Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000544

Physical Location & Seq

Genomic Coordinates Reverse (-)

14141068 .. 14141388

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG152300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAGTGAGAAGAAGTGGAAGGAAGATGGTGTTCTTCTTGCTATTGCTGCTGGAAATAGACGACCTATTATTCCAAATTTGGAATTCGAGTACCCTGATCCGGACATCCATGAAGATCTGTATCAAGTATCAACTCATCAAATAGTTTTGTGGAGAAGTTTGCAGACCGAGCAATTGGACAAAGTTATGAAGATATGGACAACCTTCCTTGAGCCAGTGTTTGGTTTCCCTCCTCGGCCTCAGGTTGCAGAGGATACTGAAGATGTTGTGAAGGCAAAAACTCATGCTGCCAAAAATGGTGCTGTGAGCAGGGGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

106

Amino Acids

12.11

Weight (kDa)

5.36

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04860 FvH4_1g04920 FvH4_1g05010 FvH4_1g07320 FvH4_5g09280 FvH4_5g09280 FvH4_5g09280
rosa_chinensis	RchiOBHm_Chr2g0088841 RchiOBHm_Chr2g0089881 RchiOBHm_Chr2g0089901 RchiOBHm_Chr2g0089911 RchiOBHm_Chr2g0089921 RchiOBHm_Chr2g0090621 RchiOBHm_Chr2g0091091 RchiOBHm_Chr5g0019481 RchiOBHm_Chr5g0019491
rosa_laevigata	RLG00000016078 RLG00000016112 RLG00000016113 RLG00000016126 RLG00000016176 RLG00000016179 RLG00000016217 RLG00000019062 RLG00000032446 RLG00000032447 RLG00000032450
rosa_multiflora	Rmu_sc0000259.1_g000018 Rmu_sc0000779.1_g000022 Rmu_sc0002515.1_g000014 Rmu_sc0002759.1_g000046 Rmu_sc0002986.1_g000072 Rmu_sc0005230.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058560 Rroxscaffold_1G00058570 Rroxscaffold_1G00074340 Rroxscaffold_2G00150150 Rroxscaffold_2G00150970 Rroxscaffold_2G00151500 Rroxscaffold_4G00332590
rosa_rugosa	Rorug01G0127100 Rorug02G0009600 Rorug05G0051100 Rorug07G0229300
rosa_samantha	Rh2AG050300 Rh2AG050400 Rh2AG055000 Rh2AG055100 Rh2AG058600 Rh2AG058900 Rh2AG062100 Rh2BG048900 Rh2BG053100 Rh2BG053900 Rh2BG057400 Rh2BG061100 Rh2CG051100 Rh2CG055100 Rh2CG056100 Rh2CG059300 Rh2CG063200 Rh2DG049400 Rh2DG050300 Rh2DG050400 Rh2DG050500 Rh2DG055300 Rh2DG061700 Rh2DG362200 Rh4AG113200 Rh5AG141500 Rh5AG142000 Rh5AG142100 Rh5BG140400 Rh5BG140500 Rh5CG152300 Rh5CG152400 Rh5CG152500 Rh5CG152600 Rh5DG141100 Rh7DG375200
rosa_wichuraiana	Rw2G004030 Rw2G004800 Rw2G005060 Rw7G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	221
AccIII	TCCGGA	1 cut(s)	100
AclWI	GGATC	1 cut(s)	92
AcsI	RAATTY	2 cut(s)	76, 83
AcuI	CTGAAG	1 cut(s)	279
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	100, 221
AlwI	GGATC	1 cut(s)	92
Aor13HI	TCCGGA	1 cut(s)	100
AoxI	GGCC	1 cut(s)	236
ApeKI	GCWGC	2 cut(s)	47, 287
ApoI	RAATTY	2 cut(s)	76, 83
AxyI	CCTNAGG	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	34, 274
BccI	CCATC	1 cut(s)	20
BciVI	GTATCC	1 cut(s)	247
BfuI	GTATCC	1 cut(s)	247
BglII	AGATCT	1 cut(s)	115
BisI	GCNGC	2 cut(s)	48, 288
BlsI	GCNGC	2 cut(s)	49, 289
BpuEI	CTTGAG	1 cut(s)	230
BsaBI	GATNNNNATC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	233
BsaWI	WCCGGW	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 221
Bse1I	ACTGG	1 cut(s)	215
Bse21I	CCTNAGG	1 cut(s)	240
Bse8I	GATNNNNATC	1 cut(s)	120
BseAI	TCCGGA	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	233
