Rorug02G0009600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000544
Physical Location & Seq
Forward (+)
783127 .. 783393
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0009600.1

Sequence Viewer

Length: 267 bp
ATGGCAGGACAGGAACAAGCGAAGGCAGGAGGCCCAGCAGAGGCGATGAAGGGTGCAGCACAGGGGATGCATACAACAGAGGTGCTTCATCAACGGTCGAAAGCGCCTGTCTGCCCCATGAGAATGGCTGTTGGTGGCATTGCTATCGTCGTCACCCTCGGTTACTTAACCTTATACTCCAAGAAGAAGCCCGAGGCATCTGCTCTTGATGTTGCCAAAGTTGCCACAGGAGTCTCTCATCAAGAAAACACTCACCCCGGCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.1

Weight (kDa)

9.46

Isoelectric Point (pI)

32.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 238
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 56
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 2 cut(s) 145, 245
AvaI CYCGRG 1 cut(s) 191
BbvI GCAGC 1 cut(s) 68
BcgI CGANNNNNNTGC 4 cut(s) 127, 161, 182, 216
BcnI CCSGG 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 238
BfoI RGCGCY 1 cut(s) 107
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 258
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 2 cut(s) 57, 206
BpuMI CCSGG 1 cut(s) 258
BsaJI CCNNGG 3 cut(s) 157, 192, 256
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse3DI GCAATG 1 cut(s) 138
BseDI CCNNGG 3 cut(s) 157, 192, 256
BseGI GGATG 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 1 cut(s) 138
BseXI GCAGC 1 cut(s) 68
BseYI CCCAGC 1 cut(s) 34
BsgI GTGCAG 1 cut(s) 75
Bsh1285I CGRYCG 1 cut(s) 98
BshFI GGCC 1 cut(s) 33
BsiEI CGRYCG 1 cut(s) 98
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 238
BsnI GGCC 1 cut(s) 33
BsoBI CYCGRG 1 cut(s) 191
BspANI GGCC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 138
BssECI CCNNGG 3 cut(s) 157, 192, 256
Bst4CI ACNGT 1 cut(s) 96
BstF5I GGATG 1 cut(s) 72
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 238
BstMCI CGRYCG 1 cut(s) 98
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 68
BstXI CCANNNNNNTGG 1 cut(s) 124
BsuRI GGCC 1 cut(s) 33
BtgZI GCGATG 1 cut(s) 59
BtsCI GGATG 1 cut(s) 72
CfoI GCGC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 32
CviAII CATG 1 cut(s) 118
CviJI RGCY 3 cut(s) 33, 128, 190
CviKI_1 RGCY 3 cut(s) 33, 128, 190
Eco88I CYCGRG 1 cut(s) 191
EcoT22I ATGCAT 1 cut(s) 72
FaeI CATG 1 cut(s) 121
FaiI YATR 3 cut(s) 72, 119, 175
FatI CATG 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 57
GlaI GCGC 1 cut(s) 105
GluI GCNGC 1 cut(s) 57
GsaI CCCAGC 1 cut(s) 38
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 1 cut(s) 33
HapII CCGG 1 cut(s) 258
HhaI GCGC 1 cut(s) 106
Hin1II CATG 1 cut(s) 121
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HinfI GANTC 1 cut(s) 231
HpaII CCGG 1 cut(s) 258
HphI GGTGA 2 cut(s) 145, 245
Hpy188III TCNNGA 2 cut(s) 206, 242
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 2 cut(s) 16, 43
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4V TGCA 2 cut(s) 56, 70
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
Hsp92II CATG 1 cut(s) 121
HspAI GCGC 1 cut(s) 104
LpnPI CCDG 5 cut(s) 12, 47, 48, 120, 213
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 2 cut(s) 57, 206
MaeIII GTNAC 2 cut(s) 151, 161
MboII GAAGA 1 cut(s) 196
MlyI GAGTC 1 cut(s) 240
MnlI CCTC 5 cut(s) 23, 34, 73, 167, 187
Mph1103I ATGCAT 1 cut(s) 72
MseI TTAA 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 122
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 221
NciI CCSGG 1 cut(s) 258
NlaIII CATG 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 151
NsiI ATGCAT 1 cut(s) 72
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
PspFI CCCAGC 1 cut(s) 34
PspPI GGNCC 1 cut(s) 32
RseI CAYNNNNRTG 1 cut(s) 122
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 1 cut(s) 57
Sau96I GGNCC 1 cut(s) 32
SchI GAGTC 1 cut(s) 240
ScrFI CCNGG 1 cut(s) 258
SetI ASST 2 cut(s) 84, 173
SfaNI GCATC 2 cut(s) 57, 206
SmiMI CAYNNNNRTG 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 256
TaaI ACNGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 98
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 2 cut(s) 62, 77
Zsp2I ATGCAT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.