Rh5AG141500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000544
Physical Location & Seq
Reverse (-)
14677022 .. 14678622
1601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG141500.1

Sequence Viewer

Length: 861 bp
ATGGTGAAGCGGAAGCGTCACACCGGCGGCAAGCCGGTTAGATTTTTCAAGGATGTGCTGGGAAGGAAATCTTATTATAGATTGTACAATTCGAATGGCGATTTCCTATGCTATGTAGCAAAGCCTTTGCTACAGAAGCTGTCCAGAGACGTGCTGAATGCCCTCGTATATAGGTGGAAGCATAACCTCGGATGTAAGAAGTTGACGAGGTATAATGTTAGGGTGCGTGACAATCAAGCCTACCTACCTCAGGAAGGCTGTTCCGCTGACAGGGAGGATTATCCTAAGATATATCTGGAGTTTCTCCAAGATATATTCGACCCTGTTGCGGATGTCACAAGGGCCTGGGACGATTTGTGCAACAAGCTCTCTGACCCCGAGCTATCTCTGGAGAAATTTCGCAACCTTTTTTTCCACCTGTTTTTCCAGATGGAGGAAGAACTATGTGATTTCCCTGCCGTGGCAGTGTGGAATCTGCGGAACATAAAATTCAACCATGAAGGCCTGAAAGAAAACTGGACTGATGCTTATACCCGATGGGATGCTTTGCATCCCCGGGAGGGTGCAATAAACTTGATTCGGACCTGCAGGGAGAATGATTACTTCATGAGAGCTTACAAGTTCAAGCAATATCATAATGATGCTGTCAAGGAAGCAGAGCTGGTTAGAAATGGCATTACGCACTTTAACGAGAATGTAATGAAAGACGTGCCCCCTCCTGATGATTTCTTCAACAAACGCCAAATAGGAGAGGTCGTTCTTGATCTCTTCCCAGATGTCTCCTTCAGACTGTTCGATTTTATGTGGGACAATGATGTGAATATGGACTTCACCATGTCCCGCACATGTTTCAGCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

34.25

Weight (kDa)

7.04

Isoelectric Point (pI)

