FvH4_1g07320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000544
Physical Location & Seq
Forward (+)
3873514 .. 3875774
2261 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g07320.t1

Sequence Viewer

Length: 906 bp
ATGGCCGATGGCAAACGAAAAGCGACGGTGCCGACGACGGAGGTGGCGAAGCGCCAGAGGCCGGTAAACGTTGCCACAGTGGGGGACTATCTTCGGTATCACGGCGGCGTTGTTCGGCGGAGGGTCTTCAGTGTGTTTACCAGAGGAAAGGTCCTGTATGAAATACCCGAAGAACTCTATCAAAATTTGACAAGGGATGTGCTCAATAGGGTCCTCACACGTTGGGAGAATAATCTTCCTATCGGTTCATTGGATATCGAGGACGTCATTGTCGAAGACAATGCAGCCTTTATACCAAGTCTTGGCTCCAGTGATGAGGATACAGATTACAGAGGGAAAACCAGGAGTTTTGTTGTTGCACTCTTTGGTCAATCAGATTCATGGGAGGAACGGGACGACTTTCTGGGGAAACTAAGCACCTTTAGCCTGACCAGGAAGGAATATGACGCTATATATTTCCATTACTTCCTGAAAAATCGTGAGGAGAGGGCCATCTATCCGGCTGAGGTGGTTGATAGATTCAAGAATAAAAGAGTAATGTATAAGGGACAACTAATGAAGTGGGAAGCAGCATATAACAAGTGGGAGAAATTAACATATCCTCATGAGAAGCAGATAGATCTAGAGGCGGCAGTTAAGCAGAATGAATATGCTTTGAAAGTGTTTAAACACAAAACCTACAAAGCAAGTAGGGTAAGCAAGATTAAACTTGCTCGAAATATACTTGTGCATCTGAACGACTACCGGGAACGTGAGTCCAAACCTTTGTACACACTGTATGAGCTTGGATCATTAATTGAAGAGATTTTCCCCGGACTGGGTTTACGCATTTTCAACTTTCTCTGGGACCTGCGACTAGATCTTGACTTTACCAAGTGCCGGAATCACTTTAAATGCTTAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

302

Amino Acids

35.49

Weight (kDa)

