Rmu_sc0000779.1_g000022

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000779.1
OG0000544
Physical Location & Seq
Forward (+)
126690 .. 129112
2423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000779.1_g000022.1.cds

Sequence Viewer

Length: 861 bp
atggttaaacgaagtagatcgtcgccgccgctgcgtacgataccggcgaaagccgtagttgctgactacgtcaaattttactccggcaacctctactatcccgttcactatgatgggaacgtgatctttttgatccctcaccgaattcttcaacgcctggaaagggatgtgttgtctgggctgctgacgcgatggaatgaaggaaagccgtgtgccccactcttgcctagtggggtaaaggttagggatcacagagccatccttcccaaaattgggtcagcgggagagcactatgattatcaagcgaattttttaaatttccatgaacatctctttgggaccaatggtacccaagaagattgcgatgatttccatatgaaattacgttcaccaaacctctccagggaacgctttgctgcacttttcttccacaagttcttgcagaacgaggaagaaagggcagacttccctgccgacacggtcgataatttgcaggacaccacattgtactacaggcgtcgggaaaggaagtggagtgacatttattcgttgtggcacaagggtcaaatcactctctcgaaggtgtccaagaagaaccattgggtccgttgtgtttataaatttcgtaaataccaagacaacccagtagatgaggcactgctcgtgcggaatatcggtaagcatttgaatgaacgccgagaaaaggccactcctcctgcacgtttgtataccaaatgtcgtaaaggggcggttgtccagagcgtattcccacaagttggcaacaagctgtacaacttcatgtgggacagaaaaatagatatggactttaaaaagtccttatctgttttcacatccccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

33.63

Weight (kDa)

9.71

Isoelectric Point (pI)