33.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 593
AciI CCGC 6 cut(s) 10, 27, 264, 329, 478, 841
AcsI RAATTY 2 cut(s) 395, 488
AcuI CTGAAG 1 cut(s) 769
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 7 cut(s) 250, 254, 270, 328, 433, 460, 560
AflIII ACRYGT 1 cut(s) 845
AgsI TTSAA 4 cut(s) 49, 493, 625, 733
AjiI CACGTC 2 cut(s) 151, 709
AjnI CCWGG 1 cut(s) 344
AloI GAACNNNNNNTCC 2 cut(s) 741, 773
AluBI AGCT 5 cut(s) 139, 367, 382, 614, 661
AluI AGCT 5 cut(s) 139, 367, 382, 614, 661
Alw26I GTCTC 2 cut(s) 141, 784
AlwNI CAGNNNCTG 1 cut(s) 139
Ama87I CYCGRG 2 cut(s) 377, 555
AoxI GGCC 2 cut(s) 342, 502
ApoI RAATTY 2 cut(s) 395, 488
AspS9I GGNCC 2 cut(s) 342, 582
AsuC2I CCSGG 2 cut(s) 556, 557
AsuHPI GGTGA 2 cut(s) 16, 823
AsuII TTCGAA 1 cut(s) 92
AvaI CYCGRG 2 cut(s) 377, 555
AvaII GGWCC 1 cut(s) 582
AxyI CCTNAGG 1 cut(s) 249
BaeGI GKGCMC 1 cut(s) 714
BccI CCATC 2 cut(s) 424, 531
BceAI ACGGC 1 cut(s) 443
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciT130I CCWGG 1 cut(s) 346
BcnI CCSGG 2 cut(s) 556, 557
BcoDI GTCTC 2 cut(s) 141, 784
BfmI CTRYAG 2 cut(s) 131, 586
BfuAI ACCTGC 1 cut(s) 593
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
Bme1390I CCNGG 3 cut(s) 346, 556, 557
Bme18I GGWCC 1 cut(s) 582
BmeT110I CYCGRG 2 cut(s) 377, 555
BmgBI CACGTC 2 cut(s) 151, 709
BmgT120I GGNCC 2 cut(s) 342, 582
BmrFI CCNGG 3 cut(s) 346, 556, 557
BmsI GCATC 4 cut(s) 514, 532, 559, 631
BpmI CTGGAG 2 cut(s) 317, 410
Bpu14I TTCGAA 1 cut(s) 92
BpuMI CCSGG 2 cut(s) 556, 557
BsaJI CCNNGG 5 cut(s) 187, 345, 459, 554, 555
BsaXI ACNNNNNCTCC 2 cut(s) 741, 771
Bsc4I CCNNNNNNNGG 7 cut(s) 250, 254, 270, 328, 433, 460, 560
Bse118I RCCGGY 2 cut(s) 23, 34
Bse1I ACTGG 1 cut(s) 521
Bse21I CCTNAGG 1 cut(s) 249
BseBI CCWGG 1 cut(s) 346
BseDI CCNNGG 5 cut(s) 187, 345, 459, 554, 555
BseGI GGATG 5 cut(s) 58, 197, 337, 547, 550
BseLI CCNNNNNNNGG 7 cut(s) 250, 254, 270, 328, 433, 460, 560
BseMII CTCAG 1 cut(s) 263
BseNI ACTGG 1 cut(s) 521
BseSI GKGCMC 1 cut(s) 714
BseYI CCCAGC 1 cut(s) 58
BshFI GGCC 2 cut(s) 344, 504
BsiHKCI CYCGRG 2 cut(s) 377, 555
BsiSI CCGG 3 cut(s) 24, 35, 556
BslFI GGGAC 3 cut(s) 362, 821, 823
BslI CCNNNNNNNGG 7 cut(s) 250, 254, 270, 328, 433, 460, 560
BsmAI GTCTC 2 cut(s) 141, 784
BsmBI CGTCTC 1 cut(s) 141
BsmFI GGGAC 3 cut(s) 362, 821, 823
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 2 cut(s) 344, 504
BsoBI CYCGRG 2 cut(s) 377, 555
Bsp119I TTCGAA 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 714
Bsp1407I TGTACA 1 cut(s) 84
Bsp143I GATC 1 cut(s) 763
BspACI CCGC 6 cut(s) 10, 27, 264, 329, 478, 841
BspANI GGCC 2 cut(s) 344, 504
BspCNI CTCAG 1 cut(s) 262
BspHI TCATGA 1 cut(s) 606
