Rh4AG113200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000544
Physical Location & Seq
Reverse (-)
24492074 .. 24495166
3093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG113200.1

Sequence Viewer

Length: 1044 bp
ATGGCATTTCGCCTCTTCAGGCGTAATTTTCAAGTTCTGCCCAACTGTCACAGCGGATGTGAATTTCAGGATTCTGATGCTCTTCATCGCCACTCTTCCTCTCTCTTGGATTTGATGGCAAGCAAATTGAGTTTTGTAAAATTGAATCTTGGTATTAAGCTTTGTGGTGTTTGGGTTGCTGGCAAGGAACTGGAACAGGCGGCATTCCTAGCACAGCTTGAATCGGAGTATCAAAATGTGTTGATGGTGCTGCTAGTCAAGGGATTGAGTTGGAATGAATGGGATGTGTTAGATGAAGTGGCATTTAGATGGGCTAACAAGATGGGTGTGCCTCCCTTGAATACTGATAGTGTGAAAATCAGGGACAACAAAGCCTATATTCCGAGGCAAGGCTCTCGAGATGATTCTAGGAACTACGCACATCGGTATCTGTATTTCATCCTTTCTGTTTATGGCCCTGTGGCTGATAATAGGCTTCTTGATGACTTTTGTAGAAAGCTGAGTCAACCAAACCTCACACTGCTCAGATTTCAGAATTTGTATTTCCATAAACTTTTACAAAGCCGGGAGGAAATCAATGACTTCCCAGTAGTGGCGGTTGAAAACTTCCGGCTCAGGAAGTATTTTTACAATGGGAGAGTGCGCAATTGGGATGTGGCATATCGATTGTGGGCAGAGGAGAAATACCACAGGGAGATTAATCTTTTTGAAACTTGCATAAAAAACATTTATGTGTGGAGAGCCTACAATTACAGAATTTACGCTGGTAATCCCACAGATGAAGCCAAGCTAGTGCGTAATCTCATCATCCACTTCAACCAGTGCAGGATGAAGAATGTTCTCCCACCTGCAGCTTTCTATGATAAAAATCAGATTGGAGAAGTGGTATTCGACCTCTTTCCTGATATTGATTCCAGCCTCTTTGATTTCATGTACGAACGTGGAGTTTATATGGACTTCACAGCACTTCGTACATTTTACAGGTGCCACTTTGCGTTTTTGATTAGTTTCCTTGAGGCAATATTTCATGATCTTGTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

347

Amino Acids

41.1

Weight (kDa)

