Rroxscaffold_2G00150970

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
88319535 .. 88320439
905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00150970.1

Sequence Viewer

Length: 597 bp
ATGGGGAATTTGGCGAGGATTGGCAGTGGTCTTTGTATAATTGATCCTATAAGAGTGTTTGATCAGAATAATAAGCTCGGATTTCAAAATTTGTATTTCCATAAACTTTTACAAAGCCGGGAGGAAATCAATGACTTCCCAGTAGTGGCGGTTGAAAACCTCCGGCTTAGGAAGTATGATTACAATGACACAGAGTGCAATTGGGATGTAGCGTATCGATTGTGGGCAGAGGAGAAATACCACAGGGAGATTAATCTTTTTGAAACTTGCATAAAAAACATTTATGTGTGGAGAGCCTACAATTACAGAATTTACGCTGATAATCCCACAGATGAAGCCGAGCTAGTGCGTAATCTCATCATCCACTTCAACCAGTGCAGGATGAAGGATGTTCCCCCACCTGCAGATTTCTTTGATAAAAATCAAATTGGAGAAGTGGTATTCGACCTCTTTCCTGATATTGGTTCCAGCCTCTTTGATTTCATGTACGAACGTGGAGTTTATATGGACTTCACAGCACTTCGTACATTTTACAGGTGCCACTTTGCGTTTTTGATTAGTTTCCGTGAGGCAATATTTCATGATCCTGTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

23.69

Weight (kDa)

