Rh7DG375200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000544
Physical Location & Seq
Forward (+)
50957140 .. 50961044
3905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG375200.1

Sequence Viewer

Length: 660 bp
ATGGCTGTACATACATATGCCGTGAAAGTCAGGGATAACAAAGCCTATATTCCGAGACAAGGCTCTCGAAACGATTCTTGGAACTACACAATTCGGTATCGGGATTTCTTTCTTTCTGTTTATGGCCCTGTGGCAGATAATAGGCTTCTTGATGATTTTTGTAGAAGGCTGAGTGACCCAACCCTCACACTGCTCGGATTTCAGAATTTGTATTTCCATCAACTTTTACAAAGCCGGGAGGAAATCACTGACTTCCCAGTAATGGCGGTTGAAAACCTCCGGCTTAGGAAGTATCTTTACAACGAGACAGAGTGCAATTGGGATGTGGCATATCGATTGTGGGCAGAGGAGAAATACCACAAGGAGATTAATCTTTCTGAAACTTGCCTGAAAAACATTTATGCTTGGAGAGCCTACAATTACAGAATTTACACTGATAATCCCACAGATGAAGCCGAGCTAGTGCGTAATCTCATCATCCACTTCAACCAGTGCAGGATGAAGAATGTCCCCCCACCTGCAGATTTCTATGATAAACATCAAATTGGAGAAGTGGTATTCGACCTCTTTCCTGATATTGGTTCCAGCCTCTTTGATTTCATGTGCGAATGTGGAGTTTATATGGACTTCACGGCAGTTCGTACATTTTACAGAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

26.3

Weight (kDa)

