Rh2DG049400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000544
Physical Location & Seq
Reverse (-)
3559499 .. 3560372
874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG049400.1

Sequence Viewer

Length: 249 bp
ATGAAAAGAAAGCAAGTTCCAAAATCTTTACCTGAGGGTGACAATGTTTTTGTCAGTGATTACATAGACTTTCATGGTGGAAATTTGTTCTACGAAGTGAAGGACTCAAACCATGGTACACTGTTCAAGATCCCTCTCTGGGATATCCAGAGATTTTCAAGAGATGTGGTTGCCGAAGTGATTTCTAGTCAGCGAGAGGGAAAACCGATTGGTTCCCTCTTGCTAACGAATCTTCAAGCGGCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.26

Weight (kDa)

6.72

Isoelectric Point (pI)

30.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 239
AclWI GGATC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 82
AfaI GTAC 1 cut(s) 118
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 3 cut(s) 127, 159, 236
AlwI GGATC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 82
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
AsuHPI GGTGA 1 cut(s) 50
AxyI CCTNAGG 1 cut(s) 33
BfaI CTAG 1 cut(s) 186
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 112
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse21I CCTNAGG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 139
Bsp143I GATC 1 cut(s) 129
Bsp19I CCATGG 1 cut(s) 112
BspACI CCGC 1 cut(s) 239
BspCNI CTCAG 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 214
BspPI GGATC 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 33
BstDSI CCRYGG 1 cut(s) 112
BstKTI GATC 1 cut(s) 132
BstMBI GATC 1 cut(s) 129
BstX2I RGATCY 1 cut(s) 129
BstYI RGATCY 1 cut(s) 129
Bsu36I CCTNAGG 1 cut(s) 33
BtgI CCRYGG 1 cut(s) 112
BtsIMutI CAGTG 2 cut(s) 61, 119
Csp6I GTAC 1 cut(s) 117
CspCI CAANNNNNGTGG 2 cut(s) 147, 182
CviAII CATG 2 cut(s) 74, 113
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 1 cut(s) 33
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 112
Eco32I GATATC 1 cut(s) 145
Eco81I CCTNAGG 1 cut(s) 33
EcoRV GATATC 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 112
FaeI CATG 2 cut(s) 77, 116
FaiI YATR 3 cut(s) 65, 75, 114
FatI CATG 2 cut(s) 73, 112
Fnu4HI GCNGC 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 1 cut(s) 186
GluI GCNGC 1 cut(s) 240
Hin1II CATG 2 cut(s) 77, 116
HinfI GANTC 2 cut(s) 104, 229
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 3 cut(s) 127, 148, 159
Hpy8I GTNNAC 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 1 cut(s) 123
HpyF3I CTNAG 1 cut(s) 33
Hsp92II CATG 2 cut(s) 77, 116
Kzo9I GATC 1 cut(s) 129
LpnPI CCDG 3 cut(s) 45, 124, 161
MaeI CTAG 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 38
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MboII GAAGA 1 cut(s) 224
MflI RGATCY 1 cut(s) 129
MluCI AATT 1 cut(s) 82
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 4 cut(s) 28, 144, 190, 227
NcoI CCATGG 1 cut(s) 112
NdeII GATC 1 cut(s) 129
NlaIII CATG 2 cut(s) 77, 116
NlaIV GGNNCC 1 cut(s) 214
NmuCI GTSAC 1 cut(s) 38
PfeI GAWTC 1 cut(s) 229
PkrI GCNGC 1 cut(s) 241
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 214
PsuI RGATCY 1 cut(s) 129
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 1 cut(s) 129
SchI GAGTC 1 cut(s) 98
SetI ASST 1 cut(s) 34
Sse9I AATT 1 cut(s) 82
SsiI CCGC 1 cut(s) 239
SspMI CTAG 1 cut(s) 186
StyI CCWWGG 1 cut(s) 112
TaaI ACNGT 1 cut(s) 123
TasI AATT 1 cut(s) 82
TauI GCSGC 1 cut(s) 242
TfiI GAWTC 1 cut(s) 229
TscAI CASTG 2 cut(s) 61, 126
TseFI GTSAC 1 cut(s) 38
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 2 cut(s) 17, 62
TspRI CASTG 2 cut(s) 61, 126
XapI RAATTY 1 cut(s) 82
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.