Rh5CG152400

Paired amphipathic helix protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
14141390 .. 14142068
679 bp
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UTR
Exon/CDS
Intron
Rh5CG152400.1

Sequence Viewer

Length: 333 bp
ATGACCAAGCGTGTGGAAGAACTATTAGAAAAGATCAACAACAATACCATTAAGACTGAAAGTCCAATCCGGATAGAAGAATACTTCACAGCTCTAAGGTGCGTTGAGCTATTATATGGTGACCACGGGCTTGATGTTATGGGTGTGTTGAGGAAAAAGGCTCCACTAGCTTTGCCTGTTATATTAACGCGCTTGAAGCAAAAGCAAGAAGAGTGGGCAAGGTGTCGCTCTGACTTTAACAAAATCTGGGGTGATATATATATGCGAAAAACTATCACAAGTCACTTGATCATCATAGCTTCTACTTCAAGCAATAGGACTCAAAGAGCTTAA

Protein Analysis

110

Amino Acids

12.82

Weight (kDa)

9.59

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 190
AccIII TCCGGA 1 cut(s) 69
AgsI TTSAA 2 cut(s) 196, 309
AhdI GACNNNNNGTC 1 cut(s) 60
AluBI AGCT 5 cut(s) 92, 109, 170, 299, 329
AluI AGCT 5 cut(s) 92, 109, 170, 299, 329
Aor13HI TCCGGA 1 cut(s) 69
AspLEI GCGC 1 cut(s) 192
AsuHPI GGTGA 2 cut(s) 131, 263
BclI TGATCA 1 cut(s) 288
BfaI CTAG 1 cut(s) 167
BmeRI GACNNNNNGTC 1 cut(s) 60
BmiI GGNNCC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 124
BsaWI WCCGGW 1 cut(s) 69
BseAI TCCGGA 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 124
Bsh1236I CGCG 1 cut(s) 190
BsiSI CCGG 1 cut(s) 70
Bsp13I TCCGGA 1 cut(s) 69
Bsp143I GATC 2 cut(s) 33, 288
BspEI TCCGGA 1 cut(s) 69
BspFNI CGCG 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 2 cut(s) 33, 288
Bst6I CTCTTC 1 cut(s) 204
BstDEI CTNAG 1 cut(s) 95
BstDSI CCRYGG 1 cut(s) 124
BstEII GGTNACC 1 cut(s) 119
BstFNI CGCG 1 cut(s) 190
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 2 cut(s) 36, 291
BstMBI GATC 2 cut(s) 33, 288
BstMWI GCNNNNNNNGC 2 cut(s) 167, 196
BstPI GGTNACC 1 cut(s) 119
BstUI CGCG 1 cut(s) 190
BstXI CCANNNNNNTGG 1 cut(s) 13
BtgI CCRYGG 1 cut(s) 124
CfoI GCGC 1 cut(s) 192
CspCI CAANNNNNGTGG 4 cut(s) 153, 188, 194, 229
CviJI RGCY 7 cut(s) 92, 109, 130, 161, 170, 299, 329
CviKI_1 RGCY 7 cut(s) 92, 109, 130, 161, 170, 299, 329
DdeI CTNAG 1 cut(s) 95
DpnI GATC 2 cut(s) 35, 290
DpnII GATC 2 cut(s) 33, 288
DriI GACNNNNNGTC 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 204
Eam1105I GACNNNNNGTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 204
Eco91I GGTNACC 1 cut(s) 119
EcoO65I GGTNACC 1 cut(s) 119
FaiI YATR 9 cut(s) 115, 117, 140, 182, 257, 259, 261, 263, 296
FbaI TGATCA 1 cut(s) 288
FspBI CTAG 1 cut(s) 167
GlaI GCGC 1 cut(s) 191
HapII CCGG 1 cut(s) 70
HhaI GCGC 1 cut(s) 192
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HinfI GANTC 1 cut(s) 319
HpaII CCGG 1 cut(s) 70
HphI GGTGA 2 cut(s) 131, 263
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 196
HpyF3I CTNAG 1 cut(s) 95
HspAI GCGC 1 cut(s) 190
Kpn2I TCCGGA 1 cut(s) 69
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 2 cut(s) 33, 288
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 3 cut(s) 83, 189, 232
MaeI CTAG 1 cut(s) 167
MaeIII GTNAC 2 cut(s) 119, 281
MalI GATC 2 cut(s) 35, 290
MboI GATC 2 cut(s) 33, 288
MboII GAAGA 3 cut(s) 29, 89, 221
MlyI GAGTC 1 cut(s) 313
MnlI CCTC 1 cut(s) 144
MroI TCCGGA 1 cut(s) 69
MseI TTAA 4 cut(s) 51, 185, 237, 331
MspI CCGG 1 cut(s) 70
MvnI CGCG 1 cut(s) 190
MwoI GCNNNNNNNGC 2 cut(s) 167, 196
NdeII GATC 2 cut(s) 33, 288
NlaIV GGNNCC 1 cut(s) 162
NmuCI GTSAC 2 cut(s) 119, 281
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
PspEI GGTNACC 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 162
SaqAI TTAA 4 cut(s) 51, 185, 237, 331
Sau3AI GATC 2 cut(s) 33, 288
SchI GAGTC 1 cut(s) 313
SetI ASST 7 cut(s) 94, 101, 111, 172, 224, 301, 331
SspMI CTAG 1 cut(s) 167
Tru1I TTAA 4 cut(s) 51, 185, 237, 331
Tru9I TTAA 4 cut(s) 51, 185, 237, 331
TseFI GTSAC 2 cut(s) 119, 281
Tsp45I GTSAC 2 cut(s) 119, 281
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.