Rroxscaffold_2G00151500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000544
Physical Location & Seq
Forward (+)
88739413 .. 88742989
3577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00151500.1

Sequence Viewer

Length: 459 bp
ATGGCTTCTTCTACCGCGGGGCGATGCTTGTTGGTAGCGGTGTTATTGGCACGATTCTTTGGCCGCGGATCGGAAGAGTTAGCTTTAAGAGGTCATTTTACAAGTGGGAAGTGGCTTATGAGAAATGGAAAGCATTCAAGAATGGGGGCAGCAATAAGAAATATAACTTGCTACAAGCTAGTACGAAGGACATGGGGCTGCAATGATATGGAATTTTACGAGCATAAGAAATCCAGCAATCGTGTGGATGAAGCCGAGTTCGAACGTAACATTGTTCATCACCTTAATGAAAAACAAGAAAGGGCAACACCACCAATGCGCCCATTGGGTAAGAACCGTATAGGCCACACAGTTTATAGAGTGATGTCCGGCATAAACTCTAAGTTGGTTGACTTTATGTTTGATTGTTACATCGACATGGACTTTGATCAAGCCCTTATCCACCTCCGCGATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.66

Weight (kDa)

9.47

Isoelectric Point (pI)

32.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 17, 66, 450
AciI CCGC 6 cut(s) 15, 17, 38, 64, 66, 448
AclWI GGATC 1 cut(s) 76
AcoI YGGCCR 1 cut(s) 61
AcsI RAATTY 1 cut(s) 212
AfaI GTAC 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 1 cut(s) 138
AluBI AGCT 2 cut(s) 83, 178
AluI AGCT 2 cut(s) 83, 178
AlwI GGATC 1 cut(s) 76
AoxI GGCC 2 cut(s) 61, 343
ApeKI GCWGC 2 cut(s) 149, 198
ApoI RAATTY 1 cut(s) 212
ArsI GACNNNNNNTTYG 4 cut(s) 383, 407, 415, 439
Asp700I GAANNNNTTC 1 cut(s) 133
AspLEI GCGC 1 cut(s) 321
AsuHPI GGTGA 1 cut(s) 272
AsuII TTCGAA 1 cut(s) 261
BbvI GCAGC 2 cut(s) 161, 185
BclI TGATCA 1 cut(s) 427
BfaI CTAG 2 cut(s) 179, 457
BisI GCNGC 3 cut(s) 64, 150, 199
BlsI GCNGC 3 cut(s) 65, 151, 200
BmsI GCATC 1 cut(s) 14
Bpu14I TTCGAA 1 cut(s) 261
BsaJI CCNNGG 2 cut(s) 15, 64
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse3DI GCAATG 1 cut(s) 208
BseDI CCNNGG 2 cut(s) 15, 64
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMI GCAATG 1 cut(s) 208
BseXI GCAGC 2 cut(s) 161, 185
Bsh1236I CGCG 3 cut(s) 17, 66, 450
BshFI GGCC 2 cut(s) 63, 345
BsiSI CCGG 1 cut(s) 369
BslI CCNNNNNNNGG 1 cut(s) 70
BsmI GAATGC 1 cut(s) 133
BsnI GGCC 2 cut(s) 63, 345
Bsp119I TTCGAA 1 cut(s) 261
Bsp143I GATC 2 cut(s) 68, 427
BspACI CCGC 6 cut(s) 15, 17, 38, 64, 66, 448
BspANI GGCC 2 cut(s) 63, 345
BspFNI CGCG 3 cut(s) 17, 66, 450
BspPI GGATC 1 cut(s) 76
BspT104I TTCGAA 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 208
BssECI CCNNGG 2 cut(s) 15, 64
BssMI GATC 2 cut(s) 68, 427
Bst4CI ACNGT 2 cut(s) 338, 352
Bst6I CTCTTC 1 cut(s) 69
BstBI TTCGAA 1 cut(s) 261
BstDEI CTNAG 1 cut(s) 381
BstDSI CCRYGG 2 cut(s) 15, 64
BstF5I GGATG 1 cut(s) 253
BstFNI CGCG 3 cut(s) 17, 66, 450
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 2 cut(s) 71, 430
BstMBI GATC 2 cut(s) 68, 427
BstUI CGCG 3 cut(s) 17, 66, 450
BstV1I GCAGC 2 cut(s) 161, 185
BsuRI GGCC 2 cut(s) 63, 345
BtgI CCRYGG 2 cut(s) 15, 64
BtgZI GCGATG 1 cut(s) 37
BtsCI GGATG 1 cut(s) 253
CfoI GCGC 1 cut(s) 321
Cfr42I CCGCGG 2 cut(s) 18, 67
Csp6I GTAC 1 cut(s) 182
CviAII CATG 2 cut(s) 192, 418
