Rh2AG062100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000544
Physical Location & Seq
Reverse (-)
5088915 .. 5092066
3152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG062100.1

Sequence Viewer

Length: 615 bp
ATGCCCTGGTTCTTCCTGCGGTTGGCTCTGGTCCCGGTCTATTACGCTGGCAGAACTAGAAGCTTTGTTGTTCGAGTCTTTGGGGGAACGGGGTCCTGGAAGGATTTGGATGACTTCCTGTCCAGATTAACCATCCCAGGGCTCAGCAGGGAACAGTTCACTGCTTTGTACTTCCACAGGCTGTTGCAGAACAAAGAACAGCGGGCAGTGGTGCCTGTTGAATTTGTAGATAAGATGCGCAACCGTTTAGTGACTTATAATGGAACTGTAAAGCGCTGGGAAGCGGCTTACAATGACTGGGAGCAAACAGTCTATCCGGAGAAAATAGATTTAGAACAGGCTTGCAGTAAAGATCCCTGGGCTCTAAAAGTTTTCAAACATACGACAACATATAATAATACTCCAGCTAGTCGAGTGAAGCTTGCCCGCAACATAATCATACATTTGAACGACCATCGGATTGGCAAGAAGCAATCTATTTACACTTCATACGAGCTTGGCGCTCTGGTGGATGAGCTATTCCCCAACCTCAGCTCTAGATTGTTCGAGTTTCTGTGGAAGCAATGCATCAGCCTGGACTTCAAGAGGTCCAGGAACACTTTCAAATCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

24.07

Weight (kDa)

9.74

Isoelectric Point (pI)

