Rroxscaffold_2G00150150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000544
Physical Location & Seq
Forward (+)
87602262 .. 87609033
6772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00150150.1

Sequence Viewer

Length: 468 bp
ATGCGCAACCGTTTAGTGACTTATAATGGAACTGTAAAGCGCTGCATGGGAAGCAGCAAGCAATCTATTTACACTCCATACGAGCTTGGCGCTCTGGTGGATGAGCTATTCCCCAACCTCAGCTCTAGATTGTTCGAGTTTCTATGGAAGCAACGCATCAACCTGGACTTCAAGAGGTCCAGGAACACTTTCAATGATCACTATTTAAAAGCACAAAACAAAAAGAAGCTGAATTGGAGACATGGAACTGATGGAAGGGTATGCAGCAGTAGTGTGATTAAACTTACTTCATCTGGGTTTGCAGAAGATCAACTAGATTGGGTCAAGCTACCTGCAAAGACCTACGCAGTCGCTTTGGTTTCTTACACCACGGAATTCTTGAAGGAAGGAGGAAATGATGCAGAAGAATGGAAATGCACTAAAAAGTCAACCCTAGAACATTTTCTTACTCCGGCTAGGAGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.99

Weight (kDa)

9.71

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 24
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 1 cut(s) 340
AcsI RAATTY 1 cut(s) 374
AfeI AGCGCT 1 cut(s) 41
AgsI TTSAA 3 cut(s) 172, 193, 382
AjnI CCWGG 2 cut(s) 162, 179
AluBI AGCT 5 cut(s) 85, 106, 123, 229, 328
AluI AGCT 5 cut(s) 85, 106, 123, 229, 328
Alw26I GTCTC 1 cut(s) 232
Aor51HI AGCGCT 1 cut(s) 41
ApeKI GCWGC 3 cut(s) 42, 54, 264
ApoI RAATTY 1 cut(s) 374
Asp700I GAANNNNTTC 2 cut(s) 188, 441
AspLEI GCGC 3 cut(s) 6, 42, 92
AspS9I GGNCC 1 cut(s) 177
AvaII GGWCC 1 cut(s) 177
BbvCI CCTCAGC 1 cut(s) 119
BbvI GCAGC 3 cut(s) 29, 66, 276
BccI CCATC 1 cut(s) 245
BciT130I CCWGG 2 cut(s) 164, 181
BclI TGATCA 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 4 cut(s) 126, 314, 434, 456
BfoI RGCGCY 2 cut(s) 43, 93
BfuAI ACCTGC 1 cut(s) 340
BisI GCNGC 3 cut(s) 43, 55, 265
BlsI GCNGC 3 cut(s) 44, 56, 266
Bme1390I CCNGG 2 cut(s) 164, 181
Bme18I GGWCC 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 177
BmrFI CCNGG 2 cut(s) 164, 181
BmsI GCATC 2 cut(s) 165, 388
Bpu10I CCTNAGC 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 369
BseBI CCWGG 2 cut(s) 164, 181
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 133
BseXI GCAGC 3 cut(s) 29, 66, 276
BsiSI CCGG 1 cut(s) 452
BsmAI GTCTC 1 cut(s) 232
Bsp143I GATC 2 cut(s) 196, 307
BspCNI CTCAG 1 cut(s) 132
BspMI ACCTGC 1 cut(s) 340
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 2 cut(s) 196, 307
Bst2UI CCWGG 2 cut(s) 164, 181
Bst4CI ACNGT 2 cut(s) 11, 34
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 119
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 1 cut(s) 106
BstH2I RGCGCY 2 cut(s) 43, 93
BstHHI GCGC 3 cut(s) 6, 42, 92
BstKTI GATC 2 cut(s) 199, 310
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 2 cut(s) 196, 307
BstMWI GCNNNNNNNGC 1 cut(s) 51
BstNI CCWGG 2 cut(s) 164, 181
BstSCI CCNGG 2 cut(s) 162, 179
BstV1I GCAGC 3 cut(s) 29, 66, 276
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 1 cut(s) 106
BveI ACCTGC 1 cut(s) 340
Cac8I GCNNGC 1 cut(s) 59
CfoI GCGC 3 cut(s) 6, 42, 92
Cfr13I GGNCC 1 cut(s) 177
CviAII CATG 2 cut(s) 46, 242
CviJI RGCY 6 cut(s) 85, 106, 123, 229, 328, 455
