RLG00000016078

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000544
Physical Location & Seq
Forward (+)
3729666 .. 3730817
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016078

Sequence Viewer

Length: 462 bp
ATGTTCGACATTCCTCAGCCCATTCTCCAGAGTCTCACTAGGGACTTATTGAAGGGTGTACTGATCAGATGGGACGAGAACAAACCTGTTGGCTCCCTGCTTCGCAATGGAGTGGAAGTCAGGGAGGCAGTTGATTATACTGTTCATGAGGATAAAGACTATCAAAACAAGTTTAGGGAGGCTGTGGAAGCTCTTTTCGGGTTTTGTGGAACACATGAAGATAGAGACGATTTCTACCGCCTGCTTCAAATACCTCTATCTAGAAGCGTTTGGAGTTTTTACTACAGCAAGCCTTATATTGGTGCAATTGTTTATAAAACAGTCCCTGACATTATTACCAAGCTGTACTACTTTATGTTGACCTGCAACATAAACATGGACTTCAAGAAGATCTTGATTACACCCTCGGAAGAGGGACAGTCCCTAACATGGCGATTTTGGGTTGCTCGTGCTGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

18.07

Weight (kDa)

5.71

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 315
Acc36I ACCTGC 1 cut(s) 371
AciI CCGC 1 cut(s) 238
AcsI RAATTY 1 cut(s) 456
AfaI GTAC 2 cut(s) 60, 347
AfiI CCNNNNNNNGG 2 cut(s) 299, 429
AgsI TTSAA 3 cut(s) 52, 248, 385
AluBI AGCT 2 cut(s) 191, 343
AluI AGCT 2 cut(s) 191, 343
Alw26I GTCTC 2 cut(s) 38, 219
AlwNI CAGNNNCTG 1 cut(s) 326
ApoI RAATTY 1 cut(s) 456
BauI CACGAG 1 cut(s) 447
BbvCI CCTCAGC 1 cut(s) 15
BccI CCATC 1 cut(s) 63
BclI TGATCA 1 cut(s) 63
BcoDI GTCTC 2 cut(s) 38, 219
BfaI CTAG 2 cut(s) 39, 261
BfmI CTRYAG 1 cut(s) 283
BfuAI ACCTGC 1 cut(s) 371
BglII AGATCT 1 cut(s) 390
BmiI GGNNCC 1 cut(s) 94
BpmI CTGGAG 1 cut(s) 11
Bpu10I CCTNAGC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 405
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 429
Bse3DI GCAATG 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 405
BseLI CCNNNNNNNGG 2 cut(s) 299, 429
BseMI GCAATG 1 cut(s) 112
BseMII CTCAG 1 cut(s) 29
BslFI GGGAC 5 cut(s) 56, 86, 308, 406, 429
BslI CCNNNNNNNGG 2 cut(s) 299, 429
BsmAI GTCTC 2 cut(s) 38, 219
BsmBI CGTCTC 1 cut(s) 219
BsmFI GGGAC 5 cut(s) 56, 86, 308, 406, 429
Bsp143I GATC 2 cut(s) 63, 390
BspACI CCGC 1 cut(s) 238
BspCNI CTCAG 1 cut(s) 28
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 94
BspMI ACCTGC 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 405
BssMI GATC 2 cut(s) 63, 390
BssSI CACGAG 1 cut(s) 447
Bst2BI CACGAG 1 cut(s) 447
Bst4CI ACNGT 3 cut(s) 142, 322, 420
Bst6I CTCTTC 1 cut(s) 405
BstC8I GCNNGC 2 cut(s) 242, 290
BstDEI CTNAG 1 cut(s) 15
BstKTI GATC 2 cut(s) 66, 393
BstMAI GTCTC 2 cut(s) 38, 219
BstMBI GATC 2 cut(s) 63, 390
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstSFI CTRYAG 1 cut(s) 283
BstX2I RGATCY 1 cut(s) 390
BstYI RGATCY 1 cut(s) 390
BveI ACCTGC 1 cut(s) 371
Cac8I GCNNGC 2 cut(s) 242, 290
CaiI CAGNNNCTG 1 cut(s) 326
