
| BsrFI | RCCGGY | 1 cut(s) | 225 |
| BsrI | ACTGG | 2 cut(s) | 121, 284 |
| BssAI | RCCGGY | 1 cut(s) | 225 |
| BssECI | CCNNGG | 1 cut(s) | 102 |
| BssMI | GATC | 2 cut(s) | 154, 594 |
| BssT1I | CCWWGG | 1 cut(s) | 102 |
| Bst2UI | CCWGG | 2 cut(s) | 286, 303 |
| Bst4CI | ACNGT | 1 cut(s) | 171 |
| BstBAI | YACGTR | 1 cut(s) | 586 |
| BstC8I | GCNNGC | 2 cut(s) | 219, 231 |
| BstDEI | CTNAG | 1 cut(s) | 563 |
| BstF5I | GGATG | 1 cut(s) | 255 |
| BstHHI | GCGC | 1 cut(s) | 255 |
| BstKTI | GATC | 2 cut(s) | 157, 597 |
| BstMBI | GATC | 2 cut(s) | 154, 594 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 358, 465, 527 |
| BstNI | CCWGG | 2 cut(s) | 286, 303 |
| BstNSI | RCATGY | 1 cut(s) | 472 |
| BstSCI | CCNGG | 2 cut(s) | 284, 301 |
| BstSFI | CTRYAG | 1 cut(s) | 501 |
| BstSNI | TACGTA | 1 cut(s) | 586 |
| BstV1I | GCAGC | 4 cut(s) | 39, 226, 394, 487 |
| BtsCI | GGATG | 1 cut(s) | 255 |
| BtsIMutI | CAGTG | 2 cut(s) | 114, 167 |
| Cac8I | GCNNGC | 2 cut(s) | 219, 231 |
| CaiI | CAGNNNCTG | 1 cut(s) | 74 |
| CfoI | GCGC | 1 cut(s) | 255 |
| Cfr10I | RCCGGY | 1 cut(s) | 225 |
| Cfr13I | GGNCC | 3 cut(s) | 71, 223, 282 |
| CpoI | CGGWCCG | 1 cut(s) | 223 |
| CseI | GACGC | 1 cut(s) | 102 |
| CspI | CGGWCCG | 1 cut(s) | 223 |
| CviAII | CATG | 4 cut(s) | 264, 343, 469, 611 |
| CviJI | RGCY | 5 cut(s) | 16, 187, 229, 385, 398 |
| CviKI_1 | RGCY | 5 cut(s) | 16, 187, 229, 385, 398 |
| DdeI | CTNAG | 1 cut(s) | 563 |
| DpnI | GATC | 2 cut(s) | 156, 596 |
| DpnII | GATC | 2 cut(s) | 154, 594 |
| DraI | TTTAAA | 1 cut(s) | 294 |
| EciI | GGCGGA | 1 cut(s) | 236 |
| Eco105I | TACGTA | 1 cut(s) | 586 |
| Eco130I | CCWWGG | 1 cut(s) | 102 |
| Eco47I | GGWCC | 3 cut(s) | 71, 223, 282 |
| Eco57I | CTGAAG | 2 cut(s) | 96, 447 |
| EcoO109I | RGGNCCY | 1 cut(s) | 71 |
| EcoRII | CCWGG | 2 cut(s) | 284, 301 |
| EcoT14I | CCWWGG | 1 cut(s) | 102 |
| ErhI | CCWWGG | 1 cut(s) | 102 |
| FaeI | CATG | 4 cut(s) | 267, 346, 472, 614 |
| FaiI | YATR | 9 cut(s) | 265, 329, 339, 344, 401, 442, 444, 470, 612 |
| FatI | CATG | 4 cut(s) | 263, 342, 468, 610 |
| FauI | CCCGC | 2 cut(s) | 21, 210 |
| Fnu4HI | GCNGC | 4 cut(s) | 53, 215, 383, 501 |
| FokI | GGATG | 1 cut(s) | 262 |
| Fsp4HI | GCNGC | 4 cut(s) | 53, 215, 383, 501 |
| FspBI | CTAG | 1 cut(s) | 321 |
| GlaI | GCGC | 1 cut(s) | 254 |
| GluI | GCNGC | 4 cut(s) | 53, 215, 383, 501 |
| GsaI | CCCAGC | 1 cut(s) | 389 |
| HapII | CCGG | 1 cut(s) | 226 |
| HgaI | GACGC | 1 cut(s) | 102 |
| HhaI | GCGC | 1 cut(s) | 255 |
| Hin1II | CATG | 4 cut(s) | 267, 346, 472, 614 |
| Hin6I | GCGC | 1 cut(s) | 253 |
| HinP1I | GCGC | 1 cut(s) | 253 |
| HinfI | GANTC | 2 cut(s) | 195, 368 |
| HpaII | CCGG | 1 cut(s) | 226 |
| Hpy188III | TCNNGA | 1 cut(s) | 69 |
| HpyCH4III | ACNGT | 1 cut(s) | 171 |
| HpyCH4IV | ACGT | 1 cut(s) | 585 |
| HpyCH4V | TGCA | 6 cut(s) | 8, 44, 182, 202, 503, 557 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 358, 465, 527 |
| HpyF3I | CTNAG | 1 cut(s) | 563 |
| HpySE526I | ACGT | 1 cut(s) | 585 |
| Hsp92II | CATG | 4 cut(s) | 267, 346, 472, 614 |
| HspAI | GCGC | 1 cut(s) | 253 |
| Kzo9I | GATC | 2 cut(s) | 154, 594 |
| Lsp1109I | GCAGC | 4 cut(s) | 39, 226, 394, 487 |
| LweI | GCATC | 2 cut(s) | 240, 487 |
| MaeI | CTAG | 1 cut(s) | 321 |
