Rh2AG055100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000544
Physical Location & Seq
Reverse (-)
4348045 .. 4355258
7214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG055100.1

Sequence Viewer

Length: 861 bp
ATGGCCGAGAGACGTTCTGAGCGAAGGCGTGGCAGAGGCGAATGTATCCAGGATACGATCGATGGCTTGGGATGGATATTCTATGAGGTCGTCAACTGGAAGAATGAATTGCTATGGTATCAATCGGCGCCTATCCTTCAAAAGTTGAATAAGGATGTCTTAGATGAAGTAGCATTTAGATGGGCTAACAGTATGGCTGTACCTCCCTTGGATACATACACTGTCAAAGTCAGGGATAACAAAGCCTATATTCCGAGGGAAGGCTCTCAAAACGATTCTTGGAACTACGCAATTCGGTATCGGGATTTCATTCTTTCTGTTTATGGCCCTGTGGCAGATAATAGGCTTCTTGAGGACTTTTGTAGAAAGCTGAGTGACCCAACCCTCACACTGCTCAGATTTCAGAATTTGTATTTCCATAAACTTTTACAAAGCCGGGAGGAAATCAATGACTTCCCAGTAGTGGCGGTTGAAAACCTCCGGCTTAGGAAGTTTGATTACAATGGGAGAGAGTGCAATTGGGATGTAGCTTATCGATTGTGGGCAGAGGAGAAATACCACAGGGAGATTAATCTTTTTGAAACTTGCATAAAAAACATTTATGTGTGGAGAGCCTACAAGTACAGAATTTACGGTGATAATCCCACAGATGAAGCCGAGCTAGTGCGTAATCTCATCATCCACTTCAACCAGTGCAGGATGAAGGATGTTCCCCCACCTGCAGATTTCTTTGATAAAAATCAAATTGGAGAAGTGGTATTTGACCTCTTTCCTAATATTGGTTCCAGCCTCTTTCATTTCATGTACGAACATGGAGTTTATATGGACTTCACAGAACTTCGTACATTTTACAGAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

34.45

Weight (kDa)

5.86

Isoelectric Point (pI)

