The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TPR_COPA_B | PF23953 | 2 - 69 | 3.9e-18 | COPA/B TPR domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 256 |
| AclWI | GGATC | 1 cut(s) | 355 |
| AcoI | YGGCCR | 1 cut(s) | 387 |
| AcsI | RAATTY | 1 cut(s) | 44 |
| AcuI | CTGAAG | 1 cut(s) | 192 |
| AfaI | GTAC | 1 cut(s) | 264 |
| AluBI | AGCT | 3 cut(s) | 64, 130, 143 |
| AluI | AGCT | 3 cut(s) | 64, 130, 143 |
| AlwI | GGATC | 1 cut(s) | 355 |
| AoxI | GGCC | 2 cut(s) | 303, 387 |
| ApeKI | GCWGC | 1 cut(s) | 127 |
| ApoI | RAATTY | 1 cut(s) | 44 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 398 |
| AspLEI | GCGC | 1 cut(s) | 106 |
| AspS9I | GGNCC | 2 cut(s) | 210, 303 |
| AsuNHI | GCTAGC | 1 cut(s) | 272 |
| AvaII | GGWCC | 1 cut(s) | 210 |
| BbvI | GCAGC | 1 cut(s) | 139 |
| BccI | CCATC | 2 cut(s) | 187, 362 |
| BceAI | ACGGC | 1 cut(s) | 374 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 74, 108 |
| BfaI | CTAG | 2 cut(s) | 65, 273 |
| BfmI | CTRYAG | 1 cut(s) | 473 |
| BisI | GCNGC | 1 cut(s) | 128 |
| BlsI | GCNGC | 1 cut(s) | 129 |
| Bme18I | GGWCC | 1 cut(s) | 210 |
| BmgT120I | GGNCC | 2 cut(s) | 210, 303 |
| BmiI | GGNNCC | 1 cut(s) | 235 |
| BmrI | ACTGGG | 1 cut(s) | 310 |
| BmsI | GCATC | 2 cut(s) | 437, 456 |
| BmtI | GCTAGC | 1 cut(s) | 276 |
| BmuI | ACTGGG | 1 cut(s) | 310 |
| BpmI | CTGGAG | 1 cut(s) | 95 |
| BpuEI | CTTGAG | 1 cut(s) | 408 |
| BsaBI | GATNNNNATC | 1 cut(s) | 417 |
| BsaJI | CCNNGG | 1 cut(s) | 84 |
| BsaWI | WCCGGW | 2 cut(s) | 16, 207 |
| Bse1I | ACTGG | 3 cut(s) | 266, 305, 454 |
| Bse8I | GATNNNNATC | 1 cut(s) | 417 |
| BseDI | CCNNGG | 1 cut(s) | 84 |
| BseGI | GGATG | 2 cut(s) | 16, 198 |
| BseJI | GATNNNNATC | 1 cut(s) | 417 |
| BseNI | ACTGG | 3 cut(s) | 266, 305, 454 |
| BseXI | GCAGC | 1 cut(s) | 139 |
| BseYI | CCCAGC | 1 cut(s) | 130 |
| BshFI | GGCC | 2 cut(s) | 305, 389 |
| BsiSI | CCGG | 2 cut(s) | 17, 208 |
| BsnI | GGCC | 2 cut(s) | 305, 389 |
| Bsp143I | GATC | 3 cut(s) | 49, 347, 412 |
| BspANI | GGCC | 2 cut(s) | 305, 389 |
| BspLI | GGNNCC | 1 cut(s) | 235 |
| BspOI | GCTAGC | 1 cut(s) | 276 |
| BspPI | GGATC | 1 cut(s) | 355 |
| BsrI | ACTGG | 3 cut(s) | 266, 305, 454 |
| BssECI | CCNNGG | 1 cut(s) | 84 |
| BssMI | GATC | 3 cut(s) | 49, 347, 412 |
| Bst4CI | ACNGT | 5 cut(s) | 110, 214, 328, 410, 474 |
