Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000544

Physical Location & Seq

Genomic Coordinates Reverse (-)

4750729 .. 4751672

Gene Structure 944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG058900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAGAACAACGAATCTGTGCCAAATCGCGTTGTGGGCCCTGCCCAGGATGACCCATGTGCTATATGCTCAAAGCTGTTTCGATTCAGGGACATCGTATCTGTGGTAGGGGAGGAGAAGCACATATTTCATTTTGATTGCTACTGCTATGGTGTGGAAGTGACGCAATTGCATGATGACGACGACCATGGAAGAACAGGGACATCAGCCCGTTGCCCTCTCTGCAGAGAAGAAGTCAAGTATGGAGAATATCTTACTTATTTACATCTCGAGGAGGGTTTAACACGGCTCCGCCTCGACCAGTATCCACTTCCACCACCACCACCGCGGCGTCTCCCACCAGTCCCTGCCGGAGATCAGCCTCCACCACCTCCACCTCCACCTCCACCTCCACCTCCTCCCCCGCCGCCGCCTGATGGAGACCAGGATGCTGACATGTTTGAAGATGCCTTTACAGGGCCAGCCGGGGCGACAACCCAACAACATCTTCCCACACGTTGGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.71

Weight (kDa)

4.74

Isoelectric Point (pI)

