Rh2DG050300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000544
Physical Location & Seq
Forward (+)
3596847 .. 3597678
832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG050300.1

Sequence Viewer

Length: 687 bp
ATGAGATGGGAGGAGAAGAAGCCAGTCGGGTCCCTGCTTCCGAGTTGCGTGGAAGTCAGGGATCACGTCGCAATTCTCCCCGCAGTTGGCTCTGGTCTTGAGGATAAGGATTACCAGAATAAATTCAGGGAGGCCGTGGAAGCGTTTCTTGGATTTAGTGGAACATATCACCACGATAGAGACAACTTCTTCCGACGGCTTCAAACCCCCCTATCGAGGGAAAGATTCGCTGCTCTTTATTTTCATCGTTTACTGCTCAATGAAGCACAGAGGGCCGATTTTCCGGCTGATACCGTAGAGAACCTCAGGAATAGTGTTGTTCGTTATAGGGGCGTGAATTATAGTTTTGAGGATGGTTACAACATCTGGGAGATGATCGAGTGGAGGGGACAGTACAATTTAGCAGTTACTAGTCAGAAGAACAAGTGGTTTAGAGATGCATACAACTTCCGAACCTACAAGGACACTGCCCTTGATGAGGCGCAGCTGGTCCGAAATACTACTCGACATTTGAATGACAACAGGAATGGTAAGAGTTTTTACTGCACTAAGCCCTACGTTGGTGCGATTGTCTTCGATACAATCCCGGATATCATTCCAAAGCTCTACTCCTTTATGTGGACCTGCAATATAGATATGGATTTTAAAAAAATATTGGTTACACCCCCGGAAGAGGACAGTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

26.86

Weight (kDa)