8.36

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 856
Acc16I TGCGCA 1 cut(s) 644
Acc36I ACCTGC 1 cut(s) 856
AccB1I GGYRCC 1 cut(s) 984
AciI CCGC 3 cut(s) 54, 200, 596
AcsI RAATTY 3 cut(s) 62, 535, 756
AfaI GTAC 2 cut(s) 935, 973
AfiI CCNNNNNNNGG 2 cut(s) 389, 592
AgsI TTSAA 7 cut(s) 32, 145, 221, 340, 602, 710, 817
AluBI AGCT 5 cut(s) 160, 217, 499, 790, 854
AluI AGCT 5 cut(s) 160, 217, 499, 790, 854
Ama87I CYCGRG 1 cut(s) 396
AoxI GGCC 1 cut(s) 454
ApeKI GCWGC 2 cut(s) 250, 851
ApoI RAATTY 3 cut(s) 62, 535, 756
AseI ATTAAT 1 cut(s) 699
AspLEI GCGC 1 cut(s) 645
AspS9I GGNCC 1 cut(s) 455
AsuC2I CCSGG 1 cut(s) 566
AvaI CYCGRG 1 cut(s) 396
BaeI ACNNNNGTAYC 2 cut(s) 410, 443
BanI GGYRCC 1 cut(s) 984
BarI GAAGNNNNNNTAC 2 cut(s) 611, 643
BbvI GCAGC 2 cut(s) 237, 863
BccI CCATC 4 cut(s) 109, 238, 303, 316
BcgI CGANNNNNNTGC 2 cut(s) 377, 411
BcnI CCSGG 1 cut(s) 566
BfaI CTAG 4 cut(s) 209, 254, 408, 791
BfmI CTRYAG 1 cut(s) 849
BfuAI ACCTGC 1 cut(s) 856
BisI GCNGC 3 cut(s) 201, 251, 852
BlsI GCNGC 3 cut(s) 202, 252, 853
Bme1390I CCNGG 1 cut(s) 566
BmeT110I CYCGRG 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 1 cut(s) 986
BmrFI CCNGG 1 cut(s) 566
BmrI ACTGGG 1 cut(s) 581
BmsI GCATC 1 cut(s) 67
BmuI ACTGGG 1 cut(s) 581
Bpu10I CCTNAGC 1 cut(s) 614
BpuEI CTTGAG 1 cut(s) 1034
BpuMI CCSGG 1 cut(s) 566
Bsa29I ATCGAT 1 cut(s) 664
BsaBI GATNNNNATC 1 cut(s) 867
BsaJI CCNNGG 1 cut(s) 383
BsaXI ACNNNNNCTCC 2 cut(s) 870, 900
Bsc4I CCNNNNNNNGG 2 cut(s) 389, 592
Bse1I ACTGG 3 cut(s) 195, 587, 820
Bse8I GATNNNNATC 1 cut(s) 867
BseCI ATCGAT 1 cut(s) 664
BseDI CCNNGG 1 cut(s) 383
BseGI GGATG 6 cut(s) 62, 289, 438, 658, 807, 834
BseJI GATNNNNATC 1 cut(s) 867
BseLI CCNNNNNNNGG 2 cut(s) 389, 592
BseMII CTCAG 3 cut(s) 491, 538, 628
BseNI ACTGG 3 cut(s) 195, 587, 820
BseRI GAGGAG 1 cut(s) 692
BseXI GCAGC 2 cut(s) 237, 863
BsgI GTGCAG 1 cut(s) 844
BshFI GGCC 1 cut(s) 456
BshNI GGYRCC 1 cut(s) 984
BshVI ATCGAT 1 cut(s) 664
BsiHKCI CYCGRG 1 cut(s) 396
BsiSI CCGG 2 cut(s) 565, 610
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 2 cut(s) 389, 592
BsmFI GGGAC 1 cut(s) 377
BsmI GAATGC 1 cut(s) 203
BsnI GGCC 1 cut(s) 456
BsoBI CYCGRG 1 cut(s) 396
Bsp143I GATC 1 cut(s) 1030
BspACI CCGC 3 cut(s) 54, 200, 596
BspANI GGCC 1 cut(s) 456
BspCNI CTCAG 3 cut(s) 492, 537, 627
BspDI ATCGAT 1 cut(s) 664
BspHI TCATGA 1 cut(s) 1027
BspLI GGNNCC 1 cut(s) 986
BspMAI CTGCAG 1 cut(s) 853
BspMI ACCTGC 1 cut(s) 856
BspQI GCTCTTC 1 cut(s) 87
BspT107I GGYRCC 1 cut(s) 984
BsrI ACTGG 3 cut(s) 195, 587, 820
BssECI CCNNGG 1 cut(s) 383
BssMI GATC 1 cut(s) 1030
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 3 cut(s) 20, 87, 100
BstC8I GCNNGC 2 cut(s) 121, 181
BstDEI CTNAG 4 cut(s) 500, 524, 614, 1041
BstF5I GGATG 6 cut(s) 62, 289, 438, 658, 807, 834
BstHHI GCGC 1 cut(s) 645
BstKTI GATC 1 cut(s) 1033
BstMBI GATC 1 cut(s) 1030
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 564
BstSFI CTRYAG 1 cut(s) 849
BstV1I GCAGC 2 cut(s) 237, 863
Bsu15I ATCGAT 1 cut(s) 664
BsuRI GGCC 1 cut(s) 456
BsuTUI ATCGAT 1 cut(s) 664
BtgZI GCGATG 1 cut(s) 71
BtsCI GGATG 6 cut(s) 62, 289, 438, 658, 807, 834
BtsI GCAGTG 1 cut(s) 518
BtsIMutI CAGTG 2 cut(s) 518, 827
BveI ACCTGC 1 cut(s) 856
Cac8I GCNNGC 2 cut(s) 121, 181
CciI TCATGA 1 cut(s) 1027
CfoI GCGC 1 cut(s) 645
Cfr13I GGNCC 1 cut(s) 455
ClaI ATCGAT 1 cut(s) 664
Csp6I GTAC 2 cut(s) 934, 972
CviAII CATG 2 cut(s) 931, 1028
CviQI GTAC 2 cut(s) 934, 972
DdeI CTNAG 4 cut(s) 500, 524, 614, 1041
DpnI GATC 1 cut(s) 1032
DpnII GATC 1 cut(s) 1030
Eam1104I CTCTTC 3 cut(s) 20, 87, 100
EarI CTCTTC 3 cut(s) 20, 87, 100
Eco88I CYCGRG 1 cut(s) 396
