Rw7G031650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000544
Physical Location & Seq
Forward (+)
45448162 .. 45460528
12367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G031650.1

Sequence Viewer

Length: 822 bp
ATGCGACACCGCCGCCGCCTCTGCTGCACCACCTACACCGGCACACTACCATCGAGTCAAGGCCTTGATTGCCATCCCACCATCCTAGCAACCAAACCATATCAAATCTGGGTTGAAAATCCCAGACTGCAACTCGCCGAGATCGGGGCCAAAGCAAAAGGATCGATCGATCCCATCACCGCCACCCAGGTTGCCAGTCCGCAGGCAGTCCTGCGACCCAATCTTGACCATCCCCTGATGCATAGAAGCCCTGAGGTGCAACGGCGCCCCGAGTTACCCACCATCGATGCAGCACCGTCCAGAAGGCTGAGTGACCCAACCCTCACACTGCTCGGATTTCAGAATTTGTATTTCCATAAACTTTTACAAAGCCGGGAGGAAATCACTGACTTCCCAGTAATGGCGGTTGAAAACCTCCGGCTTAGGAAGTATCTTTACAACGAGACAGAGTGCAATTGGGATGTGGCATATCGATTGTGGGCAGAGGAGAAATACCACAAGGAGATTAATCTTTCTGAAACTTGCCTGAAAAACATTTATGCTTGGAGAGCCTACAATTACAGAATTTACACTGATAATCCCACAGATGAAGCCGAGCTAGTGCGTAATCTCATCATCCACTTCAACCAGTGCAGGATGAAGAATGTCCCCCCACCTGCAGATTTCTATGATAAACATCAAATTGGAGAAGTGGTATTCGACCTCTTTCCTGATATTGGTTCCAGCCTCTTTGATTTCATGTGCGAATGTGGAGTTTATATGGACTTCACGCAGTTCGTACATTTTACAGAGAATAATAAGCCTGAACCTAATTTATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

31.85

Weight (kDa)

6.15

Isoelectric Point (pI)