9.2

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 269
AatII GACGTC 1 cut(s) 267
Acc36I ACCTGC 1 cut(s) 858
AccB1I GGYRCC 1 cut(s) 28
AccB7I CCANNNNNTGG 1 cut(s) 302
AciI CCGC 3 cut(s) 105, 118, 629
AclI AACGTT 1 cut(s) 69
AclWI GGATC 1 cut(s) 796
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 184
AcuI CTGAAG 1 cut(s) 112
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 1 cut(s) 770
AfiI CCNNNNNNNGG 6 cut(s) 61, 81, 302, 817, 818, 879
AflII CTTAAG 1 cut(s) 898
AflIII ACRYGT 1 cut(s) 218
AgsI TTSAA 4 cut(s) 523, 658, 800, 835
AjnI CCWGG 2 cut(s) 341, 431
AluBI AGCT 1 cut(s) 784
AluI AGCT 1 cut(s) 784
Alw21I GWGCWC 1 cut(s) 204
AlwI GGATC 1 cut(s) 796
AoxI GGCC 3 cut(s) 3, 59, 489
ApeKI GCWGC 2 cut(s) 284, 569
ApoI RAATTY 1 cut(s) 184
AseI ATTAAT 1 cut(s) 794
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 4 cut(s) 151, 211, 489, 847
AsuC2I CCSGG 2 cut(s) 746, 813
AvaII GGWCC 3 cut(s) 151, 211, 847
BanI GGYRCC 1 cut(s) 28
BbsI GAAGAC 2 cut(s) 118, 282
Bbv12I GWGCWC 1 cut(s) 204
BbvCI CCTCAGC 1 cut(s) 504
BbvI GCAGC 2 cut(s) 296, 581
BccI CCATC 2 cut(s) 2, 500
BceAI ACGGC 1 cut(s) 118
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BciT130I CCWGG 2 cut(s) 343, 433
BciVI GTATCC 1 cut(s) 313
BcnI CCSGG 2 cut(s) 746, 813
BfaI CTAG 2 cut(s) 623, 857
BfoI RGCGCY 1 cut(s) 55
BfrI CTTAAG 1 cut(s) 898
BfuAI ACCTGC 1 cut(s) 858
BfuI GTATCC 1 cut(s) 313
BglII AGATCT 2 cut(s) 619, 859
BisI GCNGC 4 cut(s) 106, 285, 570, 630
BlsI GCNGC 4 cut(s) 107, 286, 571, 631
Bme1390I CCNGG 4 cut(s) 343, 433, 746, 813
Bme18I GGWCC 3 cut(s) 151, 211, 847
BmgT120I GGNCC 4 cut(s) 151, 211, 489, 847
BmiI GGNNCC 4 cut(s) 30, 212, 307, 848
BmrFI CCNGG 4 cut(s) 343, 433, 746, 813
BmrI ACTGGG 1 cut(s) 827
BmsI GCATC 1 cut(s) 739
BmuI ACTGGG 1 cut(s) 827
BpiI GAAGAC 2 cut(s) 118, 282
BpmI CTGGAG 1 cut(s) 292
Bpu10I CCTNAGC 1 cut(s) 504
BpuMI CCSGG 2 cut(s) 746, 813
BsaHI GRCGYC 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 811
Bsc4I CCNNNNNNNGG 6 cut(s) 61, 81, 302, 817, 818, 879
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 2 cut(s) 309, 822
BseBI CCWGG 2 cut(s) 343, 433
BseDI CCNNGG 1 cut(s) 811
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 6 cut(s) 61, 81, 302, 817, 818, 879
BseMII CTCAG 1 cut(s) 495
BseNI ACTGG 2 cut(s) 309, 822
BseRI GAGGAG 1 cut(s) 497
BseXI GCAGC 2 cut(s) 296, 581
BshFI GGCC 3 cut(s) 5, 61, 491
BshNI GGYRCC 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 204
BsiSI CCGG 5 cut(s) 62, 500, 745, 813, 880
BslFI GGGAC 4 cut(s) 98, 407, 561, 860
BslI CCNNNNNNNGG 6 cut(s) 61, 81, 302, 817, 818, 879
BsmFI GGGAC 4 cut(s) 98, 407, 561, 860
BsnI GGCC 3 cut(s) 5, 61, 491
Bsp1286I GDGCHC 1 cut(s) 204
Bsp1407I TGTACA 1 cut(s) 768
Bsp143I GATC 3 cut(s) 619, 788, 859
BspACI CCGC 3 cut(s) 105, 118, 629
BspANI GGCC 3 cut(s) 5, 61, 491
BspCNI CTCAG 1 cut(s) 496
BspHI TCATGA 1 cut(s) 604
BspLI GGNNCC 4 cut(s) 30, 212, 307, 848
BspMI ACCTGC 1 cut(s) 858
