Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000544

Physical Location & Seq

Genomic Coordinates Reverse (-)

3941640 .. 3942780

Gene Structure 1141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46521

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAGATGGGAGGAGAATAAGCCAGTCGGGTCCCTGCTTCCGAGTTGCGTGGAAGTCAGTGATCACGTCGCAATTCTCCCCGCAGTTGGCTCTGGTCTTGATGAGGATAAGGATTATCAGAATAAATTCAGGGAGGCCGTGGAAGCGTTTCTTGGATTTAGTGGAACACATCACCACGATAGAGACAACTTCTTCCGCCGGCTTCGAACCCCCCTATCGAGGGAAAGATTCGCTGCTCTTTATTTTCATCGTTTACTGCTCAATGAAGCACAGAGGGCCGATTTTCCGGCTGATACCGTAGAGAACCTCAGGAATAGTGTTGTTTGTTATAGTGTGAAAATACAAGGACAGAATATGATTTTCTGGAAAACGAGGATTGCAGTGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.95

Weight (kDa)

7.02

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04860 FvH4_1g04920 FvH4_1g05010 FvH4_1g07320 FvH4_5g09280 FvH4_5g09280 FvH4_5g09280
rosa_chinensis	RchiOBHm_Chr2g0088841 RchiOBHm_Chr2g0089881 RchiOBHm_Chr2g0089901 RchiOBHm_Chr2g0089911 RchiOBHm_Chr2g0089921 RchiOBHm_Chr2g0090621 RchiOBHm_Chr2g0091091 RchiOBHm_Chr5g0019481 RchiOBHm_Chr5g0019491
rosa_laevigata	RLG00000016078 RLG00000016112 RLG00000016113 RLG00000016126 RLG00000016176 RLG00000016179 RLG00000016217 RLG00000019062 RLG00000032446 RLG00000032447 RLG00000032450
rosa_multiflora	Rmu_sc0000259.1_g000018 Rmu_sc0000779.1_g000022 Rmu_sc0002515.1_g000014 Rmu_sc0002759.1_g000046 Rmu_sc0002986.1_g000072 Rmu_sc0005230.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058560 Rroxscaffold_1G00058570 Rroxscaffold_1G00074340 Rroxscaffold_2G00150150 Rroxscaffold_2G00150970 Rroxscaffold_2G00151500 Rroxscaffold_4G00332590
rosa_rugosa	Rorug01G0127100 Rorug02G0009600 Rorug05G0051100 Rorug07G0229300
rosa_samantha	Rh2AG050300 Rh2AG050400 Rh2AG055000 Rh2AG055100 Rh2AG058600 Rh2AG058900 Rh2AG062100 Rh2BG048900 Rh2BG053100 Rh2BG053900 Rh2BG057400 Rh2BG061100 Rh2CG051100 Rh2CG055100 Rh2CG056100 Rh2CG059300 Rh2CG063200 Rh2DG049400 Rh2DG050300 Rh2DG050400 Rh2DG050500 Rh2DG055300 Rh2DG061700 Rh2DG362200 Rh4AG113200 Rh5AG141500 Rh5AG142000 Rh5AG142100 Rh5BG140400 Rh5BG140500 Rh5CG152300 Rh5CG152400 Rh5CG152500 Rh5CG152600 Rh5DG141100 Rh7DG375200
rosa_wichuraiana	Rw2G004030 Rw2G004800 Rw2G005060 Rw7G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	81, 196
AcsI	RAATTY	1 cut(s)	125
AfiI	CCNNNNNNNGG	3 cut(s)	86, 219, 220
AjiI	CACGTC	1 cut(s)	67
AjuI	GAANNNNNNNTTGG	2 cut(s)	135, 167
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	1 cut(s)	177
Alw44I	GTGCAC	1 cut(s)	383
AoxI	GGCC	2 cut(s)	135, 276
ApaLI	GTGCAC	1 cut(s)	383
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	125
Asp700I	GAANNNNTTC	2 cut(s)	125, 147
AspS9I	GGNCC	2 cut(s)	30, 276
AsuHPI	GGTGA	1 cut(s)	164
AsuII	TTCGAA	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	30
AxyI	CCTNAGG	1 cut(s)	308
BaeGI	GKGCMC	1 cut(s)	387
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	1 cut(s)	220
BceAI	ACGGC	1 cut(s)	122
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	177
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme18I	GGWCC	1 cut(s)	30
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	2 cut(s)	30, 276
BmiI	GGNNCC	2 cut(s)	31, 32
Bpu14I	TTCGAA	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 219, 220
Bse118I	RCCGGY	1 cut(s)	198
Bse1I	ACTGG	1 cut(s)	23
Bse21I	CCTNAGG	1 cut(s)	308
BseDI	CCNNGG	1 cut(s)	138
BseLI	CCNNNNNNNGG	3 cut(s)	86, 219, 220
BseMII	CTCAG	1 cut(s)	322
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	387
BseXI	GCAGC	1 cut(s)	220
BshFI	GGCC	2 cut(s)	137, 278
BsiHKAI	GWGCWC	1 cut(s)	387