CviKI_1 RGCY 6 cut(s) 85, 106, 123, 229, 328, 455
DdeI CTNAG 1 cut(s) 119
DpnI GATC 2 cut(s) 198, 309
DpnII GATC 2 cut(s) 196, 307
DraI TTTAAA 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 177
Eco47III AGCGCT 1 cut(s) 41
EcoRI GAATTC 1 cut(s) 374
EcoRII CCWGG 2 cut(s) 162, 179
FaeI CATG 2 cut(s) 49, 245
FaiI YATR 6 cut(s) 24, 47, 79, 145, 243, 262
FatI CATG 2 cut(s) 45, 241
FbaI TGATCA 1 cut(s) 196
Fnu4HI GCNGC 3 cut(s) 43, 55, 265
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 3 cut(s) 43, 55, 265
FspBI CTAG 4 cut(s) 126, 314, 434, 456
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 3 cut(s) 5, 41, 91
GluI GCNGC 3 cut(s) 43, 55, 265
HaeII RGCGCY 2 cut(s) 43, 93
HapII CCGG 1 cut(s) 452
HhaI GCGC 3 cut(s) 6, 42, 92
Hin1II CATG 2 cut(s) 49, 245
Hin6I GCGC 3 cut(s) 4, 40, 90
HinP1I GCGC 3 cut(s) 4, 40, 90
HincII GTYRAC 1 cut(s) 429
HindII GTYRAC 1 cut(s) 429
HpaII CCGG 1 cut(s) 452
Hpy166II GTNNAC 1 cut(s) 429
Hpy188III TCNNGA 3 cut(s) 126, 172, 379
Hpy8I GTNNAC 1 cut(s) 429
HpyAV CCTTC 3 cut(s) 249, 376, 380
HpyCH4III ACNGT 2 cut(s) 11, 34
HpyCH4V TGCA 6 cut(s) 45, 264, 302, 335, 401, 417
HpyF10VI GCNNNNNNNGC 1 cut(s) 51
HpyF3I CTNAG 1 cut(s) 119
Hsp92II CATG 2 cut(s) 49, 245
HspAI GCGC 3 cut(s) 4, 40, 90
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 2 cut(s) 196, 307
LpnPI CCDG 7 cut(s) 80, 149, 166, 176, 193, 279, 345
Lsp1109I GCAGC 3 cut(s) 29, 66, 276
LweI GCATC 2 cut(s) 165, 388
MaeI CTAG 4 cut(s) 126, 314, 434, 456
MaeIII GTNAC 1 cut(s) 16
MalI GATC 2 cut(s) 198, 309
MboI GATC 2 cut(s) 196, 307
MboII GAAGA 2 cut(s) 317, 416
MluCI AATT 2 cut(s) 232, 374
MnlI CCTC 3 cut(s) 128, 168, 383
MroXI GAANNNNTTC 2 cut(s) 188, 441
MseI TTAA 2 cut(s) 206, 279
MspI CCGG 1 cut(s) 452
MspR9I CCNGG 2 cut(s) 164, 181
MvaI CCWGG 2 cut(s) 164, 181
MwoI GCNNNNNNNGC 1 cut(s) 51
NdeII GATC 2 cut(s) 196, 307
NlaIII CATG 2 cut(s) 49, 245
NmuCI GTSAC 1 cut(s) 16
NsbI TGCGCA 1 cut(s) 5
PdmI GAANNNNTTC 2 cut(s) 188, 441
PfoI TCCNGGA 1 cut(s) 179
PkrI GCNGC 3 cut(s) 44, 56, 266
PsiI TTATAA 1 cut(s) 24
Psp6I CCWGG 2 cut(s) 162, 179
PspGI CCWGG 2 cut(s) 162, 179
PspPI GGNCC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 206, 279
SatI GCNGC 3 cut(s) 43, 55, 265
Sau3AI GATC 2 cut(s) 196, 307
Sau96I GGNCC 1 cut(s) 177
ScrFI CCNGG 2 cut(s) 164, 181
SfaNI GCATC 2 cut(s) 165, 388
SinI GGWCC 1 cut(s) 177
Sse9I AATT 2 cut(s) 232, 374
SspMI CTAG 4 cut(s) 126, 314, 434, 456
StyD4I CCNGG 2 cut(s) 162, 179
TaaI ACNGT 2 cut(s) 11, 34
TaqI TCGA 1 cut(s) 135
TasI AATT 2 cut(s) 232, 374
Tru1I TTAA 2 cut(s) 206, 279
Tru9I TTAA 2 cut(s) 206, 279
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 3 cut(s) 42, 54, 264
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 1 cut(s) 279
TspGWI ACGGA 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 177
XapI RAATTY 1 cut(s) 374
XbaI TCTAGA 1 cut(s) 125
XmnI GAANNNNTTC 2 cut(s) 188, 441
XspI CTAG 4 cut(s) 126, 314, 434, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.