| BstC8I | GCNNGC | 1 cut(s) | 274 |
| BstF5I | GGATG | 2 cut(s) | 16, 198 |
| BstHHI | GCGC | 1 cut(s) | 106 |
| BstKTI | GATC | 3 cut(s) | 52, 350, 415 |
| BstMBI | GATC | 3 cut(s) | 49, 347, 412 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 101 |
| BstSFI | CTRYAG | 1 cut(s) | 473 |
| BstV1I | GCAGC | 1 cut(s) | 139 |
| BsuRI | GGCC | 2 cut(s) | 305, 389 |
| BtsCI | GGATG | 2 cut(s) | 16, 198 |
| BtsIMutI | CAGTG | 2 cut(s) | 115, 470 |
| Cac8I | GCNNGC | 1 cut(s) | 274 |
| CfoI | GCGC | 1 cut(s) | 106 |
| Cfr13I | GGNCC | 2 cut(s) | 210, 303 |
| CpoI | CGGWCCG | 1 cut(s) | 210 |
| Csp6I | GTAC | 1 cut(s) | 263 |
| CspI | CGGWCCG | 1 cut(s) | 210 |
| CviAII | CATG | 2 cut(s) | 188, 277 |
| CviJI | RGCY | 5 cut(s) | 64, 130, 143, 305, 389 |
| CviKI_1 | RGCY | 5 cut(s) | 64, 130, 143, 305, 389 |
| CviQI | GTAC | 1 cut(s) | 263 |
| DpnI | GATC | 3 cut(s) | 51, 349, 414 |
| DpnII | GATC | 3 cut(s) | 49, 347, 412 |
| EaeI | YGGCCR | 1 cut(s) | 387 |
| Eco47I | GGWCC | 1 cut(s) | 210 |
| Eco57I | CTGAAG | 1 cut(s) | 192 |
| FaeI | CATG | 2 cut(s) | 191, 280 |
| FaiI | YATR | 8 cut(s) | 31, 146, 182, 189, 225, 278, 312, 434 |
| FatI | CATG | 2 cut(s) | 187, 276 |
| FblI | GTMKAC | 1 cut(s) | 256 |
| Fnu4HI | GCNGC | 1 cut(s) | 128 |
| FokI | GGATG | 2 cut(s) | 23, 205 |
| Fsp4HI | GCNGC | 1 cut(s) | 128 |
| FspBI | CTAG | 2 cut(s) | 65, 273 |
| GlaI | GCGC | 1 cut(s) | 105 |
| GluI | GCNGC | 1 cut(s) | 128 |
| GsaI | CCCAGC | 1 cut(s) | 134 |
| GsuI | CTGGAG | 1 cut(s) | 95 |
| HaeIII | GGCC | 2 cut(s) | 305, 389 |
| HapII | CCGG | 2 cut(s) | 17, 208 |
| HhaI | GCGC | 1 cut(s) | 106 |
| Hin1II | CATG | 2 cut(s) | 191, 280 |
| Hin6I | GCGC | 1 cut(s) | 104 |
| HinP1I | GCGC | 1 cut(s) | 104 |
| HincII | GTYRAC | 1 cut(s) | 257 |
| HindII | GTYRAC | 1 cut(s) | 257 |
| HinfI | GANTC | 2 cut(s) | 113, 443 |
| HpaII | CCGG | 2 cut(s) | 17, 208 |
| Hpy166II | GTNNAC | 1 cut(s) | 257 |
| Hpy188I | TCNGA | 2 cut(s) | 37, 205 |
| Hpy188III | TCNNGA | 2 cut(s) | 74, 403 |
| Hpy8I | GTNNAC | 1 cut(s) | 257 |
| HpyAV | CCTTC | 2 cut(s) | 224, 388 |
| HpyCH4III | ACNGT | 5 cut(s) | 110, 214, 328, 410, 474 |
| HpyCH4V | TGCA | 1 cut(s) | 14 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 101 |
| Hsp92II | CATG | 2 cut(s) | 191, 280 |
