Rh2CG063200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000544
Physical Location & Seq
Reverse (-)
5178220 .. 5193758
15539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG063200.1

Sequence Viewer

Length: 381 bp
ATGCGCAACCGTTTAGTGACTTATAATGGAACTGTACAGCGCTGGGAAGCAGCTTACAATGAATGGGAGAAAACAGTCTATCCGGAGAAAATAGATTTAGAACAGGCTTGCAGTAAAGATCCCTGGGCTTTAAAAGTTTTCAAACATACGACAACATATAATAATACTCCAGCTAGCCGAGTGAAGCTTGCCCGCAACATAATCATACATTTGAACGACCATCGGATTGGCAAGAAGCAATCTATTTACACTTCATACGAGCTTGGCGCTCTGGTGGATGAGCTATTCCCCAACCTCAGCTCTAGATTATTCGAGTTTCTATGGAAGCAACGCATCAACCTGGACTTCAAGAGGTCCAGGAACACTTTCAAATCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

15.03

Weight (kDa)

9.75

Isoelectric Point (pI)

35.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 24
Acc16I TGCGCA 1 cut(s) 5
AccIII TCCGGA 1 cut(s) 82
AciI CCGC 1 cut(s) 193
AclWI GGATC 1 cut(s) 113
AfaI GTAC 1 cut(s) 36
AfeI AGCGCT 1 cut(s) 41
AgsI TTSAA 4 cut(s) 142, 214, 349, 370
AjnI CCWGG 3 cut(s) 122, 339, 356
AluBI AGCT 6 cut(s) 53, 173, 187, 262, 283, 300
AluI AGCT 6 cut(s) 53, 173, 187, 262, 283, 300
AlwI GGATC 1 cut(s) 113
Aor13HI TCCGGA 1 cut(s) 82
Aor51HI AGCGCT 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 365
AspLEI GCGC 3 cut(s) 6, 42, 269
AspS9I GGNCC 1 cut(s) 354
AsuNHI GCTAGC 1 cut(s) 173
AvaII GGWCC 1 cut(s) 354
BbvCI CCTCAGC 1 cut(s) 296
BbvI GCAGC 1 cut(s) 62
BccI CCATC 1 cut(s) 228
BciT130I CCWGG 3 cut(s) 124, 341, 358
BfaI CTAG 2 cut(s) 174, 303
BfoI RGCGCY 2 cut(s) 43, 270
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 3 cut(s) 124, 341, 358
Bme18I GGWCC 1 cut(s) 354
BmgT120I GGNCC 1 cut(s) 354
BmrFI CCNGG 3 cut(s) 124, 341, 358
BmsI GCATC 1 cut(s) 342
BmtI GCTAGC 1 cut(s) 177
BpmI CTGGAG 1 cut(s) 153
Bpu10I CCTNAGC 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 122, 123
BsaWI WCCGGW 1 cut(s) 82
BseAI TCCGGA 1 cut(s) 82
BseBI CCWGG 3 cut(s) 124, 341, 358
BseDI CCNNGG 2 cut(s) 122, 123
BseGI GGATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 310
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 83
Bsp13I TCCGGA 1 cut(s) 82
Bsp1407I TGTACA 1 cut(s) 34
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 1 cut(s) 193
BspCNI CTCAG 1 cut(s) 309
BspEI TCCGGA 1 cut(s) 82
BspOI GCTAGC 1 cut(s) 177
BspPI GGATC 1 cut(s) 113
BsrGI TGTACA 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 122, 123
BssMI GATC 1 cut(s) 118
Bst2UI CCWGG 3 cut(s) 124, 341, 358
Bst4CI ACNGT 3 cut(s) 11, 34, 76
BstAUI TGTACA 1 cut(s) 34
BstC8I GCNNGC 4 cut(s) 109, 175, 189, 193
BstDEI CTNAG 1 cut(s) 296
BstF5I GGATG 1 cut(s) 283
BstH2I RGCGCY 2 cut(s) 43, 270
BstHHI GCGC 3 cut(s) 6, 42, 269
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstNI CCWGG 3 cut(s) 124, 341, 358
BstSCI CCNGG 3 cut(s) 122, 339, 356