59.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04860 FvH4_1g04920 FvH4_1g05010 FvH4_1g07320 FvH4_5g09280 FvH4_5g09280 FvH4_5g09280
rosa_chinensis	RchiOBHm_Chr2g0088841 RchiOBHm_Chr2g0089881 RchiOBHm_Chr2g0089901 RchiOBHm_Chr2g0089911 RchiOBHm_Chr2g0089921 RchiOBHm_Chr2g0090621 RchiOBHm_Chr2g0091091 RchiOBHm_Chr5g0019481 RchiOBHm_Chr5g0019491
rosa_laevigata	RLG00000016078 RLG00000016112 RLG00000016113 RLG00000016126 RLG00000016176 RLG00000016179 RLG00000016217 RLG00000019062 RLG00000032446 RLG00000032447 RLG00000032450
rosa_multiflora	Rmu_sc0000259.1_g000018 Rmu_sc0000779.1_g000022 Rmu_sc0002515.1_g000014 Rmu_sc0002759.1_g000046 Rmu_sc0002986.1_g000072 Rmu_sc0005230.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058560 Rroxscaffold_1G00058570 Rroxscaffold_1G00074340 Rroxscaffold_2G00150150 Rroxscaffold_2G00150970 Rroxscaffold_2G00151500 Rroxscaffold_4G00332590
rosa_rugosa	Rorug01G0127100 Rorug02G0009600 Rorug05G0051100 Rorug07G0229300
rosa_samantha	Rh2AG050300 Rh2AG050400 Rh2AG055000 Rh2AG055100 Rh2AG058600 Rh2AG058900 Rh2AG062100 Rh2BG048900 Rh2BG053100 Rh2BG053900 Rh2BG057400 Rh2BG061100 Rh2CG051100 Rh2CG055100 Rh2CG056100 Rh2CG059300 Rh2CG063200 Rh2DG049400 Rh2DG050300 Rh2DG050400 Rh2DG050500 Rh2DG055300 Rh2DG061700 Rh2DG362200 Rh4AG113200 Rh5AG141500 Rh5AG142000 Rh5AG142100 Rh5BG140400 Rh5BG140500 Rh5CG152300 Rh5CG152400 Rh5CG152500 Rh5CG152600 Rh5DG141100 Rh7DG375200
rosa_wichuraiana	Rw2G004030 Rw2G004800 Rw2G005060 Rw7G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	498
AccII	CGCG	2 cut(s)	30, 328
AciI	CCGC	6 cut(s)	292, 326, 328, 404, 407, 410
AcyI	GRCGYC	1 cut(s)	331
AfiI	CCNNNNNNNGG	4 cut(s)	46, 416, 456, 498
AflIII	ACRYGT	2 cut(s)	435, 494
AgsI	TTSAA	1 cut(s)	443
AjnI	CCWGG	2 cut(s)	45, 423
AjuI	GAANNNNNNNTTGG	2 cut(s)	471, 503
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Alw26I	GTCTC	2 cut(s)	338, 414
AlwNI	CAGNNNCTG	1 cut(s)	347
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	2 cut(s)	37, 458
ApaI	GGGCCC	1 cut(s)	41
AspS9I	GGNCC	3 cut(s)	37, 38, 458
AsuC2I	CCSGG	1 cut(s)	466
AvaI	CYCGRG	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	41
BccI	CCATC	1 cut(s)	410
BceAI	ACGGC	1 cut(s)	302
BciT130I	CCWGG	2 cut(s)	47, 425
BciVI	GTATCC	1 cut(s)	315
BcnI	CCSGG	1 cut(s)	466
BcoDI	GTCTC	2 cut(s)	338, 414
BfmI	CTRYAG	1 cut(s)	223
BfuI	GTATCC	1 cut(s)	315
BisI	GCNGC	3 cut(s)	329, 407, 410
BlsI	GCNGC	3 cut(s)	330, 408, 411
Bme1390I	CCNGG	3 cut(s)	47, 425, 466
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	3 cut(s)	37, 38, 458
BmiI	GGNNCC	2 cut(s)	39, 290
BmrFI	CCNGG	3 cut(s)	47, 425, 466
BmsI	GCATC	2 cut(s)	418, 436
BpuMI	CCSGG	1 cut(s)	466
BsaHI	GRCGYC	1 cut(s)	331
BsaI	GGTCTC	1 cut(s)	414
BsaJI	CCNNGG	4 cut(s)	45, 187, 326, 465
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 416, 456, 498
Bse1I	ACTGG	2 cut(s)	301, 341
BseBI	CCWGG	2 cut(s)	47, 425
BseDI	CCNNGG	4 cut(s)	45, 187, 326, 465
BseGI	GGATG	2 cut(s)	55, 433
BseLI	CCNNNNNNNGG	4 cut(s)	46, 416, 456, 498
BseNI	ACTGG	2 cut(s)	301, 341
BseRI	GAGGAG	3 cut(s)	128, 287, 387
BseSI	GKGCMC	1 cut(s)	41
Bsh1236I	CGCG	2 cut(s)	30, 328
BshFI	GGCC	2 cut(s)	39, 460
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	2 cut(s)	351, 465
BslFI	GGGAC	3 cut(s)	104, 214, 329
BslI	CCNNNNNNNGG	4 cut(s)	46, 416, 456, 498
BsmAI	GTCTC	2 cut(s)	338, 414
BsmBI	CGTCTC	1 cut(s)	338
BsmFI	GGGAC	3 cut(s)	104, 214, 329
BsnI	GGCC	2 cut(s)	39, 460
Bso31I	GGTCTC	1 cut(s)	414
BsoBI	CYCGRG	1 cut(s)	269
Bsp120I	GGGCCC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	355
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	6 cut(s)	292, 326, 328, 404, 407, 410
BspANI	GGCC	2 cut(s)	39, 460
BspFNI	CGCG	2 cut(s)	30, 328
BspLI	GGNNCC	2 cut(s)	39, 290
BspMAI	CTGCAG	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	414
BsrI	ACTGG	2 cut(s)	301, 341
BssECI	CCNNGG	4 cut(s)	45, 187, 326, 465
BssMI	GATC	1 cut(s)	355
BssNI	GRCGYC	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	187
Bst2UI	CCWGG	2 cut(s)	47, 425
BstACI	GRCGYC	1 cut(s)	331
BstC8I	GCNNGC	1 cut(s)	462
BstDSI	CCRYGG	2 cut(s)	187, 326
BstF5I	GGATG	2 cut(s)	55, 433