BspMAI CTGCAG 1 cut(s) 590
BspMI ACCTGC 1 cut(s) 593
BspT104I TTCGAA 1 cut(s) 92
BsrFI RCCGGY 2 cut(s) 23, 34
BsrGI TGTACA 1 cut(s) 84
BsrI ACTGG 1 cut(s) 521
BssAI RCCGGY 2 cut(s) 23, 34
BssECI CCNNGG 5 cut(s) 187, 345, 459, 554, 555
BssMI GATC 1 cut(s) 763
Bst2UI CCWGG 1 cut(s) 346
Bst4CI ACNGT 1 cut(s) 792
Bst6I CTCTTC 1 cut(s) 773
BstAUI TGTACA 1 cut(s) 84
BstBI TTCGAA 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 249, 285
BstDSI CCRYGG 1 cut(s) 459
BstENI CCTNNNNNAGG 2 cut(s) 248, 252
BstF5I GGATG 5 cut(s) 58, 197, 337, 547, 550
BstKTI GATC 1 cut(s) 766
BstMAI GTCTC 2 cut(s) 141, 784
BstMBI GATC 1 cut(s) 763
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstNI CCWGG 1 cut(s) 346
BstNSI RCATGY 1 cut(s) 849
BstSCI CCNGG 3 cut(s) 344, 554, 555
BstSFI CTRYAG 2 cut(s) 131, 586
BstSLI GKGCMC 1 cut(s) 714
Bsu36I CCTNAGG 1 cut(s) 249
BsuRI GGCC 2 cut(s) 344, 504
BtgI CCRYGG 1 cut(s) 459
BtrI CACGTC 2 cut(s) 151, 709
BtsCI GGATG 5 cut(s) 58, 197, 337, 547, 550
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 1 cut(s) 471
BveI ACCTGC 1 cut(s) 593
Cac8I GCNNGC 1 cut(s) 32
CaiI CAGNNNCTG 1 cut(s) 139
CciI TCATGA 1 cut(s) 606
Cfr10I RCCGGY 2 cut(s) 23, 34
Cfr13I GGNCC 2 cut(s) 342, 582
Cfr9I CCCGGG 1 cut(s) 555
CseI GACGC 1 cut(s) 5
Csp6I GTAC 1 cut(s) 85
CviAII CATG 4 cut(s) 497, 607, 835, 846
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 2 cut(s) 249, 285
DpnI GATC 1 cut(s) 765
DpnII GATC 1 cut(s) 763
Eam1104I CTCTTC 1 cut(s) 773
EarI CTCTTC 1 cut(s) 773
Eco147I AGGCCT 1 cut(s) 504
Eco47I GGWCC 1 cut(s) 582
Eco57I CTGAAG 1 cut(s) 769
Eco81I CCTNAGG 1 cut(s) 249
Eco88I CYCGRG 2 cut(s) 377, 555
EcoNI CCTNNNNNAGG 2 cut(s) 248, 252
EcoO109I RGGNCCY 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 344
Esp3I CGTCTC 1 cut(s) 141
FaeI CATG 4 cut(s) 500, 610, 838, 849
FalI AAGNNNNNCTT 2 cut(s) 55, 87
FaqI GGGAC 3 cut(s) 362, 821, 823
FatI CATG 4 cut(s) 496, 606, 834, 845
FauI CCCGC 1 cut(s) 848
Fnu4HI GCNGC 1 cut(s) 28
FokI GGATG 5 cut(s) 65, 204, 344, 537, 554
Fsp4HI GCNGC 1 cut(s) 28
GluI GCNGC 1 cut(s) 28
GsaI CCCAGC 1 cut(s) 62
GsuI CTGGAG 2 cut(s) 317, 410
HaeIII GGCC 2 cut(s) 344, 504
HapII CCGG 3 cut(s) 24, 35, 556
HgaI GACGC 1 cut(s) 5
Hin1II CATG 4 cut(s) 500, 610, 838, 849
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HinfI GANTC 2 cut(s) 472, 577
HpaII CCGG 3 cut(s) 24, 35, 556
HphI GGTGA 2 cut(s) 16, 823
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 4 cut(s) 191, 373, 582, 788
Hpy188III TCNNGA 8 cut(s) 144, 251, 296, 389, 427, 607, 719, 761
Hpy8I GTNNAC 1 cut(s) 204
HpyAV CCTTC 4 cut(s) 57, 248, 494, 793
HpyCH4III ACNGT 1 cut(s) 792
