RLG00000016126

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000544
Physical Location & Seq
Reverse (-)
4064285 .. 4064926
642 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016126

Sequence Viewer

Length: 549 bp
ATGGCCGAGAAACGTTCTGAGCGTAAGAGGAAGAACAAGAAGCACAAGCGGTCTGAGCGAAAGAAAAAGTCTGATCGAAGGAGAAGGCGTGCCAGAGACGAACGTATCCAGGATACGATCGATCGCTTGGGATGGATATTCTATGAGGTCACCAACTGTAAGAATGAATTGTTGTGGTATCAATCGGCGCCTATCCTCCAGAAGTTGAGTAGGACAGAGTGCAATTGGGATGTTGCATATCGATTGTGGGCAGAGCAGAAATACCACAAGCAGATTAATCTTTCTGAAACTTGCATAAAAAACATTTATGCGTGGAGAGCCTACAATTTCAGGACTTACAGTGATAATCCCACAGATGAAGCAGAGCTAGTGCGTAATCTCATCATCCACTTCAACCAGTGCAGGATGAAGAATGTTCCCCCACCTGCAGATTTCTATGACAAACATCAGATTGGAGAAGTGGTGTTCGACCTTTTTCCTGATATTGATTCCAGCCTCTTTGATTTCATGTGCGAATGTGGAGTTTATATGGACTTCACAGCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

22.15

Weight (kDa)

9.19

Isoelectric Point (pI)