BstFNI	CGCG	2 cut(s)	30, 328
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	2 cut(s)	338, 414
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 222
BstNI	CCWGG	2 cut(s)	47, 425
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	3 cut(s)	45, 423, 464
BstSFI	CTRYAG	1 cut(s)	223
BstSLI	GKGCMC	1 cut(s)	41
BstUI	CGCG	2 cut(s)	30, 328
BsuI	GTATCC	1 cut(s)	315
BsuRI	GGCC	2 cut(s)	39, 460
BtgI	CCRYGG	2 cut(s)	187, 326
BtsCI	GGATG	2 cut(s)	55, 433
Cac8I	GCNNGC	1 cut(s)	462
CaiI	CAGNNNCTG	1 cut(s)	347
Cfr13I	GGNCC	3 cut(s)	37, 38, 458
Cfr42I	CCGCGG	1 cut(s)	329
CseI	GACGC	2 cut(s)	172, 320
CviAII	CATG	4 cut(s)	57, 173, 188, 436
CviJI	RGCY	7 cut(s)	39, 76, 209, 289, 361, 460, 464
CviKI_1	RGCY	7 cut(s)	39, 76, 209, 289, 361, 460, 464
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
EciI	GGCGGA	1 cut(s)	281
Eco130I	CCWWGG	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	41
Eco31I	GGTCTC	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	269
EcoO109I	RGGNCCY	1 cut(s)	38
EcoRII	CCWGG	2 cut(s)	45, 423
EcoT14I	CCWWGG	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	187
Esp3I	CGTCTC	1 cut(s)	338
FaeI	CATG	4 cut(s)	60, 176, 191, 439
FaiI	YATR	9 cut(s)	58, 65, 67, 125, 150, 174, 189, 243, 437
FaqI	GGGAC	3 cut(s)	104, 214, 329
FatI	CATG	4 cut(s)	56, 172, 187, 435
FauI	CCCGC	1 cut(s)	411
Fnu4HI	GCNGC	3 cut(s)	329, 407, 410
FokI	GGATG	2 cut(s)	62, 440
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	3 cut(s)	329, 407, 410
GluI	GCNGC	3 cut(s)	329, 407, 410
HaeIII	GGCC	2 cut(s)	39, 460
HapII	CCGG	2 cut(s)	351, 465
HgaI	GACGC	2 cut(s)	172, 320
Hin1I	GRCGYC	1 cut(s)	331
Hin1II	CATG	4 cut(s)	60, 176, 191, 439
HinfI	GANTC	2 cut(s)	14, 84
HpaII	CCGG	2 cut(s)	351, 465
Hpy188III	TCNNGA	1 cut(s)	269
Hpy99I	CGWCG	1 cut(s)	185
HpyCH4IV	ACGT	2 cut(s)	496, 503
HpyCH4V	TGCA	2 cut(s)	172, 225
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 222
HpySE526I	ACGT	2 cut(s)	496, 503
Hsp92I	GRCGYC	1 cut(s)	331
Hsp92II	CATG	4 cut(s)	60, 176, 191, 439
KspI	CCGCGG	1 cut(s)	329
Kzo9I	GATC	1 cut(s)	355
LmnI	GCTCC	1 cut(s)	294
LweI	GCATC	2 cut(s)	418, 436
MaeII	ACGT	2 cut(s)	496, 503
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	4 cut(s)	204, 242, 455, 479
MfeI	CAATTG	1 cut(s)	167
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	479
MseI	TTAA	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	328
MspI	CCGG	2 cut(s)	351, 465
MspR9I	CCNGG	3 cut(s)	47, 425, 466
MunI	CAATTG	1 cut(s)	167
MvaI	CCWGG	2 cut(s)	47, 425
MvnI	CGCG	2 cut(s)	30, 328
MwoI	GCNNNNNNNGC	2 cut(s)	36, 222
NciI	CCSGG	1 cut(s)	466
NcoI	CCATGG	1 cut(s)	187
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	4 cut(s)	60, 176, 191, 439
NlaIV	GGNNCC	2 cut(s)	39, 290
NmuCI	GTSAC	1 cut(s)	160
NspI	RCATGY	1 cut(s)	439
PaeR7I	CTCGAG	1 cut(s)	269
PciI	ACATGT	1 cut(s)	435
PfeI	GAWTC	2 cut(s)	14, 84
PflMI	CCANNNNNTGG	1 cut(s)	498
PkrI	GCNGC	3 cut(s)	330, 408, 411
PscI	ACATGT	1 cut(s)	435
Psp6I	CCWGG	2 cut(s)	45, 423
PspGI	CCWGG	2 cut(s)	45, 423
PspN4I	GGNNCC	2 cut(s)	39, 290
PspOMI	GGGCCC	1 cut(s)	37
PspPI	GGNCC	3 cut(s)	37, 38, 458
PstI	CTGCAG	1 cut(s)	227
PstNI	CAGNNNCTG	1 cut(s)	347
SacII	CCGCGG	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	3 cut(s)	329, 407, 410
Sau3AI	GATC	1 cut(s)	355
Sau96I	GGNCC	3 cut(s)	37, 38, 458
ScrFI	CCNGG	3 cut(s)	47, 425, 466
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	8 cut(s)	78, 373, 379, 385, 391, 397, 499, 506
SfaNI	GCATC	2 cut(s)	418, 436
SfcI	CTRYAG	1 cut(s)	223
Sfr274I	CTCGAG	1 cut(s)	269
Sfr303I	CCGCGG	1 cut(s)	329
SgrBI	CCGCGG	1 cut(s)	329
SlaI	CTCGAG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	6 cut(s)	292, 326, 328, 404, 407, 410
StyD4I	CCNGG	3 cut(s)	45, 423, 464
StyI	CCWWGG	1 cut(s)	187
TaiI	ACGT	2 cut(s)	499, 506
TaqI	TCGA	3 cut(s)	82, 270, 297
TasI	AATT	1 cut(s)	167
TauI	GCSGC	3 cut(s)	331, 409, 412
TfiI	GAWTC	2 cut(s)	14, 84
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TseFI	GTSAC	1 cut(s)	160
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	119
Van91I	CCANNNNNTGG	1 cut(s)	498
XceI	RCATGY	1 cut(s)	439
XhoI	CTCGAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.