FaeI CATG 2 cut(s) 934, 1031
FaqI GGGAC 1 cut(s) 377
FatI CATG 2 cut(s) 930, 1027
Fnu4HI GCNGC 3 cut(s) 201, 251, 852
FokI GGATG 6 cut(s) 69, 296, 425, 665, 794, 841
Fsp4HI GCNGC 3 cut(s) 201, 251, 852
FspBI CTAG 4 cut(s) 209, 254, 408, 791
FspI TGCGCA 1 cut(s) 644
GlaI GCGC 1 cut(s) 644
GluI GCNGC 3 cut(s) 201, 251, 852
HaeIII GGCC 1 cut(s) 456
HapII CCGG 2 cut(s) 565, 610
HhaI GCGC 1 cut(s) 645
Hin1II CATG 2 cut(s) 934, 1031
Hin6I GCGC 1 cut(s) 643
HinP1I GCGC 1 cut(s) 643
HincII GTYRAC 1 cut(s) 506
HindII GTYRAC 1 cut(s) 506
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 6 cut(s) 71, 145, 221, 404, 502, 911
HpaII CCGG 2 cut(s) 565, 610
Hpy166II GTNNAC 1 cut(s) 506
Hpy188I TCNGA 6 cut(s) 76, 226, 384, 527, 534, 873
Hpy188III TCNNGA 7 cut(s) 68, 396, 398, 479, 616, 902, 1028
Hpy8I GTNNAC 1 cut(s) 506
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 940
HpyCH4V TGCA 3 cut(s) 717, 825, 851
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 4 cut(s) 500, 524, 614, 1041
HpySE526I ACGT 1 cut(s) 940
Hsp92II CATG 2 cut(s) 934, 1031
HspAI GCGC 1 cut(s) 643
Kzo9I GATC 1 cut(s) 1030
LguI GCTCTTC 1 cut(s) 87
Lsp1109I GCAGC 2 cut(s) 237, 863
LweI GCATC 1 cut(s) 67
MaeI CTAG 4 cut(s) 209, 254, 408, 791
MaeII ACGT 1 cut(s) 940
MaeIII GTNAC 1 cut(s) 47
MalI GATC 1 cut(s) 1032
MboI GATC 1 cut(s) 1030
MboII GAAGA 4 cut(s) 7, 74, 87, 844
MfeI CAATTG 1 cut(s) 646
MluCI AATT 8 cut(s) 25, 62, 125, 140, 535, 646, 748, 756
MlyI GAGTC 1 cut(s) 511
MmeI TCCRAC 1 cut(s) 251
MseI TTAA 2 cut(s) 156, 699
MslI CAYNNNNRTG 2 cut(s) 307, 731
MspA1I CMGCKG 1 cut(s) 54
MspI CCGG 2 cut(s) 565, 610
MspR9I CCNGG 1 cut(s) 566
MunI CAATTG 1 cut(s) 646
Mva1269I GAATGC 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 209
NciI CCSGG 1 cut(s) 566
NdeII GATC 1 cut(s) 1030
NlaIII CATG 2 cut(s) 934, 1031
NlaIV GGNNCC 1 cut(s) 986
NmuCI GTSAC 1 cut(s) 47
NsbI TGCGCA 1 cut(s) 644
PaeR7I CTCGAG 1 cut(s) 396
PagI TCATGA 1 cut(s) 1027
PaqCI CACCTGC 1 cut(s) 856
PciSI GCTCTTC 1 cut(s) 87
PctI GAATGC 1 cut(s) 203
PfeI GAWTC 5 cut(s) 71, 145, 221, 404, 911
PkrI GCNGC 3 cut(s) 202, 252, 853
PleI GAGTC 1 cut(s) 510
PpsI GAGTC 1 cut(s) 510
PshBI ATTAAT 1 cut(s) 699
PspN4I GGNNCC 1 cut(s) 986
PspPI GGNCC 1 cut(s) 455
PstI CTGCAG 1 cut(s) 853
RsaI GTAC 2 cut(s) 935, 973
RsaNI GTAC 2 cut(s) 934, 972
RseI CAYNNNNRTG 2 cut(s) 307, 731
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 2 cut(s) 156, 699
SatI GCNGC 3 cut(s) 201, 251, 852
Sau3AI GATC 1 cut(s) 1030
Sau96I GGNCC 1 cut(s) 455
SchI GAGTC 1 cut(s) 511
ScrFI CCNGG 1 cut(s) 566
SfaNI GCATC 1 cut(s) 67
SfcI CTRYAG 1 cut(s) 849
Sfr274I CTCGAG 1 cut(s) 396
SlaI CTCGAG 1 cut(s) 396
SmiMI CAYNNNNRTG 2 cut(s) 307, 731
SmlI CTYRAG 2 cut(s) 396, 1013
SmoI CTYRAG 2 cut(s) 396, 1013
Sse9I AATT 8 cut(s) 25, 62, 125, 140, 535, 646, 748, 756
SsiI CCGC 3 cut(s) 54, 200, 596
SspI AATATT 1 cut(s) 1023
SspMI CTAG 4 cut(s) 209, 254, 408, 791
StyD4I CCNGG 1 cut(s) 564
TaaI ACNGT 1 cut(s) 47
TaiI ACGT 1 cut(s) 943
TaqI TCGA 3 cut(s) 397, 664, 891
TasI AATT 8 cut(s) 25, 62, 125, 140, 535, 646, 748, 756
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 5 cut(s) 71, 145, 221, 404, 911
Tru1I TTAA 2 cut(s) 156, 699
Tru9I TTAA 2 cut(s) 156, 699
TscAI CASTG 2 cut(s) 525, 827
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 2 cut(s) 250, 851
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 8 cut(s) 74, 291, 309, 427, 795, 845, 919, 1016
TspRI CASTG 2 cut(s) 525, 827
VspI ATTAAT 1 cut(s) 699
XapI RAATTY 3 cut(s) 62, 535, 756
XhoI CTCGAG 1 cut(s) 396
XspI CTAG 4 cut(s) 209, 254, 408, 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.