| MaeII | ACGT | 1 cut(s) | 585 |
| MaeIII | GTNAC | 2 cut(s) | 471, 581 |
| MalI | GATC | 2 cut(s) | 156, 596 |
| MbiI | CCGCTC | 1 cut(s) | 247 |
| MboI | GATC | 2 cut(s) | 154, 594 |
| MboII | GAAGA | 4 cut(s) | 89, 158, 440, 477 |
| MfeI | CAATTG | 1 cut(s) | 525 |
| MluCI | AATT | 7 cut(s) | 85, 107, 306, 330, 347, 525, 574 |
| MnlI | CCTC | 4 cut(s) | 52, 415, 486, 609 |
| MroXI | GAANNNNTTC | 2 cut(s) | 194, 310 |
| MseI | TTAA | 1 cut(s) | 293 |
| MslI | CAYNNNNRTG | 1 cut(s) | 23 |
| MspA1I | CMGCKG | 2 cut(s) | 217, 385 |
| MspI | CCGG | 1 cut(s) | 226 |
| MspR9I | CCNGG | 2 cut(s) | 286, 303 |
| MunI | CAATTG | 1 cut(s) | 525 |
| Mva1269I | GAATGC | 1 cut(s) | 557 |
| MvaI | CCWGG | 2 cut(s) | 286, 303 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 358, 465, 527 |
| NdeII | GATC | 2 cut(s) | 154, 594 |
| NlaIII | CATG | 4 cut(s) | 267, 346, 472, 614 |
| NspI | RCATGY | 1 cut(s) | 472 |
| OliI | CACNNNNGTG | 1 cut(s) | 23 |
| PctI | GAATGC | 1 cut(s) | 557 |
| PdmI | GAANNNNTTC | 2 cut(s) | 194, 310 |
| PfeI | GAWTC | 2 cut(s) | 195, 368 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 62 |
| PfoI | TCCNGGA | 1 cut(s) | 301 |
| PkrI | GCNGC | 4 cut(s) | 54, 216, 384, 502 |
| Ppu21I | YACGTR | 1 cut(s) | 586 |
| PpuMI | RGGWCCY | 1 cut(s) | 71 |
| Psp5II | RGGWCCY | 1 cut(s) | 71 |
| Psp6I | CCWGG | 2 cut(s) | 284, 301 |
| PspFI | CCCAGC | 1 cut(s) | 385 |
| PspGI | CCWGG | 2 cut(s) | 284, 301 |
| PspPI | GGNCC | 3 cut(s) | 71, 223, 282 |
| PspPPI | RGGWCCY | 1 cut(s) | 71 |
| PstI | CTGCAG | 1 cut(s) | 505 |
| PstNI | CAGNNNCTG | 1 cut(s) | 74 |
| PvuII | CAGCTG | 1 cut(s) | 385 |
| RseI | CAYNNNNRTG | 1 cut(s) | 23 |
| Rsr2I | CGGWCCG | 1 cut(s) | 223 |
| RsrII | CGGWCCG | 1 cut(s) | 223 |
| SaqAI | TTAA | 1 cut(s) | 293 |
| SatI | GCNGC | 4 cut(s) | 53, 215, 383, 501 |
| Sau3AI | GATC | 2 cut(s) | 154, 594 |
| Sau96I | GGNCC | 3 cut(s) | 71, 223, 282 |
| ScrFI | CCNGG | 2 cut(s) | 286, 303 |
| SetI | ASST | 7 cut(s) | 63, 76, 287, 387, 400, 478, 588 |
| SfaNI | GCATC | 2 cut(s) | 240, 487 |
| SfcI | CTRYAG | 1 cut(s) | 501 |
| SinI | GGWCC | 3 cut(s) | 71, 223, 282 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 23 |
| SnaBI | TACGTA | 1 cut(s) | 586 |
| Sse9I | AATT | 7 cut(s) | 85, 107, 306, 330, 347, 525, 574 |
| SsiI | CCGC | 4 cut(s) | 28, 217, 221, 247 |
| SspI | AATATT | 1 cut(s) | 553 |
| SspMI | CTAG | 1 cut(s) | 321 |
| StyD4I | CCNGG | 2 cut(s) | 284, 301 |
| StyI | CCWWGG | 1 cut(s) | 102 |
| TaaI | ACNGT | 1 cut(s) | 171 |
| TaiI | ACGT | 1 cut(s) | 588 |
| TasI | AATT | 7 cut(s) | 85, 107, 306, 330, 347, 525, 574 |
| TfiI | GAWTC | 2 cut(s) | 195, 368 |
| Tru1I | TTAA | 1 cut(s) | 293 |
| Tru9I | TTAA | 1 cut(s) | 293 |
| TscAI | CASTG | 2 cut(s) | 121, 174 |
| TseI | GCWGC | 4 cut(s) | 52, 214, 382, 500 |
| TspDTI | ATGAA | 3 cut(s) | 252, 316, 359 |
| TspGWI | ACGGA | 1 cut(s) | 105 |
| TspRI | CASTG | 2 cut(s) | 121, 174 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 62 |
| VpaK11BI | GGWCC | 3 cut(s) | 71, 223, 282 |
| XapI | RAATTY | 2 cut(s) | 107, 574 |
| XceI | RCATGY | 1 cut(s) | 472 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 263 |
| XmnI | GAANNNNTTC | 2 cut(s) | 194, 310 |
| XspI | CTAG | 1 cut(s) | 321 |