BspPI GGATC 1 cut(s) 796
BspT107I GGYRCC 1 cut(s) 28
BspTI CTTAAG 1 cut(s) 898
BsrFI RCCGGY 1 cut(s) 61
BsrGI TGTACA 1 cut(s) 768
BsrI ACTGG 2 cut(s) 309, 822
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 811
BssMI GATC 3 cut(s) 619, 788, 859
BssNI GRCGYC 1 cut(s) 264
Bst2UI CCWGG 2 cut(s) 343, 433
Bst4CI ACNGT 3 cut(s) 28, 79, 777
Bst6I CTCTTC 1 cut(s) 795
BstACI GRCGYC 1 cut(s) 264
BstAFI CTTAAG 1 cut(s) 898
BstAUI TGTACA 1 cut(s) 768
BstDEI CTNAG 2 cut(s) 413, 504
BstF5I GGATG 1 cut(s) 202
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 3 cut(s) 622, 791, 862
BstMBI GATC 3 cut(s) 619, 788, 859
BstMWI GCNNNNNNNGC 2 cut(s) 58, 423
BstNI CCWGG 2 cut(s) 343, 433
BstSCI CCNGG 4 cut(s) 341, 431, 744, 811
BstV1I GCAGC 2 cut(s) 296, 581
BstV2I GAAGAC 2 cut(s) 118, 282
BstX2I RGATCY 2 cut(s) 619, 859
BstYI RGATCY 2 cut(s) 619, 859
BsuI GTATCC 1 cut(s) 313
BsuRI GGCC 3 cut(s) 5, 61, 491
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 4 cut(s) 84, 136, 316, 773
BveI ACCTGC 1 cut(s) 858
CciI TCATGA 1 cut(s) 604
CfoI GCGC 1 cut(s) 54
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 4 cut(s) 151, 211, 489, 847
CseI GACGC 1 cut(s) 455
Csp6I GTAC 1 cut(s) 769
CviAII CATG 2 cut(s) 381, 605
CviJI RGCY 8 cut(s) 5, 61, 287, 306, 426, 491, 503, 784
CviKI_1 RGCY 8 cut(s) 5, 61, 287, 306, 426, 491, 503, 784
CviQI GTAC 1 cut(s) 769
DdeI CTNAG 2 cut(s) 413, 504
DpnI GATC 3 cut(s) 621, 790, 861
DpnII GATC 3 cut(s) 619, 788, 859
DraI TTTAAA 2 cut(s) 667, 892
DrdI GACNNNNNNGTC 1 cut(s) 269
DseDI GACNNNNNNGTC 1 cut(s) 269
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 795
EarI CTCTTC 1 cut(s) 795
EciI GGCGGA 1 cut(s) 133
Eco32I GATATC 1 cut(s) 256
Eco47I GGWCC 3 cut(s) 151, 211, 847
Eco57I CTGAAG 1 cut(s) 112
EcoO109I RGGNCCY 3 cut(s) 151, 211, 847
EcoRII CCWGG 2 cut(s) 341, 431
EcoRV GATATC 1 cut(s) 256
FaeI CATG 2 cut(s) 384, 608
FaqI GGGAC 4 cut(s) 98, 407, 561, 860
FatI CATG 2 cut(s) 380, 604
Fnu4HI GCNGC 4 cut(s) 106, 285, 570, 630
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 4 cut(s) 106, 285, 570, 630
FspBI CTAG 2 cut(s) 623, 857
GlaI GCGC 1 cut(s) 53
GluI GCNGC 4 cut(s) 106, 285, 570, 630
GsuI CTGGAG 1 cut(s) 292
HaeII RGCGCY 1 cut(s) 55
HaeIII GGCC 3 cut(s) 5, 61, 491
HapII CCGG 5 cut(s) 62, 500, 745, 813, 880
HgaI GACGC 1 cut(s) 455
HhaI GCGC 1 cut(s) 54
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 2 cut(s) 384, 608
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 4 cut(s) 377, 519, 755, 883
HpaII CCGG 5 cut(s) 62, 500, 745, 813, 880
Hpy166II GTNNAC 4 cut(s) 67, 138, 771, 824
Hpy188I TCNGA 2 cut(s) 376, 735
Hpy188III TCNNGA 6 cut(s) 469, 479, 523, 605, 623, 863
Hpy8I GTNNAC 4 cut(s) 67, 138, 771, 824
Hpy99I CGWCG 3 cut(s) 28, 37, 40
HpyAV CCTTC 1 cut(s) 430
HpyCH4III ACNGT 3 cut(s) 28, 79, 777
HpyCH4IV ACGT 4 cut(s) 69, 220, 264, 751
HpyCH4V TGCA 3 cut(s) 284, 359, 730
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 423