BstV1I GCAGC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 118
BstXI CCANNNNNNTGG 1 cut(s) 227
BstYI RGATCY 1 cut(s) 118
BtsCI GGATG 1 cut(s) 283
Cac8I GCNNGC 4 cut(s) 109, 175, 189, 193
CfoI GCGC 3 cut(s) 6, 42, 269
Cfr13I GGNCC 1 cut(s) 354
Csp6I GTAC 1 cut(s) 35
CviJI RGCY 9 cut(s) 53, 107, 128, 173, 177, 187, 262, 283, 300
CviKI_1 RGCY 9 cut(s) 53, 107, 128, 173, 177, 187, 262, 283, 300
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 1 cut(s) 296
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
DraI TTTAAA 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 354
Eco47III AGCGCT 1 cut(s) 41
EcoRII CCWGG 3 cut(s) 122, 339, 356
FauI CCCGC 1 cut(s) 200
FauNDI CATATG 1 cut(s) 377
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 2 cut(s) 174, 303
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 3 cut(s) 5, 41, 268
GluI GCNGC 1 cut(s) 51
GsaI CCCAGC 1 cut(s) 46
GsuI CTGGAG 1 cut(s) 153
HaeII RGCGCY 2 cut(s) 43, 270
HapII CCGG 1 cut(s) 83
HhaI GCGC 3 cut(s) 6, 42, 269
Hin6I GCGC 3 cut(s) 4, 40, 267
HinP1I GCGC 3 cut(s) 4, 40, 267
HindIII AAGCTT 1 cut(s) 185
HpaII CCGG 1 cut(s) 83
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 3 cut(s) 83, 303, 349
HpyCH4III ACNGT 3 cut(s) 11, 34, 76
HpyCH4V TGCA 1 cut(s) 111
HpyF3I CTNAG 1 cut(s) 296
HspAI GCGC 3 cut(s) 4, 40, 267
Kpn2I TCCGGA 1 cut(s) 82
Kzo9I GATC 1 cut(s) 118
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 342
MaeI CTAG 2 cut(s) 174, 303
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MflI RGATCY 1 cut(s) 118
MnlI CCTC 2 cut(s) 305, 345
MroI TCCGGA 1 cut(s) 82
MroXI GAANNNNTTC 1 cut(s) 365
MseI TTAA 1 cut(s) 131
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 3 cut(s) 124, 341, 358
MvaI CCWGG 3 cut(s) 124, 341, 358
NdeI CATATG 1 cut(s) 377
NdeII GATC 1 cut(s) 118
NheI GCTAGC 1 cut(s) 173
NmeAIII GCCGAG 1 cut(s) 203
NmuCI GTSAC 1 cut(s) 16
NsbI TGCGCA 1 cut(s) 5
PasI CCCWGGG 1 cut(s) 123
PdmI GAANNNNTTC 1 cut(s) 365
PfoI TCCNGGA 1 cut(s) 356
PkrI GCNGC 1 cut(s) 52
PsiI TTATAA 1 cut(s) 24
Psp6I CCWGG 3 cut(s) 122, 339, 356
PspFI CCCAGC 1 cut(s) 42
PspGI CCWGG 3 cut(s) 122, 339, 356
PspPI GGNCC 1 cut(s) 354
PsuI RGATCY 1 cut(s) 118
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 1 cut(s) 354
ScrFI CCNGG 3 cut(s) 124, 341, 358
SetI ASST 9 cut(s) 55, 175, 189, 264, 285, 297, 302, 342, 356
SfaNI GCATC 1 cut(s) 342
SinI GGWCC 1 cut(s) 354
SsiI CCGC 1 cut(s) 193
SspMI CTAG 2 cut(s) 174, 303
StyD4I CCNGG 3 cut(s) 122, 339, 356
TaaI ACNGT 3 cut(s) 11, 34, 76
TaqI TCGA 1 cut(s) 312
TatI WGTACW 1 cut(s) 34
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 75, 243
VpaK11BI GGWCC 1 cut(s) 354
XbaI TCTAGA 1 cut(s) 302
XmnI GAANNNNTTC 1 cut(s) 365
XspI CTAG 2 cut(s) 174, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.