RchiOBHm_Chr2g0090621

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000544
Physical Location & Seq
Reverse (-)
4387312 .. 4389251
1940 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46586

Sequence Viewer

Length: 669 bp
ATGGCTGTACCTCCCTTGGATACATACACTGTCAAAGTCAGGGATAACAAAGCCTATATTCCGAGGGAAGGCTCTCGAAACGATTCTTGGAACTACGCAATTCGGTATCGGGATTTCATTCTTTCTGTTTATGGCCCTGCGGCAGATAATAGGCTTCTTGAGGACTTTTGTAGAAAGCTGAGTGACCCAACCCTCACACTGCTCAGATTTCAGAATTTGTATTTCCATAAACTTTTACAAAGCCGGGAGGAAATCAATGACTTCCCAGTAGTGGCGGTTGAAAACCTCCGGCTTAGGAAGTTTGATTACAATCGGAGAGAGTGCAATTGGGATGTAGCTTATCGATTTTGGGCAGAGGAGAAATACCACAGGGAGATTAATCTTTTTGAAACTTGCATAGAAAACATTTATGTGTGGAGAGCCTACAATTACAGAATTTACGGTGATAATCCCACAGATGAAGCCGAGCTAGTGCGTAATCTCATCATCCACTTCAACCAGTGCAGGATGAAGGATGTTCCCCCACCTGCAGATTTCTTTGATAAAAATCAAATTGGAGAAGTGGTATTTGACCTCTTTCCTAATATTGGTTCCAGCCTCTTTGATTTCATGTACGAACGTGGAGTTTATATGGACTTCACAGCACTTCGTACATTTTACAGAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

26.85

Weight (kDa)