63.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 664
Acc36I ACCTGC 1 cut(s) 664
AccB1I GGYRCC 1 cut(s) 264
AciI CCGC 6 cut(s) 10, 13, 16, 180, 200, 404
AclWI GGATC 2 cut(s) 164, 169
AcsI RAATTY 2 cut(s) 343, 564
AcyI GRCGYC 1 cut(s) 265
AfaI GTAC 1 cut(s) 780
AfiI CCNNNNNNNGG 3 cut(s) 144, 400, 716
AgsI TTSAA 3 cut(s) 116, 410, 625
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 1 cut(s) 598
AluI AGCT 1 cut(s) 598
Alw26I GTCTC 1 cut(s) 437
AlwI GGATC 2 cut(s) 164, 169
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 2 cut(s) 61, 147
ApeKI GCWGC 2 cut(s) 24, 290
ApoI RAATTY 2 cut(s) 343, 564
AseI ATTAAT 1 cut(s) 507
AspLEI GCGC 1 cut(s) 267
AspS9I GGNCC 1 cut(s) 147
AsuC2I CCSGG 1 cut(s) 374
AsuHPI GGTGA 1 cut(s) 169
AvaI CYCGRG 1 cut(s) 269
AxyI CCTNAGG 1 cut(s) 252
BanI GGYRCC 1 cut(s) 264
BarI GAAGNNNNNNTAC 2 cut(s) 419, 451
BbvI GCAGC 2 cut(s) 11, 302
BccI CCATC 6 cut(s) 58, 81, 89, 182, 237, 290
BceAI ACGGC 1 cut(s) 278
BcgI CGANNNNNNTGC 2 cut(s) 144, 178
BciT130I CCWGG 1 cut(s) 188
BcnI CCSGG 1 cut(s) 374
BcoDI GTCTC 1 cut(s) 437
BfaI CTAG 2 cut(s) 86, 599
BfmI CTRYAG 1 cut(s) 657
BfoI RGCGCY 1 cut(s) 268
BfuAI ACCTGC 1 cut(s) 664
BisI GCNGC 4 cut(s) 13, 16, 25, 291
BlsI GCNGC 4 cut(s) 14, 17, 26, 292
Bme1390I CCNGG 2 cut(s) 188, 374
BmeT110I CYCGRG 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 3 cut(s) 148, 266, 721
BmrFI CCNGG 2 cut(s) 188, 374
BmrI ACTGGG 1 cut(s) 389
BmsI GCATC 2 cut(s) 228, 277
BmuI ACTGGG 1 cut(s) 389
Bpu10I CCTNAGC 1 cut(s) 422
BpuMI CCSGG 1 cut(s) 374
Bsa29I ATCGAT 4 cut(s) 164, 168, 285, 472
BsaBI GATNNNNATC 2 cut(s) 72, 675
BsaHI GRCGYC 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 186
BsaXI ACNNNNNCTCC 2 cut(s) 678, 708
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 400, 716
Bse118I RCCGGY 1 cut(s) 38
Bse1I ACTGG 3 cut(s) 195, 395, 628
Bse21I CCTNAGG 1 cut(s) 252
Bse8I GATNNNNATC 2 cut(s) 72, 675
BseBI CCWGG 1 cut(s) 188
BseCI ATCGAT 4 cut(s) 164, 168, 285, 472
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 6 cut(s) 73, 81, 229, 466, 615, 642
BseJI GATNNNNATC 2 cut(s) 72, 675
BseLI CCNNNNNNNGG 3 cut(s) 144, 400, 716
BseMII CTCAG 2 cut(s) 243, 299
BseNI ACTGG 3 cut(s) 195, 395, 628
BseRI GAGGAG 1 cut(s) 500
BseXI GCAGC 2 cut(s) 11, 302
BsgI GTGCAG 2 cut(s) 10, 652
Bsh1285I CGRYCG 1 cut(s) 168
BshFI GGCC 2 cut(s) 63, 149
BshNI GGYRCC 1 cut(s) 264
BshVI ATCGAT 4 cut(s) 164, 168, 285, 472
BsiEI CGRYCG 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 3 cut(s) 39, 373, 418
BslFI GGGAC 1 cut(s) 632
BslI CCNNNNNNNGG 3 cut(s) 144, 400, 716
BsmAI GTCTC 1 cut(s) 437
BsmFI GGGAC 1 cut(s) 632
BsnI GGCC 2 cut(s) 63, 149
BsoBI CYCGRG 1 cut(s) 269
Bsp143I GATC 4 cut(s) 141, 161, 165, 169
BspACI CCGC 6 cut(s) 10, 13, 16, 180, 200, 404
BspANI GGCC 2 cut(s) 63, 149
BspCNI CTCAG 2 cut(s) 244, 300
BspDI ATCGAT 4 cut(s) 164, 168, 285, 472
BspLI GGNNCC 3 cut(s) 148, 266, 721
BspMAI CTGCAG 1 cut(s) 661
BspMI ACCTGC 1 cut(s) 664
BspPI GGATC 2 cut(s) 164, 169
BspT107I GGYRCC 1 cut(s) 264
BsrFI RCCGGY 1 cut(s) 38
BsrI ACTGG 3 cut(s) 195, 395, 628
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 4 cut(s) 141, 161, 165, 169
BssNI GRCGYC 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 297
BstACI GRCGYC 1 cut(s) 265
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 3 cut(s) 252, 308, 422
BstF5I GGATG 6 cut(s) 73, 81, 229, 466, 615, 642
BstH2I RGCGCY 1 cut(s) 268
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 4 cut(s) 144, 164, 168, 172
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 4 cut(s) 141, 161, 165, 169
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 4 cut(s) 21, 24, 69, 548
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 2 cut(s) 186, 372
BstSFI CTRYAG 1 cut(s) 657
BstV1I GCAGC 2 cut(s) 11, 302
Bsu15I ATCGAT 4 cut(s) 164, 168, 285, 472
Bsu36I CCTNAGG 1 cut(s) 252
BsuRI GGCC 2 cut(s) 63, 149
BsuTUI ATCGAT 4 cut(s) 164, 168, 285, 472
BtsCI GGATG 6 cut(s) 73, 81, 229, 466, 615, 642
BtsI GCAGTG 1 cut(s) 326
BtsIMutI CAGTG 4 cut(s) 326, 384, 570, 635
BveI ACCTGC 1 cut(s) 664
Cac8I GCNNGC 1 cut(s) 204
CfoI GCGC 1 cut(s) 267