BsiSI	CCGG	2 cut(s)	199, 287
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	3 cut(s)	86, 219, 220
BsmAI	GTCTC	1 cut(s)	177
BsmFI	GGGAC	1 cut(s)	16
BsnI	GGCC	2 cut(s)	137, 278
Bsp119I	TTCGAA	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	2 cut(s)	81, 196
BspANI	GGCC	2 cut(s)	137, 278
BspCNI	CTCAG	1 cut(s)	321
BspLI	GGNNCC	2 cut(s)	31, 32
BspT104I	TTCGAA	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	1 cut(s)	61
Bst4CI	ACNGT	1 cut(s)	298
BstBI	TTCGAA	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	200
BstDEI	CTNAG	1 cut(s)	308
BstDSI	CCRYGG	1 cut(s)	138
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 275
BstSLI	GKGCMC	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	220
Bsu36I	CCTNAGG	1 cut(s)	308
BsuRI	GGCC	2 cut(s)	137, 278
BtgI	CCRYGG	1 cut(s)	138
BtrI	CACGTC	1 cut(s)	67
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	3 cut(s)	64, 385, 387
Cac8I	GCNNGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	198
Cfr13I	GGNCC	2 cut(s)	30, 276
CviJI	RGCY	6 cut(s)	22, 90, 137, 202, 278, 290
CviKI_1	RGCY	6 cut(s)	22, 90, 137, 202, 278, 290
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
EciI	GGCGGA	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	30
Eco81I	CCTNAGG	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	30
FaiI	YATR	2 cut(s)	330, 356
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FaqI	GGGAC	1 cut(s)	16
FauI	CCCGC	1 cut(s)	88
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	234
GluI	GCNGC	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	137, 278
HapII	CCGG	2 cut(s)	199, 287
HinfI	GANTC	1 cut(s)	228
HpaII	CCGG	2 cut(s)	199, 287
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	2 cut(s)	254, 385
Hpy188I	TCNGA	2 cut(s)	42, 120
Hpy188III	TCNNGA	3 cut(s)	98, 310, 364
Hpy8I	GTNNAC	2 cut(s)	254, 385
Hpy99I	CGWCG	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	2 cut(s)	380, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 275
HpyF3I	CTNAG	1 cut(s)	308
HpySE526I	ACGT	1 cut(s)	66
KflI	GGGWCCC	1 cut(s)	30
KroI	GCCGGC	1 cut(s)	198
KroNI	GCCGGC	1 cut(s)	200
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	61
LpnPI	CCDG	8 cut(s)	36, 47, 78, 115, 212, 295, 300, 349
Lsp1109I	GCAGC	1 cut(s)	220
MaeII	ACGT	1 cut(s)	66
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	2 cut(s)	72, 125
MnlI	CCTC	7 cut(s)	4, 97, 127, 213, 267, 317, 366
MroNI	GCCGGC	1 cut(s)	198
MroXI	GAANNNNTTC	2 cut(s)	125, 147
MspI	CCGG	2 cut(s)	199, 287
MwoI	GCNNNNNNNGC	2 cut(s)	143, 275
NaeI	GCCGGC	1 cut(s)	200
NdeII	GATC	1 cut(s)	61
NgoMIV	GCCGGC	1 cut(s)	198
NlaIV	GGNNCC	2 cut(s)	31, 32
NspV	TTCGAA	1 cut(s)	205
PdiI	GCCGGC	1 cut(s)	200
PdmI	GAANNNNTTC	2 cut(s)	125, 147
PfeI	GAWTC	1 cut(s)	228
PkrI	GCNGC	1 cut(s)	235
PpuMI	RGGWCCY	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	31, 32
PspPI	GGNCC	2 cut(s)	30, 276
PspPPI	RGGWCCY	1 cut(s)	30
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	2 cut(s)	30, 276
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	2 cut(s)	69, 309
SfuI	TTCGAA	1 cut(s)	205
SinI	GGWCC	1 cut(s)	30
Sse9I	AATT	2 cut(s)	72, 125
SsiI	CCGC	2 cut(s)	81, 196
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	2 cut(s)	205, 218
TasI	AATT	2 cut(s)	72, 125
TfiI	GAWTC	1 cut(s)	228
TscAI	CASTG	2 cut(s)	64, 387
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	2 cut(s)	236, 279
TspRI	CASTG	2 cut(s)	64, 387
VneI	GTGCAC	1 cut(s)	383
VpaK11BI	GGWCC	1 cut(s)	30
XapI	RAATTY	1 cut(s)	125
XmnI	GAANNNNTTC	2 cut(s)	125, 147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.