BseGI	GGATG	1 cut(s)	105
BseJI	GATNNNNATC	1 cut(s)	120
BseLI	CCNNNNNNNGG	2 cut(s)	100, 221
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	1 cut(s)	215
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	2 cut(s)	34, 274
BshFI	GGCC	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	100, 221
BsnI	GGCC	1 cut(s)	238
Bsp13I	TCCGGA	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	97, 115
BspANI	GGCC	1 cut(s)	238
BspCNI	CTCAG	1 cut(s)	253
BspEI	TCCGGA	1 cut(s)	100
BspPI	GGATC	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	233
BssMI	GATC	2 cut(s)	97, 115
BstDEI	CTNAG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	105
BstKTI	GATC	2 cut(s)	100, 118
BstMBI	GATC	2 cut(s)	97, 115
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 169
BstV1I	GCAGC	2 cut(s)	34, 274
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
Bsu36I	CCTNAGG	1 cut(s)	240
BsuI	GTATCC	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	2 cut(s)	110, 284
CviJI	RGCY	2 cut(s)	214, 238
CviKI_1	RGCY	2 cut(s)	214, 238
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	2 cut(s)	99, 117
DpnII	GATC	2 cut(s)	97, 115
Eco57I	CTGAAG	1 cut(s)	279
Eco81I	CCTNAGG	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	83
FaeI	CATG	2 cut(s)	113, 287
FaiI	YATR	4 cut(s)	111, 188, 196, 285
FatI	CATG	2 cut(s)	109, 283
Fnu4HI	GCNGC	2 cut(s)	48, 288
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	2 cut(s)	48, 288
GluI	GCNGC	2 cut(s)	48, 288
HaeIII	GGCC	1 cut(s)	238
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	2 cut(s)	113, 287
HpaII	CCGG	1 cut(s)	101
Hpy188III	TCNNGA	1 cut(s)	101
HpyAV	CCTTC	3 cut(s)	13, 214, 265
HpyCH4V	TGCA	2 cut(s)	163, 248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 169
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	2 cut(s)	113, 287
Kpn2I	TCCGGA	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	97, 115
LpnPI	CCDG	6 cut(s)	36, 108, 114, 227, 228, 295
Lsp1109I	GCAGC	2 cut(s)	34, 274
MalI	GATC	2 cut(s)	99, 117
MboI	GATC	2 cut(s)	97, 115
MboII	GAAGA	6 cut(s)	22, 26, 35, 125, 202, 272
MfeI	CAATTG	1 cut(s)	173
MflI	RGATCY	1 cut(s)	115
MluCI	AATT	3 cut(s)	76, 83, 173
MnlI	CCTC	4 cut(s)	240, 243, 244, 249
MroI	TCCGGA	1 cut(s)	100
MspI	CCGG	1 cut(s)	101
MunI	CAATTG	1 cut(s)	173
MwoI	GCNNNNNNNGC	2 cut(s)	47, 169
NdeII	GATC	2 cut(s)	97, 115
NlaIII	CATG	2 cut(s)	113, 287
NmeAIII	GCCGAG	1 cut(s)	214
PflMI	CCANNNNNTGG	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	49, 289
PsuI	RGATCY	1 cut(s)	115
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SatI	GCNGC	2 cut(s)	48, 288
Sau3AI	GATC	2 cut(s)	97, 115
SetI	ASST	3 cut(s)	67, 206, 246
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	3 cut(s)	76, 83, 173
TaqI	TCGA	1 cut(s)	87
TaqII	GACCGA	1 cut(s)	182
TasI	AATT	3 cut(s)	76, 83, 173
TscAI	CASTG	1 cut(s)	222
TseI	GCWGC	2 cut(s)	47, 287
TspDTI	ATGAA	2 cut(s)	126, 203
TspRI	CASTG	1 cut(s)	222
Van91I	CCANNNNNTGG	1 cut(s)	221
XapI	RAATTY	2 cut(s)	76, 83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.