5.24

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 409
Acc36I ACCTGC 1 cut(s) 409
AccB1I GGYRCC 1 cut(s) 537
AciI CCGC 1 cut(s) 149
AclWI GGATC 2 cut(s) 38, 578
AcsI RAATTY 3 cut(s) 7, 88, 309
AdeI CACNNNGTG 1 cut(s) 195
AfaI GTAC 2 cut(s) 488, 526
AfiI CCNNNNNNNGG 2 cut(s) 145, 461
AgsI TTSAA 4 cut(s) 86, 155, 263, 370
AluBI AGCT 2 cut(s) 76, 343
AluI AGCT 2 cut(s) 76, 343
AlwI GGATC 2 cut(s) 38, 578
ApoI RAATTY 3 cut(s) 7, 88, 309
AseI ATTAAT 1 cut(s) 252
AsuC2I CCSGG 1 cut(s) 119
BanI GGYRCC 1 cut(s) 537
BarI GAAGNNNNNNTAC 2 cut(s) 164, 196
BclI TGATCA 1 cut(s) 61
BcnI CCSGG 1 cut(s) 119
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 1 cut(s) 402
BfuAI ACCTGC 1 cut(s) 409
Bme1390I CCNGG 1 cut(s) 119
BmiI GGNNCC 2 cut(s) 466, 539
BmrFI CCNGG 1 cut(s) 119
BmrI ACTGGG 1 cut(s) 134
BmuI ACTGGG 1 cut(s) 134
Bpu10I CCTNAGC 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 119
Bsa29I ATCGAT 1 cut(s) 217
BsaBI GATNNNNATC 1 cut(s) 420
BsaXI ACNNNNNCTCC 2 cut(s) 423, 453
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 461
Bse1I ACTGG 2 cut(s) 140, 373
Bse8I GATNNNNATC 1 cut(s) 420
BseCI ATCGAT 1 cut(s) 217
BseGI GGATG 4 cut(s) 211, 360, 387, 394
BseJI GATNNNNATC 1 cut(s) 420
BseLI CCNNNNNNNGG 2 cut(s) 145, 461
BseNI ACTGG 2 cut(s) 140, 373
BseRI GAGGAG 1 cut(s) 245
BsgI GTGCAG 1 cut(s) 397
BshNI GGYRCC 1 cut(s) 537
BshVI ATCGAT 1 cut(s) 217
BsiSI CCGG 2 cut(s) 118, 163
BslI CCNNNNNNNGG 2 cut(s) 145, 461
Bsp143I GATC 3 cut(s) 43, 61, 583
BspACI CCGC 1 cut(s) 149
BspDI ATCGAT 1 cut(s) 217
BspHI TCATGA 1 cut(s) 580
BspLI GGNNCC 2 cut(s) 466, 539
BspMAI CTGCAG 1 cut(s) 406
BspMI ACCTGC 1 cut(s) 409
BspPI GGATC 2 cut(s) 38, 578
BspT107I GGYRCC 1 cut(s) 537
BsrI ACTGG 2 cut(s) 140, 373
BssMI GATC 3 cut(s) 43, 61, 583
BstDEI CTNAG 2 cut(s) 167, 594
BstF5I GGATG 4 cut(s) 211, 360, 387, 394
BstKTI GATC 3 cut(s) 46, 64, 586
BstMBI GATC 3 cut(s) 43, 61, 583
BstSCI CCNGG 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 402
Bsu15I ATCGAT 1 cut(s) 217
BsuTUI ATCGAT 1 cut(s) 217
BtsCI GGATG 4 cut(s) 211, 360, 387, 394
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 2 cut(s) 31, 380
BveI ACCTGC 1 cut(s) 409
CciI TCATGA 1 cut(s) 580
ClaI ATCGAT 1 cut(s) 217
Csp6I GTAC 2 cut(s) 487, 525
CviAII CATG 2 cut(s) 484, 581
CviJI RGCY 7 cut(s) 76, 117, 166, 296, 338, 343, 471
CviKI_1 RGCY 7 cut(s) 76, 117, 166, 296, 338, 343, 471
CviQI GTAC 2 cut(s) 487, 525
DdeI CTNAG 2 cut(s) 167, 594
DpnI GATC 3 cut(s) 45, 63, 585
DpnII GATC 3 cut(s) 43, 61, 583
DraIII CACNNNGTG 1 cut(s) 195
FaeI CATG 2 cut(s) 487, 584
FatI CATG 2 cut(s) 483, 580
FbaI TGATCA 1 cut(s) 61
FokI GGATG 4 cut(s) 218, 347, 394, 401
FspBI CTAG 1 cut(s) 344
HapII CCGG 2 cut(s) 118, 163
Hin1II CATG 2 cut(s) 487, 584
HpaII CCGG 2 cut(s) 118, 163
Hpy188I TCNGA 2 cut(s) 66, 80
Hpy188III TCNNGA 2 cut(s) 455, 581
HpyAV CCTTC 1 cut(s) 379
HpyCH4IV ACGT 1 cut(s) 493
HpyCH4V TGCA 4 cut(s) 198, 270, 378, 404
HpyF3I CTNAG 2 cut(s) 167, 594
HpySE526I ACGT 1 cut(s) 493
Hsp92II CATG 2 cut(s) 487, 584
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 3 cut(s) 43, 61, 583
MaeI CTAG 1 cut(s) 344
MaeII ACGT 1 cut(s) 493
MalI GATC 3 cut(s) 45, 63, 585
MboI GATC 3 cut(s) 43, 61, 583
MfeI CAATTG 1 cut(s) 199
MluCI AATT 7 cut(s) 7, 39, 88, 199, 301, 309, 426
MnlI CCTC 7 cut(s) 9, 115, 170, 223, 458, 482, 562
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 284
MspI CCGG 2 cut(s) 118, 163
MspR9I CCNGG 1 cut(s) 119
MunI CAATTG 1 cut(s) 199
NciI CCSGG 1 cut(s) 119
NdeII GATC 3 cut(s) 43, 61, 583
NlaIII CATG 2 cut(s) 487, 584
NlaIV GGNNCC 2 cut(s) 466, 539
NmeAIII GCCGAG 1 cut(s) 364
PagI TCATGA 1 cut(s) 580
PaqCI CACCTGC 1 cut(s) 409
PshBI ATTAAT 1 cut(s) 252
PspN4I GGNNCC 2 cut(s) 466, 539
PstI CTGCAG 1 cut(s) 406
RsaI GTAC 2 cut(s) 488, 526
RsaNI GTAC 2 cut(s) 487, 525
RseI CAYNNNNRTG 1 cut(s) 284
SaqAI TTAA 1 cut(s) 252
Sau3AI GATC 3 cut(s) 43, 61, 583
ScrFI CCNGG 1 cut(s) 119
SetI ASST 7 cut(s) 78, 162, 345, 403, 450, 496, 539
SfcI CTRYAG 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 284
Sse9I AATT 7 cut(s) 7, 39, 88, 199, 301, 309, 426
SsiI CCGC 1 cut(s) 149
SspI AATATT 1 cut(s) 576
SspMI CTAG 1 cut(s) 344
StyD4I CCNGG 1 cut(s) 117
TaiI ACGT 1 cut(s) 496
TaqI TCGA 2 cut(s) 217, 444
TasI AATT 7 cut(s) 7, 39, 88, 199, 301, 309, 426
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 2 cut(s) 31, 380
TspDTI ATGAA 4 cut(s) 348, 398, 472, 569
TspGWI ACGGA 1 cut(s) 554
TspRI CASTG 2 cut(s) 31, 380
VspI ATTAAT 1 cut(s) 252
XapI RAATTY 3 cut(s) 7, 88, 309
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.