50.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 618
Acc65I GGTACC 1 cut(s) 347
AccB1I GGYRCC 1 cut(s) 347
AccB7I CCANNNNNTGG 1 cut(s) 776
AccI GTMKAC 1 cut(s) 728
AccII CGCG 1 cut(s) 190
AciI CCGC 5 cut(s) 26, 29, 281, 667, 749
AclWI GGATC 2 cut(s) 127, 255
AcsI RAATTY 5 cut(s) 74, 144, 307, 316, 620
AcyI GRCGYC 1 cut(s) 517
AfaI GTAC 4 cut(s) 37, 349, 509, 791
AfiI CCNNNNNNNGG 6 cut(s) 163, 272, 273, 403, 703, 776
AgsI TTSAA 2 cut(s) 152, 688
AjnI CCWGG 2 cut(s) 156, 401
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 1 cut(s) 787
AluI AGCT 1 cut(s) 787
Alw21I GWGCWC 1 cut(s) 291
AlwI GGATC 2 cut(s) 127, 255
AoxI GGCC 1 cut(s) 705
ApeKI GCWGC 3 cut(s) 31, 181, 416
ApoI RAATTY 5 cut(s) 74, 144, 307, 316, 620
Asp718I GGTACC 1 cut(s) 347
AspS9I GGNCC 2 cut(s) 339, 604
AsuHPI GGTGA 2 cut(s) 131, 381
AvaII GGWCC 2 cut(s) 339, 604
BaeGI GKGCMC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 347
BauI CACGAG 1 cut(s) 662
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 3 cut(s) 18, 168, 403
BccI CCATC 3 cut(s) 107, 186, 266
BceAI ACGGC 2 cut(s) 38, 193
BciT130I CCWGG 2 cut(s) 158, 403
BfaI CTAG 1 cut(s) 228
BfmI CTRYAG 1 cut(s) 511
BisI GCNGC 5 cut(s) 26, 29, 32, 182, 417
BlsI GCNGC 5 cut(s) 27, 30, 33, 183, 418
Bme1390I CCNGG 2 cut(s) 158, 403
Bme18I GGWCC 2 cut(s) 339, 604
BmgT120I GGNCC 2 cut(s) 339, 604
BmiI GGNNCC 3 cut(s) 340, 349, 605
BmrFI CCNGG 2 cut(s) 158, 403
BmrI ACTGGG 1 cut(s) 638
BmuI ACTGGG 1 cut(s) 638
BpmI CTGGAG 1 cut(s) 385
BsaHI GRCGYC 1 cut(s) 517
BsaJI CCNNGG 1 cut(s) 402
Bsc4I CCNNNNNNNGG 6 cut(s) 163, 272, 273, 403, 703, 776
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 644
BseBI CCWGG 2 cut(s) 158, 403
BseDI CCNNGG 1 cut(s) 402
BseGI GGATG 3 cut(s) 172, 258, 851
BseLI CCNNNNNNNGG 6 cut(s) 163, 272, 273, 403, 703, 776
BseNI ACTGG 1 cut(s) 644
BseRI GAGGAG 1 cut(s) 702
BseSI GKGCMC 1 cut(s) 217
BseXI GCAGC 3 cut(s) 18, 168, 403
BsgI GTGCAG 2 cut(s) 402, 702
Bsh1236I CGCG 1 cut(s) 190
Bsh1285I CGRYCG 1 cut(s) 483
BshFI GGCC 1 cut(s) 707
BshNI GGYRCC 1 cut(s) 347
BsiEI CGRYCG 1 cut(s) 483
BsiHKAI GWGCWC 1 cut(s) 291
BsiSI CCGG 2 cut(s) 44, 84
BsiWI CGTACG 1 cut(s) 35
BslFI GGGAC 2 cut(s) 352, 818
BslI CCNNNNNNNGG 6 cut(s) 163, 272, 273, 403, 703, 776
BsmFI GGGAC 2 cut(s) 352, 818
BsnI GGCC 1 cut(s) 707
Bsp1286I GDGCHC 2 cut(s) 217, 291
Bsp1407I TGTACA 1 cut(s) 789
Bsp143I GATC 4 cut(s) 17, 123, 132, 247
BspACI CCGC 5 cut(s) 26, 29, 281, 667, 749
BspANI GGCC 1 cut(s) 707
BspFNI CGCG 1 cut(s) 190
BspLI GGNNCC 3 cut(s) 340, 349, 605
BspPI GGATC 2 cut(s) 127, 255