6.53

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 632
AciI CCGC 1 cut(s) 81
AclWI GGATC 1 cut(s) 69
AcsI RAATTY 1 cut(s) 122
AfaI GTAC 1 cut(s) 395
AfiI CCNNNNNNNGG 7 cut(s) 86, 216, 217, 478, 560, 618, 673
AgsI TTSAA 2 cut(s) 203, 514
AhlI ACTAGT 1 cut(s) 410
AjiI CACGTC 1 cut(s) 67
AjuI GAANNNNNNNTTGG 2 cut(s) 132, 164
AluBI AGCT 2 cut(s) 487, 604
AluI AGCT 2 cut(s) 487, 604
Alw26I GTCTC 1 cut(s) 174
AlwI GGATC 1 cut(s) 69
AoxI GGCC 2 cut(s) 132, 273
ApeKI GCWGC 2 cut(s) 230, 484
ApoI RAATTY 1 cut(s) 122
Asp700I GAANNNNTTC 2 cut(s) 122, 144
AspLEI GCGC 1 cut(s) 484
AspS9I GGNCC 4 cut(s) 30, 273, 490, 621
AsuC2I CCSGG 2 cut(s) 587, 668
AsuHPI GGTGA 1 cut(s) 161
AvaII GGWCC 3 cut(s) 30, 490, 621
AxyI CCTNAGG 1 cut(s) 305
BbsI GAAGAC 1 cut(s) 565
BbvI GCAGC 2 cut(s) 217, 496
BccI CCATC 1 cut(s) 347
BceAI ACGGC 2 cut(s) 119, 212
BcnI CCSGG 2 cut(s) 587, 668
BcoDI GTCTC 1 cut(s) 174
BcuI ACTAGT 1 cut(s) 410
BfaI CTAG 1 cut(s) 411
BfuAI ACCTGC 1 cut(s) 632
BisI GCNGC 2 cut(s) 231, 485
BlsI GCNGC 2 cut(s) 232, 486
Bme1390I CCNGG 2 cut(s) 587, 668
Bme18I GGWCC 3 cut(s) 30, 490, 621
BmgBI CACGTC 1 cut(s) 67
BmgT120I GGNCC 4 cut(s) 30, 273, 490, 621
BmiI GGNNCC 2 cut(s) 31, 32
BmrFI CCNGG 2 cut(s) 587, 668
BmsI GCATC 1 cut(s) 427
BpiI GAAGAC 1 cut(s) 565
BpuEI CTTGAG 1 cut(s) 119
BpuMI CCSGG 2 cut(s) 587, 668
BsaJI CCNNGG 2 cut(s) 135, 666
Bsc4I CCNNNNNNNGG 7 cut(s) 86, 216, 217, 478, 560, 618, 673
Bse1I ACTGG 1 cut(s) 23
Bse21I CCTNAGG 1 cut(s) 305
BseDI CCNNGG 2 cut(s) 135, 666
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 7 cut(s) 86, 216, 217, 478, 560, 618, 673
BseMII CTCAG 1 cut(s) 319
BseNI ACTGG 1 cut(s) 23
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 2 cut(s) 217, 496
BsgI GTGCAG 1 cut(s) 529
BshFI GGCC 2 cut(s) 134, 275
BsiSI CCGG 3 cut(s) 284, 587, 668
BslFI GGGAC 3 cut(s) 16, 402, 666
BslI CCNNNNNNNGG 7 cut(s) 86, 216, 217, 478, 560, 618, 673
BsmAI GTCTC 1 cut(s) 174
BsmFI GGGAC 3 cut(s) 16, 402, 666
BsnI GGCC 2 cut(s) 134, 275
Bsp143I GATC 2 cut(s) 61, 375
BspACI CCGC 1 cut(s) 81
BspANI GGCC 2 cut(s) 134, 275
BspCNI CTCAG 1 cut(s) 318
BspLI GGNNCC 2 cut(s) 31, 32
BspMI ACCTGC 1 cut(s) 632
BspPI GGATC 1 cut(s) 69
BsrI ACTGG 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 135, 666
BssMI GATC 2 cut(s) 61, 375
Bst4CI ACNGT 3 cut(s) 295, 393, 680
Bst6I CTCTTC 1 cut(s) 666
BstDEI CTNAG 2 cut(s) 305, 549
BstDSI CCRYGG 1 cut(s) 135
BstENI CCTNNNNNAGG 1 cut(s) 476
BstF5I GGATG 1 cut(s) 358
BstHHI GCGC 1 cut(s) 484
BstKTI GATC 2 cut(s) 64, 378
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 2 cut(s) 61, 375
BstMWI GCNNNNNNNGC 2 cut(s) 140, 272
BstSCI CCNGG 2 cut(s) 585, 666
BstV1I GCAGC 2 cut(s) 217, 496
BstV2I GAAGAC 1 cut(s) 565
Bsu36I CCTNAGG 1 cut(s) 305
BsuRI GGCC 2 cut(s) 134, 275
BtgI CCRYGG 1 cut(s) 135
BtrI CACGTC 1 cut(s) 67
BtsCI GGATG 1 cut(s) 358
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 1 cut(s) 465
BveI ACCTGC 1 cut(s) 632
CfoI GCGC 1 cut(s) 484
Cfr13I GGNCC 4 cut(s) 30, 273, 490, 621
Csp6I GTAC 1 cut(s) 394
CviJI RGCY 9 cut(s) 22, 90, 134, 199, 275, 287, 487, 553, 604
CviKI_1 RGCY 9 cut(s) 22, 90, 134, 199, 275, 287, 487, 553, 604
CviQI GTAC 1 cut(s) 394
DdeI CTNAG 2 cut(s) 305, 549
DpnI GATC 2 cut(s) 63, 377
DpnII GATC 2 cut(s) 61, 375
DraI TTTAAA 1 cut(s) 646
Eam1104I CTCTTC 1 cut(s) 666
EarI CTCTTC 1 cut(s) 666