44.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 258
Acc16I TGCGCA 1 cut(s) 239
AccB1I GGYRCC 1 cut(s) 211
AccIII TCCGGA 1 cut(s) 316
AciI CCGC 4 cut(s) 19, 202, 284, 427
AclWI GGATC 1 cut(s) 347
AcsI RAATTY 1 cut(s) 221
AfaI GTAC 1 cut(s) 170
AfeI AGCGCT 1 cut(s) 275
AfiI CCNNNNNNNGG 2 cut(s) 22, 138
AgsI TTSAA 5 cut(s) 221, 376, 448, 583, 604
AhdI GACNNNNNGTC 1 cut(s) 118
AjnI CCWGG 6 cut(s) 5, 95, 136, 356, 573, 590
AluBI AGCT 6 cut(s) 63, 407, 421, 496, 517, 534
AluI AGCT 6 cut(s) 63, 407, 421, 496, 517, 534
AlwI GGATC 1 cut(s) 347
Aor13HI TCCGGA 1 cut(s) 316
Aor51HI AGCGCT 1 cut(s) 275
ApoI RAATTY 1 cut(s) 221
Asp700I GAANNNNTTC 1 cut(s) 599
AspLEI GCGC 3 cut(s) 240, 276, 503
AspS9I GGNCC 3 cut(s) 31, 93, 588
AsuC2I CCSGG 1 cut(s) 35
AvaII GGWCC 3 cut(s) 31, 93, 588
BanI GGYRCC 1 cut(s) 211
BanII GRGCYC 2 cut(s) 144, 364
BbvCI CCTCAGC 1 cut(s) 530
BccI CCATC 2 cut(s) 140, 462
BciT130I CCWGG 6 cut(s) 7, 97, 138, 358, 575, 592
BcnI CCSGG 1 cut(s) 35
BfaI CTAG 3 cut(s) 57, 408, 537
BfoI RGCGCY 2 cut(s) 277, 504
BisI GCNGC 1 cut(s) 285
BlpI GCTNAGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 7 cut(s) 7, 35, 97, 138, 358, 575, 592
Bme18I GGWCC 3 cut(s) 31, 93, 588
BmeRI GACNNNNNGTC 1 cut(s) 118
BmgT120I GGNCC 3 cut(s) 31, 93, 588
BmiI GGNNCC 3 cut(s) 33, 94, 213
BmrFI CCNGG 7 cut(s) 7, 35, 97, 138, 358, 575, 592
BmrI ACTGGG 1 cut(s) 307
BmsI GCATC 2 cut(s) 225, 576
BmuI ACTGGG 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 387
Bpu10I CCTNAGC 1 cut(s) 530
Bpu1102I GCTNAGC 1 cut(s) 143
BpuMI CCSGG 1 cut(s) 35
BsaJI CCNNGG 5 cut(s) 5, 136, 137, 356, 357
BsaWI WCCGGW 1 cut(s) 316
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 138
Bse1I ACTGG 1 cut(s) 302
Bse3DI GCAATG 1 cut(s) 569
BseAI TCCGGA 1 cut(s) 316
BseBI CCWGG 6 cut(s) 7, 97, 138, 358, 575, 592
BseDI CCNNGG 5 cut(s) 5, 136, 137, 356, 357
BseGI GGATG 3 cut(s) 115, 132, 517
BseLI CCNNNNNNNGG 2 cut(s) 22, 138
BseMI GCAATG 1 cut(s) 569
BseMII CTCAG 2 cut(s) 157, 544
BseNI ACTGG 1 cut(s) 302
BseYI CCCAGC 1 cut(s) 276
BshNI GGYRCC 1 cut(s) 211
BsiSI CCGG 2 cut(s) 35, 317
BslFI GGGAC 1 cut(s) 17
BslI CCNNNNNNNGG 2 cut(s) 22, 138
BsmFI GGGAC 1 cut(s) 17
Bsp1286I GDGCHC 2 cut(s) 144, 364
Bsp13I TCCGGA 1 cut(s) 316
Bsp143I GATC 1 cut(s) 352
Bsp1720I GCTNAGC 1 cut(s) 143
BspACI CCGC 4 cut(s) 19, 202, 284, 427
BspCNI CTCAG 2 cut(s) 156, 543
BspEI TCCGGA 1 cut(s) 316
BspLI GGNNCC 3 cut(s) 33, 94, 213
BspPI GGATC 1 cut(s) 347
BspT107I GGYRCC 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 569
BsrI ACTGG 1 cut(s) 302
BssECI CCNNGG 5 cut(s) 5, 136, 137, 356, 357
BssMI GATC 1 cut(s) 352
Bst2UI CCWGG 6 cut(s) 7, 97, 138, 358, 575, 592
Bst4CI ACNGT 4 cut(s) 156, 245, 268, 310
BstC8I GCNNGC 5 cut(s) 49, 204, 343, 423, 427
BstDEI CTNAG 2 cut(s) 143, 530
BstF5I GGATG 3 cut(s) 115, 132, 517
BstH2I RGCGCY 2 cut(s) 277, 504
BstHHI GCGC 3 cut(s) 240, 276, 503
BstKTI GATC 1 cut(s) 355
BstMBI GATC 1 cut(s) 352
BstNI CCWGG 6 cut(s) 7, 97, 138, 358, 575, 592
BstSCI CCNGG 7 cut(s) 5, 33, 95, 136, 356, 573, 590
BstX2I RGATCY 1 cut(s) 352
BstXI CCANNNNNNTGG 1 cut(s) 461
BstYI RGATCY 1 cut(s) 352
BtsCI GGATG 3 cut(s) 115, 132, 517
BtsI GCAGTG 2 cut(s) 159, 213
BtsIMutI CAGTG 2 cut(s) 159, 213
Cac8I GCNNGC 5 cut(s) 49, 204, 343, 423, 427
CfoI GCGC 3 cut(s) 240, 276, 503
Cfr13I GGNCC 3 cut(s) 31, 93, 588
Csp6I GTAC 1 cut(s) 169
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 2 cut(s) 143, 530
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
DriI GACNNNNNGTC 1 cut(s) 118
Eam1105I GACNNNNNGTC 1 cut(s) 118
Eco24I GRGCYC 2 cut(s) 144, 364
Eco47I GGWCC 3 cut(s) 31, 93, 588
