Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000544

Physical Location & Seq

Genomic Coordinates Reverse (-)

14848082 .. 14850360

Gene Structure 2279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG142000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCTTTTTCTCAGGTTTGGATTAGATATGCTGTTAAGAGTCTGATTGTAACGACCAAGCGTGTGGAAGAACTATTAGAAAAGATCAGCAACAATACCATTAAGACTGAGAGTCCAATCCGTGTAGAAGAATACTTTACAGCTCTAAGCTTCTACTTCAAGCAACAGGACTCAACGAGCTTAAGCACCAAAGCCTTGTTGGCGGAGATTAAAGAGATGACTGAGAAGAAGCGGAAGGAAGATGATGTTCTTCTTGCTATTGCTGCTAGAAATAGACGACCTATTATTCCAAATTTGGAATTCGAGTACCCTGATCCGGACATCCATGAAGATCTGTATCAACTCATCAAATATTTTTGTGGAGAACTCCTTTCCGGTATCAACTACCAGAACCCATCTGCGCAACTCGCCGTTCTTCTTGAAGTTGACGGGGTTCTTGTGGATGTATATCACTTGGGTAACCACCAGACGTTCAATTGTTTAAAAAGCTTGGGCTTGACTGTGCAATTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

171

Amino Acids

19.67

Weight (kDa)

