Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000544

Physical Location & Seq

Genomic Coordinates Reverse (-)

14536545 .. 14537134

Gene Structure 590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG140400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGTGTGTTGAGGAAAAATGCTCCACTAGCTTTGCCTGTTATATTAACGCGCTTGAAGCGAAAGCAAGAAGAGTGGGCAAGCTTCTACTTCAAGCAACAGGACTCAAAGAGCTTAAGCACCAAAGCCTTGTTGGCGGAGATTAAAGAGATGAGTGAGAAGAAGCGGAAGGAAGATGGTGTTCTTCTTGCTATTGCTGCTGGAAATAGACGACATATTATTCCAAATTTGGAATTCGAGTACCCTGATCCGGACATCCATGAAGATCTGTATCAACTCATCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

95

Amino Acids

11.03

Weight (kDa)

9.22

Isoelectric Point (pI)

64.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04860 FvH4_1g04920 FvH4_1g05010 FvH4_1g07320 FvH4_5g09280 FvH4_5g09280 FvH4_5g09280
rosa_chinensis	RchiOBHm_Chr2g0088841 RchiOBHm_Chr2g0089881 RchiOBHm_Chr2g0089901 RchiOBHm_Chr2g0089911 RchiOBHm_Chr2g0089921 RchiOBHm_Chr2g0090621 RchiOBHm_Chr2g0091091 RchiOBHm_Chr5g0019481 RchiOBHm_Chr5g0019491
rosa_laevigata	RLG00000016078 RLG00000016112 RLG00000016113 RLG00000016126 RLG00000016176 RLG00000016179 RLG00000016217 RLG00000019062 RLG00000032446 RLG00000032447 RLG00000032450
rosa_multiflora	Rmu_sc0000259.1_g000018 Rmu_sc0000779.1_g000022 Rmu_sc0002515.1_g000014 Rmu_sc0002759.1_g000046 Rmu_sc0002986.1_g000072 Rmu_sc0005230.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058560 Rroxscaffold_1G00058570 Rroxscaffold_1G00074340 Rroxscaffold_2G00150150 Rroxscaffold_2G00150970 Rroxscaffold_2G00151500 Rroxscaffold_4G00332590
rosa_rugosa	Rorug01G0127100 Rorug02G0009600 Rorug05G0051100 Rorug07G0229300
rosa_samantha	Rh2AG050300 Rh2AG050400 Rh2AG055000 Rh2AG055100 Rh2AG058600 Rh2AG058900 Rh2AG062100 Rh2BG048900 Rh2BG053100 Rh2BG053900 Rh2BG057400 Rh2BG061100 Rh2CG051100 Rh2CG055100 Rh2CG056100 Rh2CG059300 Rh2CG063200 Rh2DG049400 Rh2DG050300 Rh2DG050400 Rh2DG050500 Rh2DG055300 Rh2DG061700 Rh2DG362200 Rh4AG113200 Rh5AG141500 Rh5AG142000 Rh5AG142100 Rh5BG140400 Rh5BG140500 Rh5CG152300 Rh5CG152400 Rh5CG152500 Rh5CG152600 Rh5DG141100 Rh7DG375200
rosa_wichuraiana	Rw2G004030 Rw2G004800 Rw2G005060 Rw7G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	52
AccIII	TCCGGA	1 cut(s)	250
AciI	CCGC	2 cut(s)	137, 166
AclWI	GGATC	1 cut(s)	242
AcsI	RAATTY	2 cut(s)	226, 233
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflII	CTTAAG	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	58, 94
AluBI	AGCT	3 cut(s)	32, 84, 114
AluI	AGCT	3 cut(s)	32, 84, 114
AlwI	GGATC	1 cut(s)	242
Aor13HI	TCCGGA	1 cut(s)	250
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	2 cut(s)	226, 233
AspLEI	GCGC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	1 cut(s)	170
BfaI	CTAG	1 cut(s)	29
BfrI	CTTAAG	1 cut(s)	115
BglI	GCCNNNNNGGC	1 cut(s)	134
BglII	AGATCT	1 cut(s)	265
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
BsaBI	GATNNNNATC	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse8I	GATNNNNATC	1 cut(s)	270
BseAI	TCCGGA	1 cut(s)	250
BseGI	GGATG	1 cut(s)	255
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	184
Bsh1236I	CGCG	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	250
Bsp13I	TCCGGA	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	247, 265
BspACI	CCGC	2 cut(s)	137, 166
BspEI	TCCGGA	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	52
BspPI	GGATC	1 cut(s)	242
BspTI	CTTAAG	1 cut(s)	115
BssMI	GATC	2 cut(s)	247, 265
Bst6I	CTCTTC	1 cut(s)	66
BstAFI	CTTAAG	1 cut(s)	115
BstC8I	GCNNGC	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	2 cut(s)	250, 268
BstMBI	GATC	2 cut(s)	247, 265
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 58, 134, 197
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	82
CfoI	GCGC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	241
CspCI	CAANNNNNGTGG	4 cut(s)	15, 50, 56, 91
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	4 cut(s)	32, 84, 114, 128
CviKI_1	RGCY	4 cut(s)	32, 84, 114, 128
CviQI	GTAC	1 cut(s)	241
DpnI	GATC	2 cut(s)	249, 267
DpnII	GATC	2 cut(s)	247, 265
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
EciI	GGCGGA	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	233
FaeI	CATG	1 cut(s)	263
FaiI	YATR	3 cut(s)	44, 216, 261
FatI	CATG	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	198
HapII	CCGG	1 cut(s)	251
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	263
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HindIII	AAGCTT	1 cut(s)	82
HinfI	GANTC	1 cut(s)	104
HpaII	CCGG	1 cut(s)	251
Hpy188III	TCNNGA	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	163
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 58, 134, 197
Hsp92II	CATG	1 cut(s)	263
HspAI	GCGC	1 cut(s)	52
Kpn2I	TCCGGA	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	247, 265
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	5 cut(s)	51, 86, 186, 258, 264
Lsp1109I	GCAGC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	29
MalI	GATC	2 cut(s)	249, 267
MboI	GATC	2 cut(s)	247, 265
MboII	GAAGA	5 cut(s)	83, 172, 176, 185, 275
MflI	RGATCY	1 cut(s)	265
MluCI	AATT	2 cut(s)	226, 233
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	250
MseI	TTAA	3 cut(s)	47, 116, 144
MspCI	CTTAAG	1 cut(s)	115
MspI	CCGG	1 cut(s)	251
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	4 cut(s)	29, 58, 134, 197
NdeII	GATC	2 cut(s)	247, 265
NlaIII	CATG	1 cut(s)	263
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SaqAI	TTAA	3 cut(s)	47, 116, 144
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	2 cut(s)	247, 265
SchI	GAGTC	1 cut(s)	98
SetI	ASST	3 cut(s)	34, 86, 116
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	2 cut(s)	226, 233
SsiI	CCGC	2 cut(s)	137, 166
SspMI	CTAG	1 cut(s)	29
TaqI	TCGA	1 cut(s)	237
TasI	AATT	2 cut(s)	226, 233
Tru1I	TTAA	3 cut(s)	47, 116, 144
Tru9I	TTAA	3 cut(s)	47, 116, 144
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	276
Vha464I	CTTAAG	1 cut(s)	115
XapI	RAATTY	2 cut(s)	226, 233
XcmI	CCANNNNNNNNNTGG	1 cut(s)	130
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.