HpyCH4IV ACGT 2 cut(s) 150, 708
HpyCH4V TGCA 4 cut(s) 360, 550, 566, 588
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
HpyF3I CTNAG 2 cut(s) 249, 285
HpySE526I ACGT 2 cut(s) 150, 708
Hsp92II CATG 4 cut(s) 500, 610, 838, 849
Kzo9I GATC 1 cut(s) 763
LweI GCATC 4 cut(s) 514, 532, 559, 631
MaeII ACGT 2 cut(s) 150, 708
MaeIII GTNAC 3 cut(s) 17, 227, 334
MalI GATC 1 cut(s) 765
MboI GATC 1 cut(s) 763
MboII GAAGA 3 cut(s) 449, 721, 760
MhlI GDGCHC 1 cut(s) 714
MluCI AATT 3 cut(s) 88, 395, 488
MnlI CCTC 9 cut(s) 173, 197, 201, 258, 268, 427, 553, 726, 745
MseI TTAA 1 cut(s) 687
MslI CAYNNNNRTG 1 cut(s) 639
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 3 cut(s) 24, 35, 556
MspR9I CCNGG 3 cut(s) 346, 556, 557
Mva1269I GAATGC 1 cut(s) 163
MvaI CCWGG 1 cut(s) 346
MwoI GCNNNNNNNGC 1 cut(s) 136
NciI CCSGG 2 cut(s) 556, 557
NdeII GATC 1 cut(s) 763
NlaIII CATG 4 cut(s) 500, 610, 838, 849
NmuCI GTSAC 3 cut(s) 17, 227, 334
NspI RCATGY 1 cut(s) 849
NspV TTCGAA 1 cut(s) 92
PagI TCATGA 1 cut(s) 606
PceI AGGCCT 1 cut(s) 504
PciI ACATGT 1 cut(s) 845
PctI GAATGC 1 cut(s) 163
PfeI GAWTC 2 cut(s) 472, 577
PkrI GCNGC 1 cut(s) 29
PscI ACATGT 1 cut(s) 845
Psp6I CCWGG 1 cut(s) 344
PspFI CCCAGC 1 cut(s) 58
PspGI CCWGG 1 cut(s) 344
PspPI GGNCC 2 cut(s) 342, 582
PstI CTGCAG 1 cut(s) 590
PstNI CAGNNNCTG 1 cut(s) 139
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 1 cut(s) 639
SaqAI TTAA 1 cut(s) 687
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 1 cut(s) 763
Sau96I GGNCC 2 cut(s) 342, 582
SbfI CCTGCAGG 1 cut(s) 590
ScrFI CCNGG 3 cut(s) 346, 556, 557
SdaI CCTGCAGG 1 cut(s) 590
SduI GDGCHC 1 cut(s) 714
SfaNI GCATC 4 cut(s) 514, 532, 559, 631
SfcI CTRYAG 2 cut(s) 131, 586
SfuI TTCGAA 1 cut(s) 92
SgrAI CRCCGGYG 1 cut(s) 23
SinI GGWCC 1 cut(s) 582
SmaI CCCGGG 1 cut(s) 557
SmiMI CAYNNNNRTG 1 cut(s) 639
Sse8387I CCTGCAGG 1 cut(s) 590
Sse9I AATT 3 cut(s) 88, 395, 488
SseBI AGGCCT 1 cut(s) 504
SsiI CCGC 6 cut(s) 10, 27, 264, 329, 478, 841
StuI AGGCCT 1 cut(s) 504
StyD4I CCNGG 3 cut(s) 344, 554, 555
TaaI ACNGT 1 cut(s) 792
TaiI ACGT 2 cut(s) 153, 711
TaqI TCGA 3 cut(s) 92, 318, 795
TasI AATT 3 cut(s) 88, 395, 488
TatI WGTACW 1 cut(s) 84
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 2 cut(s) 472, 577
Tru1I TTAA 1 cut(s) 687
Tru9I TTAA 1 cut(s) 687
TscAI CASTG 1 cut(s) 471
TseFI GTSAC 3 cut(s) 17, 227, 334
Tsp45I GTSAC 3 cut(s) 17, 227, 334
TspDTI ATGAA 3 cut(s) 513, 595, 716
TspMI CCCGGG 1 cut(s) 555
TspRI CASTG 1 cut(s) 471
VpaK11BI GGWCC 1 cut(s) 582
XagI CCTNNNNNAGG 2 cut(s) 248, 252
XapI RAATTY 2 cut(s) 395, 488
XceI RCATGY 1 cut(s) 849
XmaI CCCGGG 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.