HpyF3I CTNAG 2 cut(s) 413, 504
HpySE526I ACGT 4 cut(s) 69, 220, 264, 751
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 2 cut(s) 384, 608
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 3 cut(s) 619, 788, 859
LmnI GCTCC 1 cut(s) 311
Lsp1109I GCAGC 2 cut(s) 296, 581
LweI GCATC 1 cut(s) 739
MaeI CTAG 2 cut(s) 623, 857
MaeII ACGT 4 cut(s) 69, 220, 264, 751
MalI GATC 3 cut(s) 621, 790, 861
MboI GATC 3 cut(s) 619, 788, 859
MboII GAAGA 6 cut(s) 83, 118, 182, 227, 287, 812
MflI RGATCY 2 cut(s) 619, 859
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 3 cut(s) 184, 590, 795
MlyI GAGTC 1 cut(s) 764
MseI TTAA 7 cut(s) 593, 636, 666, 705, 794, 891, 899
MspCI CTTAAG 1 cut(s) 898
MspI CCGG 5 cut(s) 62, 500, 745, 813, 880
MspR9I CCNGG 4 cut(s) 343, 433, 746, 813
MssI GTTTAAAC 1 cut(s) 667
MvaI CCWGG 2 cut(s) 343, 433
MwoI GCNNNNNNNGC 2 cut(s) 58, 423
NciI CCSGG 2 cut(s) 746, 813
NdeII GATC 3 cut(s) 619, 788, 859
NlaIII CATG 2 cut(s) 384, 608
NlaIV GGNNCC 4 cut(s) 30, 212, 307, 848
PagI TCATGA 1 cut(s) 604
PcsI WCGNNNNNNNCGW 3 cut(s) 32, 44, 270
PfeI GAWTC 3 cut(s) 377, 519, 883
PflMI CCANNNNNTGG 1 cut(s) 302
PkrI GCNGC 4 cut(s) 107, 286, 571, 631
PleI GAGTC 1 cut(s) 763
PmeI GTTTAAAC 1 cut(s) 667
PpsI GAGTC 1 cut(s) 763
PpuMI RGGWCCY 3 cut(s) 151, 211, 847
PshBI ATTAAT 1 cut(s) 794
Psp1406I AACGTT 1 cut(s) 69
Psp5II RGGWCCY 3 cut(s) 151, 211, 847
Psp6I CCWGG 2 cut(s) 341, 431
PspGI CCWGG 2 cut(s) 341, 431
PspN4I GGNNCC 4 cut(s) 30, 212, 307, 848
PspPI GGNCC 4 cut(s) 151, 211, 489, 847
PspPPI RGGWCCY 3 cut(s) 151, 211, 847
PsuI RGATCY 2 cut(s) 619, 859
RsaI GTAC 1 cut(s) 770
RsaNI GTAC 1 cut(s) 769
SaqAI TTAA 7 cut(s) 593, 636, 666, 705, 794, 891, 899
SatI GCNGC 4 cut(s) 106, 285, 570, 630
Sau3AI GATC 3 cut(s) 619, 788, 859
Sau96I GGNCC 4 cut(s) 151, 211, 489, 847
SchI GAGTC 1 cut(s) 764
ScrFI CCNGG 4 cut(s) 343, 433, 746, 813
SduI GDGCHC 1 cut(s) 204
SfaNI GCATC 1 cut(s) 739
SinI GGWCC 3 cut(s) 151, 211, 847
SmlI CTYRAG 1 cut(s) 898
SmoI CTYRAG 1 cut(s) 898
Sse9I AATT 3 cut(s) 184, 590, 795
SsiI CCGC 3 cut(s) 105, 118, 629
SspMI CTAG 2 cut(s) 623, 857
StyD4I CCNGG 4 cut(s) 341, 431, 744, 811
TaaI ACNGT 3 cut(s) 28, 79, 777
TaiI ACGT 4 cut(s) 72, 223, 267, 754
TaqI TCGA 3 cut(s) 258, 273, 715
TasI AATT 3 cut(s) 184, 590, 795
TatI WGTACW 1 cut(s) 768
TauI GCSGC 2 cut(s) 108, 632
TfiI GAWTC 3 cut(s) 377, 519, 883
Tru1I TTAA 7 cut(s) 593, 636, 666, 705, 794, 891, 899
Tru9I TTAA 7 cut(s) 593, 636, 666, 705, 794, 891, 899
TscAI CASTG 4 cut(s) 84, 136, 316, 780
TseI GCWGC 2 cut(s) 284, 569
TspDTI ATGAA 5 cut(s) 174, 237, 369, 572, 660
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 4 cut(s) 84, 136, 316, 780
Van91I CCANNNNNTGG 1 cut(s) 302
Vha464I CTTAAG 1 cut(s) 898
VpaK11BI GGWCC 3 cut(s) 151, 211, 847
VspI ATTAAT 1 cut(s) 794
XapI RAATTY 1 cut(s) 184
XbaI TCTAGA 1 cut(s) 622
XspI CTAG 2 cut(s) 623, 857
ZraI GACGTC 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.