BspT107I GGYRCC 1 cut(s) 347
BsrFI RCCGGY 1 cut(s) 43
BsrGI TGTACA 1 cut(s) 789
BsrI ACTGG 1 cut(s) 644
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 402
BssMI GATC 4 cut(s) 17, 123, 132, 247
BssNAI GTATAC 1 cut(s) 729
BssNI GRCGYC 1 cut(s) 517
BssSI CACGAG 1 cut(s) 662
Bst1107I GTATAC 1 cut(s) 729
Bst2BI CACGAG 1 cut(s) 662
Bst2UI CCWGG 2 cut(s) 158, 403
Bst4CI ACNGT 1 cut(s) 481
BstACI GRCGYC 1 cut(s) 517
BstAUI TGTACA 1 cut(s) 789
BstF5I GGATG 3 cut(s) 172, 258, 851
BstFNI CGCG 1 cut(s) 190
BstKTI GATC 4 cut(s) 20, 126, 135, 250
BstMBI GATC 4 cut(s) 17, 123, 132, 247
BstMCI CGRYCG 1 cut(s) 483
BstMWI GCNNNNNNNGC 3 cut(s) 31, 59, 187
BstNI CCWGG 2 cut(s) 158, 403
BstSCI CCNGG 2 cut(s) 156, 401
BstSFI CTRYAG 1 cut(s) 511
BstSLI GKGCMC 1 cut(s) 217
BstUI CGCG 1 cut(s) 190
BstV1I GCAGC 3 cut(s) 18, 168, 403
BstZ17I GTATAC 1 cut(s) 729
BsuRI GGCC 1 cut(s) 707
BtgZI GCGATG 2 cut(s) 205, 378
BtsCI GGATG 3 cut(s) 172, 258, 851
BtsI GCAGTG 1 cut(s) 656
BtsIMutI CAGTG 1 cut(s) 656
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 339, 604
CseI GACGC 2 cut(s) 196, 506
Csp6I GTAC 4 cut(s) 36, 348, 508, 790
CviAII CATG 2 cut(s) 323, 799
CviJI RGCY 6 cut(s) 53, 181, 208, 257, 707, 787
CviKI_1 RGCY 6 cut(s) 53, 181, 208, 257, 707, 787
CviQI GTAC 4 cut(s) 36, 348, 508, 790
DpnI GATC 4 cut(s) 19, 125, 134, 249
DpnII GATC 4 cut(s) 17, 123, 132, 247
DraI TTTAAA 2 cut(s) 315, 829
Eco47I GGWCC 2 cut(s) 339, 604
EcoRI GAATTC 1 cut(s) 144
EcoRII CCWGG 2 cut(s) 156, 401
FaeI CATG 2 cut(s) 326, 802
FaiI YATR 9 cut(s) 111, 294, 324, 375, 377, 618, 729, 800, 821
FaqI GGGAC 2 cut(s) 352, 818
FatI CATG 2 cut(s) 322, 798
FauI CCCGC 1 cut(s) 274
FauNDI CATATG 1 cut(s) 375
FblI GTMKAC 1 cut(s) 728
Fnu4HI GCNGC 5 cut(s) 26, 29, 32, 182, 417
FokI GGATG 3 cut(s) 179, 245, 838
Fsp4HI GCNGC 5 cut(s) 26, 29, 32, 182, 417
FspBI CTAG 1 cut(s) 228
GluI GCNGC 5 cut(s) 26, 29, 32, 182, 417
GsuI CTGGAG 1 cut(s) 385
HaeIII GGCC 1 cut(s) 707
HapII CCGG 2 cut(s) 44, 84
HgaI GACGC 2 cut(s) 196, 506
Hin1I GRCGYC 1 cut(s) 517
Hin1II CATG 2 cut(s) 326, 802
HpaII CCGG 2 cut(s) 44, 84
HphI GGTGA 2 cut(s) 131, 381
Hpy166II GTNNAC 3 cut(s) 106, 389, 729
Hpy188III TCNNGA 3 cut(s) 521, 577, 757
Hpy8I GTNNAC 3 cut(s) 106, 389, 729
Hpy99I CGWCG 2 cut(s) 25, 522
HpyAV CCTTC 3 cut(s) 194, 272, 574
HpyCH4III ACNGT 1 cut(s) 481
HpyCH4IV ACGT 4 cut(s) 69, 120, 385, 721
HpyCH4V TGCA 4 cut(s) 419, 442, 493, 719
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 59, 187
HpySE526I ACGT 4 cut(s) 69, 120, 385, 721
Hsp92I GRCGYC 1 cut(s) 517
Hsp92II CATG 2 cut(s) 326, 802