| HspAI | GCGC | 1 cut(s) | 104 |
| Kzo9I | GATC | 3 cut(s) | 49, 347, 412 |
| LpnPI | CCDG | 8 cut(s) | 30, 59, 116, 138, 221, 279, 286, 467 |
| Lsp1109I | GCAGC | 1 cut(s) | 139 |
| LweI | GCATC | 2 cut(s) | 437, 456 |
| MaeI | CTAG | 2 cut(s) | 65, 273 |
| MalI | GATC | 3 cut(s) | 51, 349, 414 |
| MboI | GATC | 3 cut(s) | 49, 347, 412 |
| MboII | GAAGA | 1 cut(s) | 185 |
| MluCI | AATT | 2 cut(s) | 44, 137 |
| MnlI | CCTC | 3 cut(s) | 79, 160, 432 |
| MroXI | GAANNNNTTC | 1 cut(s) | 398 |
| MseI | TTAA | 1 cut(s) | 449 |
| MspA1I | CMGCKG | 1 cut(s) | 130 |
| MspI | CCGG | 2 cut(s) | 17, 208 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 101 |
| NdeII | GATC | 3 cut(s) | 49, 347, 412 |
| NheI | GCTAGC | 1 cut(s) | 272 |
| NlaIII | CATG | 2 cut(s) | 191, 280 |
| NlaIV | GGNNCC | 1 cut(s) | 235 |
| NmeAIII | GCCGAG | 1 cut(s) | 109 |
| PdmI | GAANNNNTTC | 1 cut(s) | 398 |
| PfeI | GAWTC | 2 cut(s) | 113, 443 |
| PkrI | GCNGC | 1 cut(s) | 129 |
| PspFI | CCCAGC | 1 cut(s) | 130 |
| PspN4I | GGNNCC | 1 cut(s) | 235 |
| PspPI | GGNCC | 2 cut(s) | 210, 303 |
| PvuII | CAGCTG | 1 cut(s) | 130 |
| RsaI | GTAC | 1 cut(s) | 264 |
| RsaNI | GTAC | 1 cut(s) | 263 |
| Rsr2I | CGGWCCG | 1 cut(s) | 210 |
| RsrII | CGGWCCG | 1 cut(s) | 210 |
| SalI | GTCGAC | 1 cut(s) | 255 |
| SaqAI | TTAA | 1 cut(s) | 449 |
| SatI | GCNGC | 1 cut(s) | 128 |
| Sau3AI | GATC | 3 cut(s) | 49, 347, 412 |
| Sau96I | GGNCC | 2 cut(s) | 210, 303 |
| SetI | ASST | 4 cut(s) | 66, 70, 132, 145 |
| SfaNI | GCATC | 2 cut(s) | 437, 456 |
| SfcI | CTRYAG | 1 cut(s) | 473 |
| SinI | GGWCC | 1 cut(s) | 210 |
| SmlI | CTYRAG | 1 cut(s) | 423 |
| SmoI | CTYRAG | 1 cut(s) | 423 |
| Sse9I | AATT | 2 cut(s) | 44, 137 |
| SspMI | CTAG | 2 cut(s) | 65, 273 |
| TaaI | ACNGT | 5 cut(s) | 110, 214, 328, 410, 474 |
| TaqI | TCGA | 1 cut(s) | 256 |
| TasI | AATT | 2 cut(s) | 44, 137 |
| TfiI | GAWTC | 2 cut(s) | 113, 443 |
| Tru1I | TTAA | 1 cut(s) | 449 |
| Tru9I | TTAA | 1 cut(s) | 449 |
| TscAI | CASTG | 2 cut(s) | 115, 477 |
| TseI | GCWGC | 1 cut(s) | 127 |
| TspDTI | ATGAA | 2 cut(s) | 330, 456 |
| TspRI | CASTG | 2 cut(s) | 115, 477 |
| VpaK11BI | GGWCC | 1 cut(s) | 210 |
| XapI | RAATTY | 1 cut(s) | 44 |
| XmiI | GTMKAC | 1 cut(s) | 256 |
| XmnI | GAANNNNTTC | 1 cut(s) | 398 |
| XspI | CTAG | 2 cut(s) | 65, 273 |