Eco32I GATATC 1 cut(s) 592
Eco47I GGWCC 3 cut(s) 30, 490, 621
Eco81I CCTNAGG 1 cut(s) 305
EcoNI CCTNNNNNAGG 1 cut(s) 476
EcoO109I RGGNCCY 1 cut(s) 30
EcoRV GATATC 1 cut(s) 592
EcoT22I ATGCAT 1 cut(s) 442
FaiI YATR 7 cut(s) 166, 327, 342, 442, 617, 632, 638
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FaqI GGGAC 3 cut(s) 16, 402, 666
FauI CCCGC 1 cut(s) 88
Fnu4HI GCNGC 2 cut(s) 231, 485
FokI GGATG 1 cut(s) 365
Fsp4HI GCNGC 2 cut(s) 231, 485
FspBI CTAG 1 cut(s) 411
GlaI GCGC 1 cut(s) 483
GluI GCNGC 2 cut(s) 231, 485
HaeIII GGCC 2 cut(s) 134, 275
HapII CCGG 3 cut(s) 284, 587, 668
HhaI GCGC 1 cut(s) 484
Hin6I GCGC 1 cut(s) 482
HinP1I GCGC 1 cut(s) 482
HinfI GANTC 1 cut(s) 225
HpaII CCGG 3 cut(s) 284, 587, 668
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 2 cut(s) 251, 621
Hpy188I TCNGA 5 cut(s) 42, 194, 417, 452, 494
Hpy188III TCNNGA 2 cut(s) 98, 307
Hpy8I GTNNAC 2 cut(s) 251, 621
Hpy99I CGWCG 2 cut(s) 71, 198
HpyCH4III ACNGT 3 cut(s) 295, 393, 680
HpyCH4IV ACGT 2 cut(s) 66, 558
HpyCH4V TGCA 3 cut(s) 440, 546, 627
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 272
HpyF3I CTNAG 2 cut(s) 305, 549
HpySE526I ACGT 2 cut(s) 66, 558
HspAI GCGC 1 cut(s) 482
KflI GGGWCCC 1 cut(s) 30
Kzo9I GATC 2 cut(s) 61, 375
Lsp1109I GCAGC 2 cut(s) 217, 496
LweI GCATC 1 cut(s) 427
MaeI CTAG 1 cut(s) 411
MaeII ACGT 2 cut(s) 66, 558
MaeIII GTNAC 3 cut(s) 356, 406, 658
MalI GATC 2 cut(s) 63, 377
MboI GATC 2 cut(s) 61, 375
MboII GAAGA 5 cut(s) 28, 181, 430, 565, 683
MluCI AATT 4 cut(s) 72, 122, 337, 397
MmeI TCCRAC 1 cut(s) 217
Mph1103I ATGCAT 1 cut(s) 442
MroXI GAANNNNTTC 2 cut(s) 122, 144
MseI TTAA 1 cut(s) 645
MslI CAYNNNNRTG 1 cut(s) 513
MspA1I CMGCKG 1 cut(s) 487
MspI CCGG 3 cut(s) 284, 587, 668
MspR9I CCNGG 2 cut(s) 587, 668
MwoI GCNNNNNNNGC 2 cut(s) 140, 272
NciI CCSGG 2 cut(s) 587, 668
NdeII GATC 2 cut(s) 61, 375
NlaIV GGNNCC 2 cut(s) 31, 32
NsiI ATGCAT 1 cut(s) 442
PdmI GAANNNNTTC 2 cut(s) 122, 144
PfeI GAWTC 1 cut(s) 225
PfoI TCCNGGA 1 cut(s) 585
PkrI GCNGC 2 cut(s) 232, 486
PpuMI RGGWCCY 1 cut(s) 30
Psp5II RGGWCCY 1 cut(s) 30
PspN4I GGNNCC 2 cut(s) 31, 32
PspPI GGNCC 4 cut(s) 30, 273, 490, 621
PspPPI RGGWCCY 1 cut(s) 30
PvuII CAGCTG 1 cut(s) 487
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
RseI CAYNNNNRTG 1 cut(s) 513
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 2 cut(s) 231, 485
Sau3AI GATC 2 cut(s) 61, 375
Sau96I GGNCC 4 cut(s) 30, 273, 490, 621
ScrFI CCNGG 2 cut(s) 587, 668
SetI ASST 7 cut(s) 69, 306, 458, 489, 561, 606, 626
SfaNI GCATC 1 cut(s) 427
SinI GGWCC 3 cut(s) 30, 490, 621
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SpeI ACTAGT 1 cut(s) 410
Sse9I AATT 4 cut(s) 72, 122, 337, 397
SsiI CCGC 1 cut(s) 81
SspI AATATT 1 cut(s) 654
SspMI CTAG 1 cut(s) 411
StyD4I CCNGG 2 cut(s) 585, 666
TaaI ACNGT 3 cut(s) 295, 393, 680
TaiI ACGT 2 cut(s) 69, 561
TaqI TCGA 4 cut(s) 215, 378, 505, 576
TasI AATT 4 cut(s) 72, 122, 337, 397
TatI WGTACW 1 cut(s) 393
TfiI GAWTC 1 cut(s) 225
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TscAI CASTG 1 cut(s) 472
TseI GCWGC 2 cut(s) 230, 484
TspDTI ATGAA 2 cut(s) 233, 276
TspRI CASTG 1 cut(s) 472
VpaK11BI GGWCC 3 cut(s) 30, 490, 621
XagI CCTNNNNNAGG 1 cut(s) 476
XapI RAATTY 1 cut(s) 122
XmnI GAANNNNTTC 2 cut(s) 122, 144
XspI CTAG 1 cut(s) 411
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.