CviJI RGCY 9 cut(s) 5, 63, 83, 115, 178, 198, 254, 345, 434
CviKI_1 RGCY 9 cut(s) 5, 63, 83, 115, 178, 198, 254, 345, 434
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 1 cut(s) 381
DpnI GATC 2 cut(s) 70, 429
DpnII GATC 2 cut(s) 68, 427
EaeI YGGCCR 1 cut(s) 61
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
FaeI CATG 2 cut(s) 195, 421
FatI CATG 2 cut(s) 191, 417
FauI CCCGC 1 cut(s) 10
FbaI TGATCA 1 cut(s) 427
Fnu4HI GCNGC 3 cut(s) 64, 150, 199
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 3 cut(s) 64, 150, 199
FspBI CTAG 2 cut(s) 179, 457
GlaI GCGC 1 cut(s) 320
GluI GCNGC 3 cut(s) 64, 150, 199
HaeIII GGCC 2 cut(s) 63, 345
HapII CCGG 1 cut(s) 369
HhaI GCGC 1 cut(s) 321
Hin1II CATG 2 cut(s) 195, 421
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 1 cut(s) 54
HpaII CCGG 1 cut(s) 369
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 138
Hpy8I GTNNAC 1 cut(s) 391
HpyAV CCTTC 1 cut(s) 180
HpyCH4III ACNGT 2 cut(s) 338, 352
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 1 cut(s) 201
HpyF3I CTNAG 1 cut(s) 381
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 2 cut(s) 195, 421
HspAI GCGC 1 cut(s) 319
Ksp22I TGATCA 1 cut(s) 427
KspI CCGCGG 2 cut(s) 18, 67
Kzo9I GATC 2 cut(s) 68, 427
LpnPI CCDG 2 cut(s) 247, 382
Lsp1109I GCAGC 2 cut(s) 161, 185
LweI GCATC 1 cut(s) 14
MaeI CTAG 2 cut(s) 179, 457
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 2 cut(s) 266, 407
MalI GATC 2 cut(s) 70, 429
MboI GATC 2 cut(s) 68, 427
MboII GAAGA 1 cut(s) 86
MluCI AATT 1 cut(s) 212
MnlI CCTC 2 cut(s) 83, 455
MroXI GAANNNNTTC 1 cut(s) 133
MseI TTAA 2 cut(s) 86, 285
MslI CAYNNNNRTG 2 cut(s) 285, 416
MspA1I CMGCKG 2 cut(s) 17, 66
MspI CCGG 1 cut(s) 369
Mva1269I GAATGC 1 cut(s) 133
MvnI CGCG 3 cut(s) 17, 66, 450
NdeII GATC 2 cut(s) 68, 427
NlaIII CATG 2 cut(s) 195, 421
NmeAIII GCCGAG 1 cut(s) 280
NspV TTCGAA 1 cut(s) 261
PctI GAATGC 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 54
PkrI GCNGC 3 cut(s) 65, 151, 200
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
RseI CAYNNNNRTG 2 cut(s) 285, 416
SacII CCGCGG 2 cut(s) 18, 67
SaqAI TTAA 2 cut(s) 86, 285
SatI GCNGC 3 cut(s) 64, 150, 199
Sau3AI GATC 2 cut(s) 68, 427
SetI ASST 6 cut(s) 85, 94, 180, 268, 285, 447
SfaNI GCATC 1 cut(s) 14
Sfr303I CCGCGG 2 cut(s) 18, 67
SfuI TTCGAA 1 cut(s) 261
SgrBI CCGCGG 2 cut(s) 18, 67
SmiMI CAYNNNNRTG 2 cut(s) 285, 416
Sse9I AATT 1 cut(s) 212
SsiI CCGC 6 cut(s) 15, 17, 38, 64, 66, 448
SspMI CTAG 2 cut(s) 179, 457
TaaI ACNGT 2 cut(s) 338, 352
TaiI ACGT 1 cut(s) 268
TaqI TCGA 2 cut(s) 261, 414
TasI AATT 1 cut(s) 212
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 1 cut(s) 54
Tru1I TTAA 2 cut(s) 86, 285
Tru9I TTAA 2 cut(s) 86, 285
TseI GCWGC 2 cut(s) 149, 198
TspDTI ATGAA 3 cut(s) 264, 266, 303
XapI RAATTY 1 cut(s) 212
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XmnI GAANNNNTTC 1 cut(s) 133
XspI CTAG 2 cut(s) 179, 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.