5.31

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04860 FvH4_1g04920 FvH4_1g05010 FvH4_1g07320 FvH4_5g09280 FvH4_5g09280 FvH4_5g09280
rosa_chinensis	RchiOBHm_Chr2g0088841 RchiOBHm_Chr2g0089881 RchiOBHm_Chr2g0089901 RchiOBHm_Chr2g0089911 RchiOBHm_Chr2g0089921 RchiOBHm_Chr2g0090621 RchiOBHm_Chr2g0091091 RchiOBHm_Chr5g0019481 RchiOBHm_Chr5g0019491
rosa_laevigata	RLG00000016078 RLG00000016112 RLG00000016113 RLG00000016126 RLG00000016176 RLG00000016179 RLG00000016217 RLG00000019062 RLG00000032446 RLG00000032447 RLG00000032450
rosa_multiflora	Rmu_sc0000259.1_g000018 Rmu_sc0000779.1_g000022 Rmu_sc0002515.1_g000014 Rmu_sc0002759.1_g000046 Rmu_sc0002986.1_g000072 Rmu_sc0005230.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058560 Rroxscaffold_1G00058570 Rroxscaffold_1G00074340 Rroxscaffold_2G00150150 Rroxscaffold_2G00150970 Rroxscaffold_2G00151500 Rroxscaffold_4G00332590
rosa_rugosa	Rorug01G0127100 Rorug02G0009600 Rorug05G0051100 Rorug07G0229300
rosa_samantha	Rh2AG050300 Rh2AG050400 Rh2AG055000 Rh2AG055100 Rh2AG058600 Rh2AG058900 Rh2AG062100 Rh2BG048900 Rh2BG053100 Rh2BG053900 Rh2BG057400 Rh2BG061100 Rh2CG051100 Rh2CG055100 Rh2CG056100 Rh2CG059300 Rh2CG063200 Rh2DG049400 Rh2DG050300 Rh2DG050400 Rh2DG050500 Rh2DG055300 Rh2DG061700 Rh2DG362200 Rh4AG113200 Rh5AG141500 Rh5AG142000 Rh5AG142100 Rh5BG140400 Rh5BG140500 Rh5CG152300 Rh5CG152400 Rh5CG152500 Rh5CG152600 Rh5DG141100 Rh7DG375200
rosa_wichuraiana	Rw2G004030 Rw2G004800 Rw2G005060 Rw7G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	402
AccIII	TCCGGA	1 cut(s)	316
AciI	CCGC	2 cut(s)	203, 232
AclWI	GGATC	1 cut(s)	308
AcsI	RAATTY	2 cut(s)	292, 299
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	316
AflII	CTTAAG	1 cut(s)	181
AgsI	TTSAA	3 cut(s)	160, 422, 475
AhdI	GACNNNNNGTC	1 cut(s)	111
AluBI	AGCT	4 cut(s)	143, 150, 180, 489
AluI	AGCT	4 cut(s)	143, 150, 180, 489
AlwI	GGATC	1 cut(s)	308
Aor13HI	TCCGGA	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	263
ApoI	RAATTY	2 cut(s)	292, 299
AspLEI	GCGC	1 cut(s)	403
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	1 cut(s)	403
BceAI	ACGGC	1 cut(s)	395
BfaI	CTAG	1 cut(s)	267
BfrI	CTTAAG	1 cut(s)	181
BglI	GCCNNNNNGGC	1 cut(s)	200
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
BmeRI	GACNNNNNGTC	1 cut(s)	111
BsaBI	GATNNNNATC	2 cut(s)	336, 447
BsaWI	WCCGGW	2 cut(s)	316, 374
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse8I	GATNNNNATC	2 cut(s)	336, 447
BseAI	TCCGGA	1 cut(s)	316
BseGI	GGATG	2 cut(s)	321, 448
BseJI	GATNNNNATC	2 cut(s)	336, 447
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMII	CTCAG	3 cut(s)	26, 99, 213
BseXI	GCAGC	1 cut(s)	250
BsiSI	CCGG	2 cut(s)	317, 375
BslI	CCNNNNNNNGG	1 cut(s)	316
Bsp13I	TCCGGA	1 cut(s)	316
Bsp143I	GATC	3 cut(s)	84, 313, 331
BspACI	CCGC	2 cut(s)	203, 232
BspCNI	CTCAG	3 cut(s)	25, 100, 214
BspEI	TCCGGA	1 cut(s)	316
BspPI	GGATC	1 cut(s)	308
BspTI	CTTAAG	1 cut(s)	181
BssMI	GATC	3 cut(s)	84, 313, 331
Bst4CI	ACNGT	1 cut(s)	502
BstAFI	CTTAAG	1 cut(s)	181
BstDEI	CTNAG	4 cut(s)	12, 108, 146, 222
BstEII	GGTNACC	1 cut(s)	458
BstF5I	GGATG	2 cut(s)	321, 448
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	3 cut(s)	87, 316, 334
BstMBI	GATC	3 cut(s)	84, 313, 331
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 263, 407
BstPI	GGTNACC	1 cut(s)	458
BstV1I	GCAGC	1 cut(s)	250
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	331
BtsCI	GGATG	2 cut(s)	321, 448
CfoI	GCGC	1 cut(s)	403
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	7 cut(s)	5, 143, 150, 180, 194, 489, 495
CviKI_1	RGCY	7 cut(s)	5, 143, 150, 180, 194, 489, 495
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	4 cut(s)	12, 108, 146, 222
DpnI	GATC	3 cut(s)	86, 315, 333
DpnII	GATC	3 cut(s)	84, 313, 331
DraI	TTTAAA	1 cut(s)	483
DriI	GACNNNNNGTC	1 cut(s)	111
Eam1105I	GACNNNNNGTC	1 cut(s)	111
EciI	GGCGGA	1 cut(s)	218
Eco91I	GGTNACC	1 cut(s)	458
EcoO65I	GGTNACC	1 cut(s)	458
EcoRI	GAATTC	1 cut(s)	299
FaeI	CATG	1 cut(s)	329
FaiI	YATR	3 cut(s)	30, 327, 448
FatI	CATG	1 cut(s)	325
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	2 cut(s)	308, 455
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	1 cut(s)	267
FspI	TGCGCA	1 cut(s)	402
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	1 cut(s)	264
HapII	CCGG	2 cut(s)	317, 375
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	1 cut(s)	329
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	2 cut(s)	148, 487
HinfI	GANTC	3 cut(s)	40, 112, 170
HpaII	CCGG	2 cut(s)	317, 375
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	2 cut(s)	317, 419
Hpy8I	GTNNAC	1 cut(s)	427
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	1 cut(s)	505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 263, 407
HpyF3I	CTNAG	4 cut(s)	12, 108, 146, 222
HpySE526I	ACGT	1 cut(s)	470
Hsp92II	CATG	1 cut(s)	329
HspAI	GCGC	1 cut(s)	401
Kpn2I	TCCGGA	1 cut(s)	316
Kzo9I	GATC	3 cut(s)	84, 313, 331
LpnPI	CCDG	6 cut(s)	152, 324, 330, 388, 401, 479
Lsp1109I	GCAGC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	470
MaeIII	GTNAC	2 cut(s)	49, 458
MalI	GATC	3 cut(s)	86, 315, 333
MboI	GATC	3 cut(s)	84, 313, 331
MboII	GAAGA	7 cut(s)	80, 140, 238, 242, 251, 341, 407
MfeI	CAATTG	2 cut(s)	475, 506
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	4 cut(s)	292, 299, 475, 506
MlyI	GAGTC	3 cut(s)	49, 121, 164
MroI	TCCGGA	1 cut(s)	316
MseI	TTAA	5 cut(s)	36, 102, 182, 210, 482
MspCI	CTTAAG	1 cut(s)	181
MspI	CCGG	2 cut(s)	317, 375
MunI	CAATTG	2 cut(s)	475, 506
MwoI	GCNNNNNNNGC	3 cut(s)	200, 263, 407
NdeII	GATC	3 cut(s)	84, 313, 331
NlaIII	CATG	1 cut(s)	329
NsbI	TGCGCA	1 cut(s)	402
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	3 cut(s)	48, 120, 164
PpsI	GAGTC	3 cut(s)	48, 120, 164
PspEI	GGTNACC	1 cut(s)	458
PsuI	RGATCY	1 cut(s)	331
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SaqAI	TTAA	5 cut(s)	36, 102, 182, 210, 482
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	3 cut(s)	84, 313, 331
SchI	GAGTC	3 cut(s)	49, 121, 164
SetI	ASST	7 cut(s)	18, 145, 152, 182, 283, 473, 491
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	4 cut(s)	292, 299, 475, 506
SsiI	CCGC	2 cut(s)	203, 232
SspI	AATATT	1 cut(s)	353
SspMI	CTAG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	502
TaiI	ACGT	1 cut(s)	473
TaqI	TCGA	1 cut(s)	303
TasI	AATT	4 cut(s)	292, 299, 475, 506
Tru1I	TTAA	5 cut(s)	36, 102, 182, 210, 482
Tru9I	TTAA	5 cut(s)	36, 102, 182, 210, 482
TseI	GCWGC	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	342
TspGWI	ACGGA	1 cut(s)	110
Vha464I	CTTAAG	1 cut(s)	181
XapI	RAATTY	2 cut(s)	292, 299
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.