5.6

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 526
Acc36I ACCTGC 1 cut(s) 526
AciI CCGC 1 cut(s) 266
AcsI RAATTY 2 cut(s) 205, 426
AfaI GTAC 2 cut(s) 9, 643
AfiI CCNNNNNNNGG 3 cut(s) 59, 262, 578
AgsI TTSAA 2 cut(s) 272, 487
AjuI GAANNNNNNNTTGG 2 cut(s) 61, 93
AluBI AGCT 1 cut(s) 460
AluI AGCT 1 cut(s) 460
Alw26I GTCTC 2 cut(s) 49, 299
AoxI GGCC 1 cut(s) 124
ApoI RAATTY 2 cut(s) 205, 426
AseI ATTAAT 1 cut(s) 369
Asp700I GAANNNNTTC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 236
BarI GAAGNNNNNNTAC 2 cut(s) 281, 313
BccI CCATC 1 cut(s) 225
BceAI ACGGC 2 cut(s) 5, 648
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 2 cut(s) 49, 299
BfaI CTAG 1 cut(s) 461
BfmI CTRYAG 1 cut(s) 519
BfuAI ACCTGC 1 cut(s) 526
Bme1390I CCNGG 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 583
BmrFI CCNGG 1 cut(s) 236
BmrI ACTGGG 1 cut(s) 251
BmuI ACTGGG 1 cut(s) 251
Bpu10I CCTNAGC 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 236
Bsa29I ATCGAT 1 cut(s) 334
BsaBI GATNNNNATC 1 cut(s) 537
BsaXI ACNNNNNCTCC 2 cut(s) 540, 570
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 262, 578
Bse1I ACTGG 2 cut(s) 257, 490
Bse8I GATNNNNATC 1 cut(s) 537
BseCI ATCGAT 1 cut(s) 334
BseGI GGATG 3 cut(s) 328, 477, 504
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 3 cut(s) 59, 262, 578
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 2 cut(s) 257, 490
BseRI GAGGAG 1 cut(s) 362
BsgI GTGCAG 1 cut(s) 514
BshFI GGCC 1 cut(s) 126
BshVI ATCGAT 1 cut(s) 334
BsiSI CCGG 2 cut(s) 235, 280
BslFI GGGAC 1 cut(s) 494
BslI CCNNNNNNNGG 3 cut(s) 59, 262, 578
BsmAI GTCTC 2 cut(s) 49, 299
BsmFI GGGAC 1 cut(s) 494
BsnI GGCC 1 cut(s) 126
Bsp1407I TGTACA 1 cut(s) 7
BspACI CCGC 1 cut(s) 266
BspANI GGCC 1 cut(s) 126
BspCNI CTCAG 1 cut(s) 162
BspDI ATCGAT 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 583
BspMAI CTGCAG 1 cut(s) 523
BspMI ACCTGC 1 cut(s) 526
BsrGI TGTACA 1 cut(s) 7
BsrI ACTGG 2 cut(s) 257, 490
BstAUI TGTACA 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 170, 284
BstF5I GGATG 3 cut(s) 328, 477, 504
BstMAI GTCTC 2 cut(s) 49, 299
BstMWI GCNNNNNNNGC 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 234
BstSFI CTRYAG 1 cut(s) 519
Bsu15I ATCGAT 1 cut(s) 334
BsuRI GGCC 1 cut(s) 126
BsuTUI ATCGAT 1 cut(s) 334
BtsCI GGATG 3 cut(s) 328, 477, 504
BtsI GCAGTG 1 cut(s) 188
BtsIMutI CAGTG 4 cut(s) 188, 246, 432, 497
BveI ACCTGC 1 cut(s) 526
Cfr13I GGNCC 1 cut(s) 125
ClaI ATCGAT 1 cut(s) 334
Csp6I GTAC 2 cut(s) 8, 642
CviAII CATG 1 cut(s) 601
CviQI GTAC 2 cut(s) 8, 642
DdeI CTNAG 2 cut(s) 170, 284
FaeI CATG 1 cut(s) 604
FaqI GGGAC 1 cut(s) 494
FatI CATG 1 cut(s) 600
FauNDI CATATG 1 cut(s) 16
FokI GGATG 3 cut(s) 335, 464, 511
FspBI CTAG 1 cut(s) 461
HaeIII GGCC 1 cut(s) 126
HapII CCGG 2 cut(s) 235, 280
Hin1II CATG 1 cut(s) 604
HinfI GANTC 1 cut(s) 74
HpaII CCGG 2 cut(s) 235, 280
Hpy188I TCNGA 4 cut(s) 54, 197, 204, 379
Hpy188III TCNNGA 4 cut(s) 66, 101, 149, 572
HpyAV CCTTC 1 cut(s) 159
HpyCH4V TGCA 3 cut(s) 315, 495, 521
HpyF10VI GCNNNNNNNGC 1 cut(s) 410
HpyF3I CTNAG 2 cut(s) 170, 284
Hsp92II CATG 1 cut(s) 604
MaeI CTAG 1 cut(s) 461
MaeIII GTNAC 1 cut(s) 173
MboII GAAGA 1 cut(s) 514
MfeI CAATTG 1 cut(s) 316
MluCI AATT 6 cut(s) 90, 205, 316, 418, 426, 543
MnlI CCTC 6 cut(s) 194, 232, 287, 340, 575, 599
MroXI GAANNNNTTC 1 cut(s) 73
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 1 cut(s) 15
MspI CCGG 2 cut(s) 235, 280
MspR9I CCNGG 1 cut(s) 236
MunI CAATTG 1 cut(s) 316
MwoI GCNNNNNNNGC 1 cut(s) 410
NciI CCSGG 1 cut(s) 236
NdeI CATATG 1 cut(s) 16
NlaIII CATG 1 cut(s) 604
NlaIV GGNNCC 1 cut(s) 583
NmeAIII GCCGAG 1 cut(s) 481
NmuCI GTSAC 1 cut(s) 173
PaqCI CACCTGC 1 cut(s) 526
PdmI GAANNNNTTC 1 cut(s) 73
PfeI GAWTC 1 cut(s) 74
PshBI ATTAAT 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 583
PspPI GGNCC 1 cut(s) 125
PstI CTGCAG 1 cut(s) 523
RsaI GTAC 2 cut(s) 9, 643
RsaNI GTAC 2 cut(s) 8, 642
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 1 cut(s) 369
Sau96I GGNCC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 236
SetI ASST 4 cut(s) 279, 462, 520, 567
SfcI CTRYAG 1 cut(s) 519
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 6 cut(s) 90, 205, 316, 418, 426, 543
SsiI CCGC 1 cut(s) 266
SspMI CTAG 1 cut(s) 461
StyD4I CCNGG 1 cut(s) 234
TaqI TCGA 3 cut(s) 67, 334, 561
TasI AATT 6 cut(s) 90, 205, 316, 418, 426, 543
TatI WGTACW 1 cut(s) 7
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 4 cut(s) 195, 253, 439, 497
TseFI GTSAC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 3 cut(s) 465, 515, 589
TspRI CASTG 4 cut(s) 195, 253, 439, 497
VspI ATTAAT 1 cut(s) 369
XapI RAATTY 2 cut(s) 205, 426
XmnI GAANNNNTTC 1 cut(s) 73
XspI CTAG 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.