RchiOBHm_Chr2g0088841

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000544
Physical Location & Seq
Forward (+)
3226440 .. 3227726
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46414

Sequence Viewer

Length: 879 bp
ATGAAACGAAAGCAAGTTCCAAAATCTTATCCGGAAGGTGACAATGTTTTTGTCAGCGATTACATCGACTTTCATGGTGGAAATTTATTCCACGAAGTGAAGGATTCAAACCGTCGTACACTGTTCGAGATCCCTCTCCGGGATCTCCAAAGATTTTCAAGGGATGTGTTTTCCGGAGTGATTACTCGTCGGCGAGAGGGAAAACCGATCGGTTCCCTCTTGCCGAAGAATCTTCAGGTAATAGATCATCGAGTGATCTTGCCCAAGATTTCGGAATCCGATGGTTATGATTATGAGCGACGGGTTGAAGAGTTCTTTGTGGCTGTGTTTCCGAACCCAAATGCAGAGCTTGCCGATTTTCTTAGAAAACTCAGGCAACCACAACTGAAAATGAGACAGTTTGAGTCTCTATATTTTCATTACTTTCTTTTGAACGAGGAACAACGTGCGGATTTTGTAAAGAATTCAGTGGATAATCTCCGTAATAAGAGAGTTATCTTTAAAGGGTCATTTTTCAAGTGGGAAGTGGCTTATGAGAAGTGGGAGGCATTCGTGAATGGGGGCAGCAATAAAAAATATGATTTGCTACAGGCTAGTACGAAGGATAGCGGGGCTGCAATGGTTTGGAATTTTAAGAGCAGAAGAAATCCAGGCAACTGTGTGGATGAAGCTGAGTTTGGACGTAACATCGTTCATCACATTAATGAAAGGCGAGAAAAGGCAACACCACCAATGTGCCCACTGGATAAGAACCAGATAGGCCATGCAGTTCATAGAGTGATGCCTGGCATCAACTCTAAGTTGTTTGACTTCATGTTTGATTGTTATGTTGACATGGACTTTGATAAAGTCCTTGTTGACCCCCCCAAGAGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

292

Amino Acids

34.28

Weight (kDa)