69.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 433
Acc36I ACCTGC 1 cut(s) 433
AccB1I GGYRCC 1 cut(s) 187
AciI CCGC 1 cut(s) 49
AclI AACGTT 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 188
AgsI TTSAA 1 cut(s) 394
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 1 cut(s) 367
AluI AGCT 1 cut(s) 367
Alw26I GTCTC 1 cut(s) 90
AoxI GGCC 1 cut(s) 3
AseI ATTAAT 1 cut(s) 276
AspLEI GCGC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 142
BaeI ACNNNNGTAYC 2 cut(s) 88, 121
BanI GGYRCC 1 cut(s) 187
BccI CCATC 1 cut(s) 126
BciT130I CCWGG 1 cut(s) 110
BciVI GTATCC 2 cut(s) 106, 116
BcoDI GTCTC 1 cut(s) 90
BfaI CTAG 1 cut(s) 368
BfmI CTRYAG 1 cut(s) 426
BfoI RGCGCY 1 cut(s) 191
BfuAI ACCTGC 1 cut(s) 433
BfuI GTATCC 2 cut(s) 106, 116
Bme1390I CCNGG 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 110
BpmI CTGGAG 1 cut(s) 182
Bsa29I ATCGAT 2 cut(s) 120, 241
BsaHI GRCGYC 1 cut(s) 188
BsaXI ACNNNNNCTCC 4 cut(s) 73, 103, 447, 477
Bse1I ACTGG 1 cut(s) 397
BseBI CCWGG 1 cut(s) 110
BseCI ATCGAT 2 cut(s) 120, 241
BseGI GGATG 4 cut(s) 137, 235, 384, 411
BseMII CTCAG 2 cut(s) 9, 45
BseNI ACTGG 1 cut(s) 397
BsgI GTGCAG 1 cut(s) 421
Bsh1285I CGRYCG 2 cut(s) 120, 124
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 187
BshVI ATCGAT 2 cut(s) 120, 241
BsiEI CGRYCG 2 cut(s) 120, 124
BsmAI GTCTC 1 cut(s) 90
BsmBI CGTCTC 1 cut(s) 90
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 3 cut(s) 73, 117, 121
BspACI CCGC 1 cut(s) 49
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 10, 46
BspDI ATCGAT 2 cut(s) 120, 241
BspLI GGNNCC 1 cut(s) 189
BspMAI CTGCAG 1 cut(s) 430
BspMI ACCTGC 1 cut(s) 433
BspT107I GGYRCC 1 cut(s) 187
BsrI ACTGG 1 cut(s) 397
BssMI GATC 3 cut(s) 73, 117, 121
BssNI GRCGYC 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 2 cut(s) 158, 341
BstACI GRCGYC 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 2 cut(s) 18, 54
BstEII GGTNACC 1 cut(s) 148
BstF5I GGATG 4 cut(s) 137, 235, 384, 411
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 3 cut(s) 76, 120, 124
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 3 cut(s) 73, 117, 121
BstMCI CGRYCG 2 cut(s) 120, 124
BstMWI GCNNNNNNNGC 2 cut(s) 55, 317
BstNI CCWGG 1 cut(s) 110
BstPI GGTNACC 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 426
Bsu15I ATCGAT 2 cut(s) 120, 241
BsuI GTATCC 2 cut(s) 106, 116
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 2 cut(s) 120, 241
BtsCI GGATG 4 cut(s) 137, 235, 384, 411
BtsIMutI CAGTG 2 cut(s) 346, 404
BveI ACCTGC 1 cut(s) 433
Cac8I GCNNGC 1 cut(s) 90
CfoI GCGC 1 cut(s) 190
ClaI ATCGAT 2 cut(s) 120, 241
CviAII CATG 1 cut(s) 508
CviJI RGCY 4 cut(s) 5, 320, 367, 495
CviKI_1 RGCY 4 cut(s) 5, 320, 367, 495
DdeI CTNAG 2 cut(s) 18, 54
DinI GGCGCC 1 cut(s) 189
DpnI GATC 3 cut(s) 75, 119, 123
DpnII GATC 3 cut(s) 73, 117, 121
EaeI YGGCCR 1 cut(s) 3
Eco91I GGTNACC 1 cut(s) 148
EcoO65I GGTNACC 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 108
EgeI GGCGCC 1 cut(s) 189
EheI GGCGCC 1 cut(s) 189
Esp3I CGTCTC 1 cut(s) 90
FaeI CATG 1 cut(s) 511
FaiI YATR 8 cut(s) 144, 238, 296, 309, 438, 509, 528, 530
FatI CATG 1 cut(s) 507
FokI GGATG 4 cut(s) 144, 242, 371, 418
FspBI CTAG 1 cut(s) 368
GlaI GCGC 1 cut(s) 189
GsuI CTGGAG 1 cut(s) 182
HaeII RGCGCY 1 cut(s) 191
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 190
Hin1I GRCGYC 1 cut(s) 188
Hin1II CATG 1 cut(s) 511
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HinfI GANTC 1 cut(s) 488
HphI GGTGA 1 cut(s) 142
Hpy188I TCNGA 5 cut(s) 19, 55, 73, 286, 450
Hpy188III TCNNGA 3 cut(s) 199, 331, 479
HpyAV CCTTC 2 cut(s) 72, 78
HpyCH4III ACNGT 2 cut(s) 158, 341
HpyCH4IV ACGT 2 cut(s) 13, 103
HpyCH4V TGCA 5 cut(s) 222, 236, 294, 402, 428
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 317
HpyF3I CTNAG 2 cut(s) 18, 54
HpySE526I ACGT 2 cut(s) 13, 103
Hsp92I GRCGYC 1 cut(s) 188
Hsp92II CATG 1 cut(s) 511
HspAI GCGC 1 cut(s) 188
KasI GGCGCC 1 cut(s) 187
Kzo9I GATC 3 cut(s) 73, 117, 121
MaeI CTAG 1 cut(s) 368
MaeII ACGT 2 cut(s) 13, 103
MaeIII GTNAC 1 cut(s) 148
MalI GATC 3 cut(s) 75, 119, 123
MboI GATC 3 cut(s) 73, 117, 121
MboII GAAGA 2 cut(s) 43, 421
MfeI CAATTG 1 cut(s) 223
MluCI AATT 3 cut(s) 167, 223, 325
Mly113I GGCGCC 1 cut(s) 188
MnlI CCTC 4 cut(s) 21, 139, 206, 506
MseI TTAA 1 cut(s) 276
MspR9I CCNGG 1 cut(s) 110
MunI CAATTG 1 cut(s) 223
MvaI CCWGG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 55, 317
NarI GGCGCC 1 cut(s) 188
NdeII GATC 3 cut(s) 73, 117, 121
NlaIII CATG 1 cut(s) 511
NlaIV GGNNCC 1 cut(s) 189
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 148
PaqCI CACCTGC 1 cut(s) 433
PcsI WCGNNNNNNNCGW 1 cut(s) 19
PfeI GAWTC 1 cut(s) 488
PfoI TCCNGGA 1 cut(s) 108
Ple19I CGATCG 2 cut(s) 120, 124
PluTI GGCGCC 1 cut(s) 191
PshBI ATTAAT 1 cut(s) 276
Psp1406I AACGTT 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 108
PspEI GGTNACC 1 cut(s) 148
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 189
PstI CTGCAG 1 cut(s) 430
PvuI CGATCG 2 cut(s) 120, 124
SaqAI TTAA 1 cut(s) 276
Sau3AI GATC 3 cut(s) 73, 117, 121
ScrFI CCNGG 1 cut(s) 110
SetI ASST 6 cut(s) 16, 106, 150, 369, 427, 474
SfcI CTRYAG 1 cut(s) 426
SfoI GGCGCC 1 cut(s) 189
Sse9I AATT 3 cut(s) 167, 223, 325
SsiI CCGC 1 cut(s) 49
SspDI GGCGCC 1 cut(s) 187
SspMI CTAG 1 cut(s) 368
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 158, 341
TaiI ACGT 2 cut(s) 16, 106
TaqI TCGA 4 cut(s) 76, 120, 241, 468
TasI AATT 3 cut(s) 167, 223, 325
TfiI GAWTC 1 cut(s) 488
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TscAI CASTG 2 cut(s) 346, 404
TseFI GTSAC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 4 cut(s) 180, 372, 422, 496
TspRI CASTG 2 cut(s) 346, 404
VspI ATTAAT 1 cut(s) 276
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.