KpnI GGTACC 1 cut(s) 351
Kzo9I GATC 4 cut(s) 17, 123, 132, 247
Lsp1109I GCAGC 3 cut(s) 18, 168, 403
MaeI CTAG 1 cut(s) 228
MaeII ACGT 4 cut(s) 69, 120, 385, 721
MaeIII GTNAC 1 cut(s) 536
MalI GATC 4 cut(s) 19, 125, 134, 249
MboI GATC 4 cut(s) 17, 123, 132, 247
MboII GAAGA 5 cut(s) 140, 368, 418, 464, 604
MhlI GDGCHC 2 cut(s) 217, 291
MluCI AATT 8 cut(s) 74, 144, 270, 307, 316, 380, 487, 620
MnlI CCTC 6 cut(s) 101, 147, 407, 442, 646, 723
MseI TTAA 3 cut(s) 6, 314, 828
MslI CAYNNNNRTG 2 cut(s) 111, 687
MspA1I CMGCKG 2 cut(s) 31, 281
MspI CCGG 2 cut(s) 44, 84
MspR9I CCNGG 2 cut(s) 158, 403
MvaI CCWGG 2 cut(s) 158, 403
MvnI CGCG 1 cut(s) 190
MwoI GCNNNNNNNGC 3 cut(s) 31, 59, 187
NdeI CATATG 1 cut(s) 375
NdeII GATC 4 cut(s) 17, 123, 132, 247
NlaIII CATG 2 cut(s) 326, 802
NlaIV GGNNCC 3 cut(s) 340, 349, 605
NmeAIII GCCGAG 1 cut(s) 722
NmuCI GTSAC 1 cut(s) 536
PcsI WCGNNNNNNNCGW 1 cut(s) 44
Pfl23II CGTACG 1 cut(s) 35
PflFI GACNNNGTC 2 cut(s) 68, 479
PflMI CCANNNNNTGG 1 cut(s) 776
PkrI GCNGC 5 cut(s) 27, 30, 33, 183, 418
PsiI TTATAA 1 cut(s) 618
Psp6I CCWGG 2 cut(s) 156, 401
PspGI CCWGG 2 cut(s) 156, 401
PspLI CGTACG 1 cut(s) 35
PspN4I GGNNCC 3 cut(s) 340, 349, 605
PspPI GGNCC 2 cut(s) 339, 604
PsyI GACNNNGTC 2 cut(s) 68, 479
RsaI GTAC 4 cut(s) 37, 349, 509, 791
RsaNI GTAC 4 cut(s) 36, 348, 508, 790
RseI CAYNNNNRTG 2 cut(s) 111, 687
SaqAI TTAA 3 cut(s) 6, 314, 828
SatI GCNGC 5 cut(s) 26, 29, 32, 182, 417
Sau3AI GATC 4 cut(s) 17, 123, 132, 247
Sau96I GGNCC 2 cut(s) 339, 604
ScrFI CCNGG 2 cut(s) 158, 403
SduI GDGCHC 2 cut(s) 217, 291
SetI ASST 9 cut(s) 72, 93, 123, 243, 388, 399, 585, 724, 789
SfcI CTRYAG 1 cut(s) 511
SinI GGWCC 2 cut(s) 339, 604
SmiMI CAYNNNNRTG 2 cut(s) 111, 687
Sse9I AATT 8 cut(s) 74, 144, 270, 307, 316, 380, 487, 620
SsiI CCGC 5 cut(s) 26, 29, 281, 667, 749
SspMI CTAG 1 cut(s) 228
StyD4I CCNGG 2 cut(s) 156, 401
TaaI ACNGT 1 cut(s) 481
TaiI ACGT 4 cut(s) 72, 123, 388, 724
TaqI TCGA 2 cut(s) 483, 578
TasI AATT 8 cut(s) 74, 144, 270, 307, 316, 380, 487, 620
TatI WGTACW 2 cut(s) 507, 789
TauI GCSGC 2 cut(s) 28, 31
Tru1I TTAA 3 cut(s) 6, 314, 828
Tru9I TTAA 3 cut(s) 6, 314, 828
TscAI CASTG 1 cut(s) 663
TseFI GTSAC 1 cut(s) 536
TseI GCWGC 3 cut(s) 31, 181, 416
Tsp45I GTSAC 1 cut(s) 536
TspDTI ATGAA 5 cut(s) 213, 339, 392, 705, 787
TspGWI ACGGA 1 cut(s) 596
TspRI CASTG 1 cut(s) 663
Tth111I GACNNNGTC 2 cut(s) 68, 479
Van91I CCANNNNNTGG 1 cut(s) 776
VpaK11BI GGWCC 2 cut(s) 339, 604
XapI RAATTY 5 cut(s) 74, 144, 307, 316, 620
XmiI GTMKAC 1 cut(s) 728
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.