5.55

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 535
Acc36I ACCTGC 1 cut(s) 535
AciI CCGC 2 cut(s) 140, 275
AcsI RAATTY 2 cut(s) 214, 435
AfaI GTAC 3 cut(s) 9, 614, 652
AfiI CCNNNNNNNGG 3 cut(s) 68, 271, 587
AgsI TTSAA 3 cut(s) 281, 389, 496
AjuI GAANNNNNNNTTGG 2 cut(s) 70, 102
AluBI AGCT 3 cut(s) 178, 338, 469
AluI AGCT 3 cut(s) 178, 338, 469
AoxI GGCC 1 cut(s) 133
ApoI RAATTY 2 cut(s) 214, 435
AseI ATTAAT 1 cut(s) 378
Asp700I GAANNNNTTC 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 134
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 455
BarI GAAGNNNNNNTAC 2 cut(s) 290, 322
BciVI GTATCC 1 cut(s) 13
BcnI CCSGG 1 cut(s) 245
BfaI CTAG 1 cut(s) 470
BfmI CTRYAG 1 cut(s) 528
BfuAI ACCTGC 1 cut(s) 535
BfuI GTATCC 1 cut(s) 13
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 592
BmrFI CCNGG 1 cut(s) 245
BmrI ACTGGG 1 cut(s) 260
BmuI ACTGGG 1 cut(s) 260
Bpu10I CCTNAGC 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 245
Bsa29I ATCGAT 1 cut(s) 343
BsaBI GATNNNNATC 2 cut(s) 309, 546
BsaJI CCNNGG 2 cut(s) 15, 62
BsaXI ACNNNNNCTCC 2 cut(s) 549, 579
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 271, 587
Bse1I ACTGG 2 cut(s) 266, 499
Bse8I GATNNNNATC 2 cut(s) 309, 546
BseCI ATCGAT 1 cut(s) 343
BseDI CCNNGG 2 cut(s) 15, 62
BseGI GGATG 4 cut(s) 337, 486, 513, 520
BseJI GATNNNNATC 2 cut(s) 309, 546
BseLI CCNNNNNNNGG 3 cut(s) 68, 271, 587
BseMII CTCAG 2 cut(s) 170, 217
BseNI ACTGG 2 cut(s) 266, 499
BseRI GAGGAG 1 cut(s) 371
BsgI GTGCAG 1 cut(s) 523
BshFI GGCC 1 cut(s) 135
BshVI ATCGAT 1 cut(s) 343
BsiSI CCGG 2 cut(s) 244, 289
BslI CCNNNNNNNGG 3 cut(s) 68, 271, 587
BsnI GGCC 1 cut(s) 135
BspACI CCGC 2 cut(s) 140, 275
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 2 cut(s) 171, 216
BspDI ATCGAT 1 cut(s) 343
BspLI GGNNCC 1 cut(s) 592
BspMAI CTGCAG 1 cut(s) 532
BspMI ACCTGC 1 cut(s) 535
BsrI ACTGG 2 cut(s) 266, 499
BssECI CCNNGG 2 cut(s) 15, 62
BssT1I CCWWGG 1 cut(s) 15
Bst4CI ACNGT 2 cut(s) 31, 443
BstDEI CTNAG 3 cut(s) 179, 203, 293
BstF5I GGATG 4 cut(s) 337, 486, 513, 520
BstSCI CCNGG 1 cut(s) 243
BstSFI CTRYAG 1 cut(s) 528
Bsu15I ATCGAT 1 cut(s) 343
BsuI GTATCC 1 cut(s) 13
BsuRI GGCC 1 cut(s) 135
BsuTUI ATCGAT 1 cut(s) 343
BtsCI GGATG 4 cut(s) 337, 486, 513, 520
BtsI GCAGTG 1 cut(s) 197
BtsIMutI CAGTG 3 cut(s) 27, 197, 506
BveI ACCTGC 1 cut(s) 535
Cfr13I GGNCC 1 cut(s) 134
ClaI ATCGAT 1 cut(s) 343
Csp6I GTAC 3 cut(s) 8, 613, 651
CviAII CATG 1 cut(s) 610
CviQI GTAC 3 cut(s) 8, 613, 651
DdeI CTNAG 3 cut(s) 179, 203, 293
Eco130I CCWWGG 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 1 cut(s) 613
FaiI YATR 9 cut(s) 25, 57, 132, 228, 398, 411, 611, 630, 632
FatI CATG 1 cut(s) 609
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 4 cut(s) 344, 473, 520, 527
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 1 cut(s) 470
GluI GCNGC 1 cut(s) 141
HaeIII GGCC 1 cut(s) 135
HapII CCGG 2 cut(s) 244, 289
Hin1II CATG 1 cut(s) 613
HinfI GANTC 1 cut(s) 83
HpaII CCGG 2 cut(s) 244, 289
HphI GGTGA 1 cut(s) 455
Hpy188I TCNGA 4 cut(s) 63, 206, 213, 315
Hpy188III TCNNGA 3 cut(s) 75, 110, 158
HpyAV CCTTC 2 cut(s) 62, 505
HpyCH4III ACNGT 2 cut(s) 31, 443
HpyCH4IV ACGT 1 cut(s) 619
HpyCH4V TGCA 4 cut(s) 324, 396, 504, 530
HpyF3I CTNAG 3 cut(s) 179, 203, 293
HpySE526I ACGT 1 cut(s) 619
Hsp92II CATG 1 cut(s) 613
MaeI CTAG 1 cut(s) 470
MaeII ACGT 1 cut(s) 619
MaeIII GTNAC 1 cut(s) 182
MfeI CAATTG 1 cut(s) 325
MluCI AATT 6 cut(s) 99, 214, 325, 427, 435, 552
MnlI CCTC 9 cut(s) 21, 57, 154, 203, 241, 296, 349, 584, 608
MroXI GAANNNNTTC 1 cut(s) 82
MseI TTAA 1 cut(s) 378
MslI CAYNNNNRTG 1 cut(s) 410
MspI CCGG 2 cut(s) 244, 289
MspR9I CCNGG 1 cut(s) 245
MunI CAATTG 1 cut(s) 325
NciI CCSGG 1 cut(s) 245
NlaIII CATG 1 cut(s) 613
NlaIV GGNNCC 1 cut(s) 592
NmeAIII GCCGAG 1 cut(s) 490
NmuCI GTSAC 1 cut(s) 182
PaqCI CACCTGC 1 cut(s) 535
PdmI GAANNNNTTC 1 cut(s) 82
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 1 cut(s) 142
PshBI ATTAAT 1 cut(s) 378
PspN4I GGNNCC 1 cut(s) 592
PspPI GGNCC 1 cut(s) 134
PstI CTGCAG 1 cut(s) 532
RsaI GTAC 3 cut(s) 9, 614, 652
RsaNI GTAC 3 cut(s) 8, 613, 651
RseI CAYNNNNRTG 1 cut(s) 410
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 1 cut(s) 141
Sau96I GGNCC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 245
SetI ASST 8 cut(s) 13, 180, 288, 340, 471, 529, 576, 622
SfcI CTRYAG 1 cut(s) 528
SmiMI CAYNNNNRTG 1 cut(s) 410
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 6 cut(s) 99, 214, 325, 427, 435, 552
SsiI CCGC 2 cut(s) 140, 275
SspI AATATT 1 cut(s) 586
SspMI CTAG 1 cut(s) 470
StyD4I CCNGG 1 cut(s) 243
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 2 cut(s) 31, 443
TaiI ACGT 1 cut(s) 622
TaqI TCGA 2 cut(s) 76, 343
TasI AATT 6 cut(s) 99, 214, 325, 427, 435, 552
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TscAI CASTG 3 cut(s) 34, 204, 506
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 4 cut(s) 106, 474, 524, 598
TspRI CASTG 3 cut(s) 34, 204, 506
VspI ATTAAT 1 cut(s) 378
XapI RAATTY 2 cut(s) 214, 435
XmnI GAANNNNTTC 1 cut(s) 82
XspI CTAG 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.