Eco47III AGCGCT 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 93
EcoRII CCWGG 6 cut(s) 5, 95, 136, 356, 573, 590
EcoT22I ATGCAT 1 cut(s) 569
EcoT38I GRGCYC 2 cut(s) 144, 364
FaiI YATR 9 cut(s) 258, 381, 391, 393, 434, 440, 490, 611, 613
FaqI GGGAC 1 cut(s) 17
FauI CCCGC 2 cut(s) 195, 434
FauNDI CATATG 1 cut(s) 611
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 3 cut(s) 119, 122, 524
FriOI GRGCYC 2 cut(s) 144, 364
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 3 cut(s) 57, 408, 537
FspI TGCGCA 1 cut(s) 239
GlaI GCGC 3 cut(s) 239, 275, 502
GluI GCNGC 1 cut(s) 285
GsaI CCCAGC 1 cut(s) 280
GsuI CTGGAG 1 cut(s) 387
HaeII RGCGCY 2 cut(s) 277, 504
HapII CCGG 2 cut(s) 35, 317
HhaI GCGC 3 cut(s) 240, 276, 503
Hin6I GCGC 3 cut(s) 238, 274, 501
HinP1I GCGC 3 cut(s) 238, 274, 501
HindIII AAGCTT 2 cut(s) 61, 419
HinfI GANTC 1 cut(s) 75
HpaII CCGG 2 cut(s) 35, 317
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 1 cut(s) 459
Hpy188III TCNNGA 4 cut(s) 123, 317, 537, 583
Hpy8I GTNNAC 1 cut(s) 159
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 4 cut(s) 156, 245, 268, 310
HpyCH4V TGCA 3 cut(s) 187, 345, 567
HpyF3I CTNAG 2 cut(s) 143, 530
HspAI GCGC 3 cut(s) 238, 274, 501
Kpn2I TCCGGA 1 cut(s) 316
Kzo9I GATC 1 cut(s) 352
LmnI GCTCC 1 cut(s) 301
LweI GCATC 2 cut(s) 225, 576
MaeI CTAG 3 cut(s) 57, 408, 537
MaeIII GTNAC 1 cut(s) 250
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 1 cut(s) 4
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 2 cut(s) 144, 364
MluCI AATT 1 cut(s) 221
MlyI GAGTC 1 cut(s) 84
MnlI CCTC 2 cut(s) 539, 579
Mph1103I ATGCAT 1 cut(s) 569
MroI TCCGGA 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 599
MseI TTAA 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 202
MspI CCGG 2 cut(s) 35, 317
MspR9I CCNGG 7 cut(s) 7, 35, 97, 138, 358, 575, 592
MvaI CCWGG 6 cut(s) 7, 97, 138, 358, 575, 592
NciI CCSGG 1 cut(s) 35
NdeI CATATG 1 cut(s) 611
NdeII GATC 1 cut(s) 352
NlaIV GGNNCC 3 cut(s) 33, 94, 213
NmuCI GTSAC 1 cut(s) 250
NsbI TGCGCA 1 cut(s) 239
NsiI ATGCAT 1 cut(s) 569
PasI CCCWGGG 2 cut(s) 137, 357
PdmI GAANNNNTTC 1 cut(s) 599
PfoI TCCNGGA 2 cut(s) 95, 590
PkrI GCNGC 1 cut(s) 286
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
PpuMI RGGWCCY 1 cut(s) 93
PsiI TTATAA 1 cut(s) 258
Psp5II RGGWCCY 1 cut(s) 93
Psp6I CCWGG 6 cut(s) 5, 95, 136, 356, 573, 590
PspFI CCCAGC 1 cut(s) 276
PspGI CCWGG 6 cut(s) 5, 95, 136, 356, 573, 590
PspN4I GGNNCC 3 cut(s) 33, 94, 213
PspPI GGNCC 3 cut(s) 31, 93, 588
PspPPI RGGWCCY 1 cut(s) 93
PsuI RGATCY 1 cut(s) 352
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 1 cut(s) 352
Sau96I GGNCC 3 cut(s) 31, 93, 588
SchI GAGTC 1 cut(s) 84
ScrFI CCNGG 7 cut(s) 7, 35, 97, 138, 358, 575, 592
SduI GDGCHC 2 cut(s) 144, 364
SetI ASST 8 cut(s) 65, 409, 423, 498, 519, 531, 536, 590
SfaNI GCATC 2 cut(s) 225, 576
SinI GGWCC 3 cut(s) 31, 93, 588
Sse9I AATT 1 cut(s) 221
SsiI CCGC 4 cut(s) 19, 202, 284, 427
SspMI CTAG 3 cut(s) 57, 408, 537
StyD4I CCNGG 7 cut(s) 5, 33, 95, 136, 356, 573, 590
TaaI ACNGT 4 cut(s) 156, 245, 268, 310
TaqI TCGA 3 cut(s) 73, 412, 546
TasI AATT 1 cut(s) 221
TatI WGTACW 1 cut(s) 168
TauI GCSGC 1 cut(s) 287
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TscAI CASTG 2 cut(s) 166, 213
TseFI GTSAC 1 cut(s) 250
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 1 cut(s) 477
TspRI CASTG 2 cut(s) 166, 213
VpaK11BI GGWCC 3 cut(s) 31, 93, 588
XapI RAATTY 1 cut(s) 221
XbaI TCTAGA 1 cut(s) 536
XmnI GAANNNNTTC 1 cut(s) 599
XspI CTAG 3 cut(s) 57, 408, 537
Zsp2I ATGCAT 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.