9.07

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 31, 173
AciI CCGC 2 cut(s) 449, 609
AclWI GGATC 2 cut(s) 124, 150
AcsI RAATTY 3 cut(s) 82, 463, 628
AcuI CTGAAG 1 cut(s) 218
AdeI CACNNNGTG 1 cut(s) 97
AfaI GTAC 2 cut(s) 118, 598
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 5 cut(s) 108, 159, 308, 433, 517
AjnI CCWGG 2 cut(s) 649, 784
AjuI GAANNNNNNNTTGG 2 cut(s) 660, 692
AleI CACNNNNGTG 1 cut(s) 733
AluBI AGCT 2 cut(s) 349, 671
AluI AGCT 2 cut(s) 349, 671
Alw26I GTCTC 2 cut(s) 388, 411
AlwI GGATC 2 cut(s) 124, 150
Aor13HI TCCGGA 2 cut(s) 31, 173
AoxI GGCC 1 cut(s) 760
ApeKI GCWGC 2 cut(s) 564, 614
ApoI RAATTY 3 cut(s) 82, 463, 628
ArsI GACNNNNNNTTYG 6 cut(s) 32, 64, 800, 824, 832, 856
AseI ATTAAT 1 cut(s) 702
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 50
BaeGI GKGCMC 1 cut(s) 740
BbvI GCAGC 2 cut(s) 576, 601
BccI CCATC 1 cut(s) 275
BciT130I CCWGG 2 cut(s) 651, 786
BcnI CCSGG 1 cut(s) 140
BcoDI GTCTC 2 cut(s) 388, 411
BfaI CTAG 1 cut(s) 594
BfmI CTRYAG 1 cut(s) 587
BisI GCNGC 2 cut(s) 565, 615
BlsI GCNGC 2 cut(s) 566, 616
Bme1390I CCNGG 3 cut(s) 140, 651, 786
BmiI GGNNCC 1 cut(s) 214
BmrFI CCNGG 3 cut(s) 140, 651, 786
BmsI GCATC 2 cut(s) 771, 798
BpuMI CCSGG 1 cut(s) 140
BsaWI WCCGGW 2 cut(s) 31, 173
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 1 cut(s) 747
Bse3DI GCAATG 1 cut(s) 624
BseAI TCCGGA 2 cut(s) 31, 173
BseBI CCWGG 2 cut(s) 651, 786
BseGI GGATG 2 cut(s) 169, 670
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 2 cut(s) 385, 663
BseNI ACTGG 1 cut(s) 747
BseSI GKGCMC 1 cut(s) 740
BseXI GCAGC 2 cut(s) 576, 601
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 1 cut(s) 762
BsiEI CGRYCG 1 cut(s) 210
BsiSI CCGG 3 cut(s) 32, 139, 174
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 2 cut(s) 388, 411
BsmI GAATGC 1 cut(s) 548
BsnI GGCC 1 cut(s) 762
Bsp1286I GDGCHC 1 cut(s) 740
Bsp13I TCCGGA 2 cut(s) 31, 173
Bsp143I GATC 5 cut(s) 129, 142, 207, 244, 255
BspACI CCGC 2 cut(s) 449, 609
BspANI GGCC 1 cut(s) 762
BspCNI CTCAG 2 cut(s) 384, 664
BspEI TCCGGA 2 cut(s) 31, 173
BspLI GGNNCC 1 cut(s) 214
BspPI GGATC 2 cut(s) 124, 150
BsrDI GCAATG 1 cut(s) 624
BsrI ACTGG 1 cut(s) 747
BssMI GATC 5 cut(s) 129, 142, 207, 244, 255
Bst2UI CCWGG 2 cut(s) 651, 786
Bst4CI ACNGT 4 cut(s) 113, 123, 399, 659
Bst6I CTCTTC 1 cut(s) 303
BstAPI GCANNNNNTGC 1 cut(s) 350
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 4 cut(s) 362, 371, 672, 798
BstF5I GGATG 2 cut(s) 169, 670
BstKTI GATC 5 cut(s) 132, 145, 210, 247, 258
BstMAI GTCTC 2 cut(s) 388, 411
BstMBI GATC 5 cut(s) 129, 142, 207, 244, 255
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstNI CCWGG 2 cut(s) 651, 786
BstSCI CCNGG 3 cut(s) 138, 649, 784
BstSFI CTRYAG 1 cut(s) 587
BstSLI GKGCMC 1 cut(s) 740
BstV1I GCAGC 2 cut(s) 576, 601
BstX2I RGATCY 2 cut(s) 129, 142
BstYI RGATCY 2 cut(s) 129, 142
BsuRI GGCC 1 cut(s) 762
BtsCI GGATG 2 cut(s) 169, 670
BtsIMutI CAGTG 3 cut(s) 119, 474, 740
Cac8I GCNNGC 1 cut(s) 351
Csp6I GTAC 2 cut(s) 117, 597
CviAII CATG 4 cut(s) 74, 764, 814, 835
CviJI RGCY 7 cut(s) 323, 349, 530, 593, 614, 671, 762
CviKI_1 RGCY 7 cut(s) 323, 349, 530, 593, 614, 671, 762
CviQI GTAC 2 cut(s) 117, 597
DdeI CTNAG 4 cut(s) 362, 371, 672, 798
DpnI GATC 5 cut(s) 131, 144, 209, 246, 257
DpnII GATC 5 cut(s) 129, 142, 207, 244, 255
DraI TTTAAA 1 cut(s) 502
DraIII CACNNNGTG 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Eco57I CTGAAG 1 cut(s) 218
EcoRI GAATTC 1 cut(s) 463
EcoRII CCWGG 2 cut(s) 649, 784
FaeI CATG 4 cut(s) 77, 767, 817, 838