50.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 727
Acc36I ACCTGC 1 cut(s) 727
AccB1I GGYRCC 1 cut(s) 127
AciI CCGC 1 cut(s) 467
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 406, 627
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 4 cut(s) 201, 623, 806, 844
AfiI CCNNNNNNNGG 3 cut(s) 260, 463, 779
AgsI TTSAA 5 cut(s) 140, 148, 473, 581, 688
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 3 cut(s) 370, 530, 661
AluI AGCT 3 cut(s) 370, 530, 661
Alw26I GTCTC 1 cut(s) 4
AoxI GGCC 2 cut(s) 3, 325
ApoI RAATTY 2 cut(s) 406, 627
AseI ATTAAT 1 cut(s) 570
AspLEI GCGC 1 cut(s) 130
AspS9I GGNCC 1 cut(s) 326
AsuC2I CCSGG 1 cut(s) 437
AsuHPI GGTGA 1 cut(s) 647
BanI GGYRCC 1 cut(s) 127
BarI GAAGNNNNNNTAC 2 cut(s) 482, 514
BccI CCATC 3 cut(s) 56, 66, 174
BciT130I CCWGG 1 cut(s) 50
BciVI GTATCC 3 cut(s) 46, 56, 205
BcnI CCSGG 1 cut(s) 437
BcoDI GTCTC 1 cut(s) 4
BfaI CTAG 1 cut(s) 662
BfmI CTRYAG 1 cut(s) 720
BfoI RGCGCY 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 727
BfuI GTATCC 3 cut(s) 46, 56, 205
Bme1390I CCNGG 2 cut(s) 50, 437
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 2 cut(s) 129, 784
BmrFI CCNGG 2 cut(s) 50, 437
BmrI ACTGGG 1 cut(s) 452
BmuI ACTGGG 1 cut(s) 452
Bpu10I CCTNAGC 1 cut(s) 485
BpuEI CTTGAG 1 cut(s) 371
BpuMI CCSGG 1 cut(s) 437
Bsa29I ATCGAT 2 cut(s) 60, 535
BsaBI GATNNNNATC 1 cut(s) 738
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 2 cut(s) 207, 254
BsaXI ACNNNNNCTCC 2 cut(s) 741, 771
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 463, 779
Bse1I ACTGG 3 cut(s) 101, 458, 691
Bse8I GATNNNNATC 1 cut(s) 738
BseBI CCWGG 1 cut(s) 50
BseCI ATCGAT 2 cut(s) 60, 535
BseDI CCNNGG 2 cut(s) 207, 254
BseGI GGATG 6 cut(s) 77, 160, 529, 678, 705, 712
BseJI GATNNNNATC 1 cut(s) 738
BseLI CCNNNNNNNGG 3 cut(s) 260, 463, 779
BseMII CTCAG 3 cut(s) 9, 362, 409
BseNI ACTGG 3 cut(s) 101, 458, 691
BseRI GAGGAG 1 cut(s) 563
BsgI GTGCAG 1 cut(s) 715
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 2 cut(s) 5, 327
BshNI GGYRCC 1 cut(s) 127
BshVI ATCGAT 2 cut(s) 60, 535
BsiEI CGRYCG 1 cut(s) 60
BsiSI CCGG 2 cut(s) 436, 481
BslI CCNNNNNNNGG 3 cut(s) 260, 463, 779
BsmAI GTCTC 1 cut(s) 4
BsmBI CGTCTC 1 cut(s) 4
BsnI GGCC 2 cut(s) 5, 327
Bsp143I GATC 1 cut(s) 57
BspACI CCGC 1 cut(s) 467
BspANI GGCC 2 cut(s) 5, 327
BspCNI CTCAG 3 cut(s) 10, 363, 408
BspDI ATCGAT 2 cut(s) 60, 535
BspLI GGNNCC 2 cut(s) 129, 784
BspMAI CTGCAG 1 cut(s) 724
BspMI ACCTGC 1 cut(s) 727
BspT107I GGYRCC 1 cut(s) 127
BsrI ACTGG 3 cut(s) 101, 458, 691
BssECI CCNNGG 2 cut(s) 207, 254
BssMI GATC 1 cut(s) 57
BssNI GRCGYC 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 3 cut(s) 191, 223, 635
BstACI GRCGYC 1 cut(s) 128
BstDEI CTNAG 5 cut(s) 18, 160, 371, 395, 485
BstF5I GGATG 6 cut(s) 77, 160, 529, 678, 705, 712
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 1 cut(s) 4
BstMBI GATC 1 cut(s) 57
BstMCI CGRYCG 1 cut(s) 60
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 48, 435
BstSFI CTRYAG 1 cut(s) 720
Bsu15I ATCGAT 2 cut(s) 60, 535
BsuI GTATCC 3 cut(s) 46, 56, 205
BsuRI GGCC 2 cut(s) 5, 327
BsuTUI ATCGAT 2 cut(s) 60, 535
BtsCI GGATG 6 cut(s) 77, 160, 529, 678, 705, 712
BtsI GCAGTG 1 cut(s) 389
BtsIMutI CAGTG 3 cut(s) 219, 389, 698
BveI ACCTGC 1 cut(s) 727
CfoI GCGC 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 326
ClaI ATCGAT 2 cut(s) 60, 535
Csp6I GTAC 4 cut(s) 200, 622, 805, 843
CviAII CATG 2 cut(s) 802, 812