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 147
ClaI ATCGAT 4 cut(s) 164, 168, 285, 472
Csp6I GTAC 1 cut(s) 779
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 1 cut(s) 739
CviQI GTAC 1 cut(s) 779
DdeI CTNAG 3 cut(s) 252, 308, 422
DinI GGCGCC 1 cut(s) 266
DpnI GATC 4 cut(s) 143, 163, 167, 171
DpnII GATC 4 cut(s) 141, 161, 165, 169
Eco147I AGGCCT 1 cut(s) 63
Eco81I CCTNAGG 1 cut(s) 252
Eco88I CYCGRG 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 186
EcoT22I ATGCAT 1 cut(s) 243
EgeI GGCGCC 1 cut(s) 266
EheI GGCGCC 1 cut(s) 266
FaeI CATG 1 cut(s) 742
FaiI YATR 9 cut(s) 100, 243, 357, 469, 540, 669, 740, 759, 761
FaqI GGGAC 1 cut(s) 632
FatI CATG 1 cut(s) 738
Fnu4HI GCNGC 4 cut(s) 13, 16, 25, 291
FokI GGATG 6 cut(s) 60, 68, 216, 473, 602, 649
Fsp4HI GCNGC 4 cut(s) 13, 16, 25, 291
FspBI CTAG 2 cut(s) 86, 599
GlaI GCGC 1 cut(s) 266
GluI GCNGC 4 cut(s) 13, 16, 25, 291
HaeII RGCGCY 1 cut(s) 268
HaeIII GGCC 2 cut(s) 63, 149
HapII CCGG 3 cut(s) 39, 373, 418
HhaI GCGC 1 cut(s) 267
Hin1I GRCGYC 1 cut(s) 265
Hin1II CATG 1 cut(s) 742
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HinfI GANTC 1 cut(s) 55
HpaII CCGG 3 cut(s) 39, 373, 418
HphI GGTGA 1 cut(s) 169
Hpy188I TCNGA 3 cut(s) 335, 342, 517
Hpy188III TCNNGA 3 cut(s) 224, 300, 710
HpyAV CCTTC 1 cut(s) 297
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4V TGCA 8 cut(s) 27, 130, 241, 259, 290, 453, 633, 659
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 24, 69, 548
HpyF3I CTNAG 3 cut(s) 252, 308, 422
Hsp92I GRCGYC 1 cut(s) 265
Hsp92II CATG 1 cut(s) 742
HspAI GCGC 1 cut(s) 265
KasI GGCGCC 1 cut(s) 264
Kzo9I GATC 4 cut(s) 141, 161, 165, 169
Lsp1109I GCAGC 2 cut(s) 11, 302
LweI GCATC 2 cut(s) 228, 277
MaeI CTAG 2 cut(s) 86, 599
MaeIII GTNAC 2 cut(s) 273, 311
MalI GATC 4 cut(s) 143, 163, 167, 171
MboI GATC 4 cut(s) 141, 161, 165, 169
MboII GAAGA 1 cut(s) 652
MfeI CAATTG 1 cut(s) 454
MluCI AATT 6 cut(s) 343, 454, 556, 564, 681, 811
Mly113I GGCGCC 1 cut(s) 265
MlyI GAGTC 1 cut(s) 64
MnlI CCTC 8 cut(s) 29, 247, 332, 370, 425, 478, 713, 737
Mph1103I ATGCAT 1 cut(s) 243
MseI TTAA 1 cut(s) 507
MspI CCGG 3 cut(s) 39, 373, 418
MspR9I CCNGG 2 cut(s) 188, 374
MunI CAATTG 1 cut(s) 454
MvaI CCWGG 1 cut(s) 188
MwoI GCNNNNNNNGC 4 cut(s) 21, 24, 69, 548
NarI GGCGCC 1 cut(s) 265
NciI CCSGG 1 cut(s) 374
NdeII GATC 4 cut(s) 141, 161, 165, 169
NlaIII CATG 1 cut(s) 742
NlaIV GGNNCC 3 cut(s) 148, 266, 721
NmeAIII GCCGAG 2 cut(s) 163, 619
NmuCI GTSAC 1 cut(s) 311
NsiI ATGCAT 1 cut(s) 243
PaqCI CACCTGC 1 cut(s) 664
PceI AGGCCT 1 cut(s) 63
PkrI GCNGC 4 cut(s) 14, 17, 26, 292
Ple19I CGATCG 1 cut(s) 168
PleI GAGTC 1 cut(s) 63
PluTI GGCGCC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 63
PshBI ATTAAT 1 cut(s) 507
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 3 cut(s) 148, 266, 721
PspPI GGNCC 1 cut(s) 147
PstI CTGCAG 1 cut(s) 661
PvuI CGATCG 1 cut(s) 168
RsaI GTAC 1 cut(s) 780
RsaNI GTAC 1 cut(s) 779
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 4 cut(s) 13, 16, 25, 291
Sau3AI GATC 4 cut(s) 141, 161, 165, 169
Sau96I GGNCC 1 cut(s) 147
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 188, 374
SetI ASST 8 cut(s) 35, 192, 258, 417, 600, 658, 705, 811
SfaNI GCATC 2 cut(s) 228, 277
SfcI CTRYAG 1 cut(s) 657
SfoI GGCGCC 1 cut(s) 266
Sse9I AATT 6 cut(s) 343, 454, 556, 564, 681, 811
SseBI AGGCCT 1 cut(s) 63
SsiI CCGC 6 cut(s) 10, 13, 16, 180, 200, 404
SspDI GGCGCC 1 cut(s) 264
SspMI CTAG 2 cut(s) 86, 599
StuI AGGCCT 1 cut(s) 63
StyD4I CCNGG 2 cut(s) 186, 372
TaaI ACNGT 1 cut(s) 297
TaqI TCGA 6 cut(s) 53, 164, 168, 285, 472, 699
TasI AATT 6 cut(s) 343, 454, 556, 564, 681, 811
TauI GCSGC 2 cut(s) 15, 18
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 4 cut(s) 333, 391, 577, 635
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 2 cut(s) 24, 290
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 3 cut(s) 603, 653, 727
TspRI CASTG 4 cut(s) 333, 391, 577, 635
VspI ATTAAT 1 cut(s) 507
XapI RAATTY 2 cut(s) 343, 564
XcmI CCANNNNNNNNNTGG 1 cut(s) 105
XspI CTAG 2 cut(s) 86, 599
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.