FatI CATG 4 cut(s) 73, 763, 813, 834
FauI CCCGC 1 cut(s) 602
Fnu4HI GCNGC 2 cut(s) 565, 615
FokI GGATG 2 cut(s) 176, 677
Fsp4HI GCNGC 2 cut(s) 565, 615
FspBI CTAG 1 cut(s) 594
GluI GCNGC 2 cut(s) 565, 615
HaeIII GGCC 1 cut(s) 762
HapII CCGG 3 cut(s) 32, 139, 174
Hin1II CATG 4 cut(s) 77, 767, 817, 838
HincII GTYRAC 2 cut(s) 832, 859
HindII GTYRAC 2 cut(s) 832, 859
HinfI GANTC 4 cut(s) 104, 229, 275, 404
HpaII CCGG 3 cut(s) 32, 139, 174
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 3 cut(s) 119, 832, 859
Hpy188I TCNGA 3 cut(s) 274, 280, 333
Hpy188III TCNNGA 4 cut(s) 32, 127, 174, 553
Hpy8I GTNNAC 3 cut(s) 119, 832, 859
Hpy99I CGWCG 3 cut(s) 117, 192, 303
HpyAV CCTTC 3 cut(s) 29, 94, 595
HpyCH4III ACNGT 4 cut(s) 113, 123, 399, 659
HpyCH4IV ACGT 2 cut(s) 445, 682
HpyCH4V TGCA 3 cut(s) 344, 617, 767
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 4 cut(s) 362, 371, 672, 798
HpySE526I ACGT 2 cut(s) 445, 682
Hsp92II CATG 4 cut(s) 77, 767, 817, 838
Kpn2I TCCGGA 2 cut(s) 31, 173
Kzo9I GATC 5 cut(s) 129, 142, 207, 244, 255
Lsp1109I GCAGC 2 cut(s) 576, 601
LweI GCATC 2 cut(s) 771, 798
MaeI CTAG 1 cut(s) 594
MaeII ACGT 2 cut(s) 445, 682
MaeIII GTNAC 2 cut(s) 38, 683
MalI GATC 5 cut(s) 131, 144, 209, 246, 257
MboI GATC 5 cut(s) 129, 142, 207, 244, 255
MboII GAAGA 4 cut(s) 224, 238, 320, 654
MfeI CAATTG 1 cut(s) 874
MflI RGATCY 2 cut(s) 129, 142
MhlI GDGCHC 1 cut(s) 740
MluCI AATT 4 cut(s) 82, 463, 628, 874
MlyI GAGTC 1 cut(s) 413
MnlI CCTC 5 cut(s) 144, 190, 227, 430, 538
MroI TCCGGA 2 cut(s) 31, 173
MseI TTAA 3 cut(s) 501, 633, 702
MslI CAYNNNNRTG 2 cut(s) 702, 733
MspI CCGG 3 cut(s) 32, 139, 174
MspR9I CCNGG 3 cut(s) 140, 651, 786
MunI CAATTG 1 cut(s) 874
Mva1269I GAATGC 1 cut(s) 548
MvaI CCWGG 2 cut(s) 651, 786
MwoI GCNNNNNNNGC 1 cut(s) 350
NciI CCSGG 1 cut(s) 140
NdeII GATC 5 cut(s) 129, 142, 207, 244, 255
NlaIII CATG 4 cut(s) 77, 767, 817, 838
NlaIV GGNNCC 1 cut(s) 214
NmuCI GTSAC 1 cut(s) 38
OliI CACNNNNGTG 1 cut(s) 733
PctI GAATGC 1 cut(s) 548
PfeI GAWTC 3 cut(s) 104, 229, 275
PfoI TCCNGGA 1 cut(s) 138
PkrI GCNGC 2 cut(s) 566, 616
Ple19I CGATCG 1 cut(s) 210
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
PshBI ATTAAT 1 cut(s) 702
Psp6I CCWGG 2 cut(s) 649, 784
PspGI CCWGG 2 cut(s) 649, 784
PspN4I GGNNCC 1 cut(s) 214
PsuI RGATCY 2 cut(s) 129, 142
PvuI CGATCG 1 cut(s) 210
RsaI GTAC 2 cut(s) 118, 598
RsaNI GTAC 2 cut(s) 117, 597
RseI CAYNNNNRTG 2 cut(s) 702, 733
SaqAI TTAA 3 cut(s) 501, 633, 702
SatI GCNGC 2 cut(s) 565, 615
Sau3AI GATC 5 cut(s) 129, 142, 207, 244, 255
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 3 cut(s) 140, 651, 786
SduI GDGCHC 1 cut(s) 740
SetI ASST 6 cut(s) 40, 240, 351, 448, 673, 685
SfaNI GCATC 2 cut(s) 771, 798
SfcI CTRYAG 1 cut(s) 587
SmiMI CAYNNNNRTG 2 cut(s) 702, 733
Sse9I AATT 4 cut(s) 82, 463, 628, 874
SsiI CCGC 2 cut(s) 449, 609
SspMI CTAG 1 cut(s) 594
StyD4I CCNGG 3 cut(s) 138, 649, 784
TaaI ACNGT 4 cut(s) 113, 123, 399, 659
TaiI ACGT 2 cut(s) 448, 685
TaqI TCGA 3 cut(s) 66, 126, 250
TasI AATT 4 cut(s) 82, 463, 628, 874
TfiI GAWTC 3 cut(s) 104, 229, 275
Tru1I TTAA 3 cut(s) 501, 633, 702
Tru9I TTAA 3 cut(s) 501, 633, 702
TscAI CASTG 3 cut(s) 126, 474, 747
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 2 cut(s) 564, 614
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 8 cut(s) 17, 62, 407, 681, 683, 720, 761, 802
TspGWI ACGGA 1 cut(s) 470
TspRI CASTG 3 cut(s) 126, 474, 747
VspI ATTAAT 1 cut(s) 702
XapI RAATTY 3 cut(s) 82, 463, 628
XspI CTAG 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.