CviQI GTAC 4 cut(s) 200, 622, 805, 843
DdeI CTNAG 5 cut(s) 18, 160, 371, 395, 485
DinI GGCGCC 1 cut(s) 129
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 207
EgeI GGCGCC 1 cut(s) 129
EheI GGCGCC 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 207
Esp3I CGTCTC 1 cut(s) 4
FaeI CATG 2 cut(s) 805, 815
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FatI CATG 2 cut(s) 801, 811
FokI GGATG 6 cut(s) 84, 167, 536, 665, 712, 719
FspBI CTAG 1 cut(s) 662
GlaI GCGC 1 cut(s) 129
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 2 cut(s) 5, 327
HapII CCGG 2 cut(s) 436, 481
HhaI GCGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 2 cut(s) 805, 815
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 1 cut(s) 275
HpaII CCGG 2 cut(s) 436, 481
HphI GGTGA 1 cut(s) 647
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 4 cut(s) 19, 255, 398, 405
Hpy188III TCNNGA 2 cut(s) 302, 350
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 4 cut(s) 18, 146, 254, 697
HpyCH4III ACNGT 3 cut(s) 191, 223, 635
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 4 cut(s) 516, 588, 696, 722
HpyF3I CTNAG 5 cut(s) 18, 160, 371, 395, 485
HpySE526I ACGT 1 cut(s) 13
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 2 cut(s) 805, 815
HspAI GCGC 1 cut(s) 128
KasI GGCGCC 1 cut(s) 127
Kzo9I GATC 1 cut(s) 57
MaeI CTAG 1 cut(s) 662
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 1 cut(s) 374
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 1 cut(s) 112
MfeI CAATTG 1 cut(s) 517
MluCI AATT 6 cut(s) 107, 291, 406, 517, 627, 744
Mly113I GGCGCC 1 cut(s) 128
MseI TTAA 1 cut(s) 570
MslI CAYNNNNRTG 2 cut(s) 178, 602
MspI CCGG 2 cut(s) 436, 481
MspR9I CCNGG 2 cut(s) 50, 437
MunI CAATTG 1 cut(s) 517
MvaI CCWGG 1 cut(s) 50
NarI GGCGCC 1 cut(s) 128
NciI CCSGG 1 cut(s) 437
NdeII GATC 1 cut(s) 57
NlaIII CATG 2 cut(s) 805, 815
NlaIV GGNNCC 2 cut(s) 129, 784
NmeAIII GCCGAG 2 cut(s) 31, 682
NmuCI GTSAC 1 cut(s) 374
PaqCI CACCTGC 1 cut(s) 727
PcsI WCGNNNNNNNCGW 1 cut(s) 19
PfeI GAWTC 1 cut(s) 275
PfoI TCCNGGA 1 cut(s) 48
Ple19I CGATCG 1 cut(s) 60
PluTI GGCGCC 1 cut(s) 131
PshBI ATTAAT 1 cut(s) 570
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 2 cut(s) 129, 784
PspPI GGNCC 1 cut(s) 326
PstI CTGCAG 1 cut(s) 724
PvuI CGATCG 1 cut(s) 60
RsaI GTAC 4 cut(s) 201, 623, 806, 844
RsaNI GTAC 4 cut(s) 200, 622, 805, 843
RseI CAYNNNNRTG 2 cut(s) 178, 602
SaqAI TTAA 1 cut(s) 570
Sau3AI GATC 1 cut(s) 57
Sau96I GGNCC 1 cut(s) 326
ScrFI CCNGG 2 cut(s) 50, 437
SetI ASST 9 cut(s) 16, 90, 205, 372, 480, 532, 663, 721, 768
SfcI CTRYAG 1 cut(s) 720
SfoI GGCGCC 1 cut(s) 129
SmiMI CAYNNNNRTG 2 cut(s) 178, 602
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 6 cut(s) 107, 291, 406, 517, 627, 744
SsiI CCGC 1 cut(s) 467
SspDI GGCGCC 1 cut(s) 127
SspI AATATT 1 cut(s) 778
SspMI CTAG 1 cut(s) 662
StyD4I CCNGG 2 cut(s) 48, 435
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 3 cut(s) 191, 223, 635
TaiI ACGT 1 cut(s) 16
TaqI TCGA 2 cut(s) 60, 535
TasI AATT 6 cut(s) 107, 291, 406, 517, 627, 744
TatI WGTACW 1 cut(s) 621
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TscAI CASTG 3 cut(s) 226, 396, 698
TseFI GTSAC 1 cut(s) 374
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 7 cut(s) 120, 180, 298, 666, 716, 785, 790
TspRI CASTG 3 cut(s) 226, 396, 698
VspI ATTAAT 1 cut(s) 570
XapI RAATTY 2 cut(s) 406, 627
XspI CTAG 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.