CciI TCATGA 1 cut(s) 145
Csp6I GTAC 2 cut(s) 59, 346
CviAII CATG 4 cut(s) 146, 215, 376, 429
CviJI RGCY 6 cut(s) 19, 93, 182, 191, 292, 343
CviKI_1 RGCY 6 cut(s) 19, 93, 182, 191, 292, 343
CviQI GTAC 2 cut(s) 59, 346
DdeI CTNAG 1 cut(s) 15
DpnI GATC 2 cut(s) 65, 392
DpnII GATC 2 cut(s) 63, 390
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Esp3I CGTCTC 1 cut(s) 219
FaeI CATG 4 cut(s) 149, 218, 379, 432
FaiI YATR 9 cut(s) 138, 147, 216, 297, 315, 356, 371, 377, 430
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FaqI GGGAC 5 cut(s) 56, 86, 308, 406, 429
FatI CATG 4 cut(s) 145, 214, 375, 428
FbaI TGATCA 1 cut(s) 63
FspBI CTAG 2 cut(s) 39, 261
GsuI CTGGAG 1 cut(s) 11
Hin1II CATG 4 cut(s) 149, 218, 379, 432
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HinfI GANTC 1 cut(s) 31
Hpy166II GTNNAC 2 cut(s) 59, 360
Hpy188I TCNGA 2 cut(s) 68, 409
Hpy188III TCNNGA 5 cut(s) 28, 146, 261, 385, 394
Hpy8I GTNNAC 2 cut(s) 59, 360
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 3 cut(s) 142, 322, 420
HpyCH4V TGCA 2 cut(s) 305, 366
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 15
Hsp92II CATG 4 cut(s) 149, 218, 379, 432
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 2 cut(s) 63, 390
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 7 cut(s) 41, 99, 106, 110, 254, 339, 376
MaeI CTAG 2 cut(s) 39, 261
MalI GATC 2 cut(s) 65, 392
MboI GATC 2 cut(s) 63, 390
MboII GAAGA 3 cut(s) 230, 400, 422
MfeI CAATTG 1 cut(s) 306
MflI RGATCY 1 cut(s) 390
MluCI AATT 2 cut(s) 306, 456
MlyI GAGTC 1 cut(s) 40
MnlI CCTC 7 cut(s) 24, 118, 142, 172, 264, 406, 415
MslI CAYNNNNRTG 1 cut(s) 374
MunI CAATTG 1 cut(s) 306
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeII GATC 2 cut(s) 63, 390
NlaIII CATG 4 cut(s) 149, 218, 379, 432
NlaIV GGNNCC 1 cut(s) 94
PagI TCATGA 1 cut(s) 145
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
PsiI TTATAA 1 cut(s) 315
PspN4I GGNNCC 1 cut(s) 94
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 1 cut(s) 390
RsaI GTAC 2 cut(s) 60, 347
RsaNI GTAC 2 cut(s) 59, 346
RseI CAYNNNNRTG 1 cut(s) 374
Sau3AI GATC 2 cut(s) 63, 390
SchI GAGTC 1 cut(s) 40
SetI ASST 5 cut(s) 88, 193, 256, 345, 365
SfcI CTRYAG 1 cut(s) 283
SmiMI CAYNNNNRTG 1 cut(s) 374
Sse9I AATT 2 cut(s) 306, 456
SsiI CCGC 1 cut(s) 238
SspMI CTAG 2 cut(s) 39, 261
TaaI ACNGT 3 cut(s) 142, 322, 420
TaqI TCGA 1 cut(s) 6
TasI AATT 2 cut(s) 306, 456
TatI WGTACW 2 cut(s) 58, 345
TspDTI ATGAA 2 cut(s) 134, 231
XapI RAATTY 1 cut(s) 456
XbaI TCTAGA 1 cut(s) 260
XspI CTAG 2 cut(s) 39, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.