FvH4_1g05010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000544
Physical Location & Seq
Reverse (-)
2666802 .. 2668137
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05010.t1

Sequence Viewer

Length: 690 bp
ATGGGTAAACGACGTCGCATCAAGAAGCTCTGTGCTGAACTTGATGTAGCCGAGGACAAGTTTGGAGAGAAAGAGCCGATCAGTGAGGAAATTGAAGAGGGAAGTCAAGAGGCTGATGAAGAGGTTGAAAAATCAGGGTCTGTTCTTGATTTTGCAATTGGGATTGCAAACTCTCTGATCCCGAACTCTCATTGTATGTTCCAGTTCCAAAACTTGTATTTCCACAAGTTTCTCCAAAACAGGGAGGACATCACCGCCTTTCCAGTGCTTGCTGTTCAGAACCTCCGTCGGCTTCAGAATGTCACTTATAAGGAGAGGGAGCGCAAATGGACACAGGCATACAAAAGTTGGGTACAGGACCACTACCCCGAGGGGGGAATTGATTTGGAAACAACCTGTAGTGAGGAGATTTATGCTTGGAGGGCCTTCAACTATAGGTTCTACCGAGATGACCCAGTAGATGAGGCTGACCTTGTCAGGACCCTCATCTCCCACTTCAACGAATGCAGGGCCAAAGATATTCCTGCCTCAGCTACATTTGACCTCAAGCAGGTCGGGGAGGTGGTTTTCAGCTTGTTTCCAGATATCTACACCGATCTCTTCGACTTCCTGTACGAGTGTAATGTCTATCTTGATTTCTCTGCCTGCCGGACTTACTACAGGGATCCTGTTGTTGTTGTTGCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

26.83

Weight (kDa)

4.75

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
AatII GACGTC 1 cut(s) 16
Acc36I ACCTGC 1 cut(s) 541
AciI CCGC 1 cut(s) 255
AclWI GGATC 3 cut(s) 172, 659, 672
AcuI CTGAAG 1 cut(s) 278
AcyI GRCGYC 1 cut(s) 13
AfaI GTAC 2 cut(s) 354, 614
AfiI CCNNNNNNNGG 4 cut(s) 241, 373, 374, 550
AgsI TTSAA 4 cut(s) 95, 128, 430, 499
AluBI AGCT 3 cut(s) 28, 533, 573
AluI AGCT 3 cut(s) 28, 533, 573
AlwI GGATC 3 cut(s) 172, 659, 672
AlwNI CAGNNNCTG 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 368
AoxI GGCC 2 cut(s) 423, 510
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 4 cut(s) 358, 423, 480, 510
AsuHPI GGTGA 1 cut(s) 244
AvaI CYCGRG 1 cut(s) 368
AvaII GGWCC 2 cut(s) 358, 480
BamHI GGATCC 1 cut(s) 664
BbvCI CCTCAGC 1 cut(s) 529
BfmI CTRYAG 3 cut(s) 397, 433, 658
BfuAI ACCTGC 1 cut(s) 541
Bme18I GGWCC 2 cut(s) 358, 480
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 4 cut(s) 358, 423, 480, 510
BmiI GGNNCC 2 cut(s) 482, 666
BmrI ACTGGG 1 cut(s) 449
BmsI GCATC 1 cut(s) 27
BmuI ACTGGG 1 cut(s) 449
Bpu10I CCTNAGC 1 cut(s) 529
BpuEI CTTGAG 1 cut(s) 530
BsaHI GRCGYC 1 cut(s) 13
BsaJI CCNNGG 2 cut(s) 51, 369
Bsc4I CCNNNNNNNGG 4 cut(s) 241, 373, 374, 550
Bse1I ACTGG 3 cut(s) 202, 263, 455
BseDI CCNNGG 2 cut(s) 51, 369
BseLI CCNNNNNNNGG 4 cut(s) 241, 373, 374, 550
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 3 cut(s) 202, 263, 455
BseRI GAGGAG 1 cut(s) 419
BshFI GGCC 2 cut(s) 425, 512
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 1 cut(s) 649
BslI CCNNNNNNNGG 4 cut(s) 241, 373, 374, 550
BsmI GAATGC 1 cut(s) 509
BsnI GGCC 2 cut(s) 425, 512
BsoBI CYCGRG 1 cut(s) 368
Bsp143I GATC 4 cut(s) 78, 177, 595, 664
BspACI CCGC 1 cut(s) 255
BspANI GGCC 2 cut(s) 425, 512
BspCNI CTCAG 1 cut(s) 542
BspLI GGNNCC 2 cut(s) 482, 666
BspMI ACCTGC 1 cut(s) 541
BspPI GGATC 3 cut(s) 172, 659, 672
BsrI ACTGG 3 cut(s) 202, 263, 455
BssECI CCNNGG 2 cut(s) 51, 369
BssMI GATC 4 cut(s) 78, 177, 595, 664
BssNI GRCGYC 1 cut(s) 13
Bst6I CTCTTC 3 cut(s) 90, 114, 605
BstACI GRCGYC 1 cut(s) 13
BstC8I GCNNGC 2 cut(s) 270, 646
BstDEI CTNAG 1 cut(s) 529
BstENI CCTNNNNNAGG 1 cut(s) 548
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 4 cut(s) 81, 180, 598, 667
BstMBI GATC 4 cut(s) 78, 177, 595, 664
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstSFI CTRYAG 3 cut(s) 397, 433, 658
BstX2I RGATCY 1 cut(s) 664
BstYI RGATCY 1 cut(s) 664
BsuRI GGCC 2 cut(s) 425, 512
BtsIMutI CAGTG 2 cut(s) 88, 270
BveI ACCTGC 1 cut(s) 541
Cac8I GCNNGC 2 cut(s) 270, 646
CaiI CAGNNNCTG 1 cut(s) 140
CfoI GCGC 1 cut(s) 324
Cfr13I GGNCC 4 cut(s) 358, 423, 480, 510
Csp6I GTAC 2 cut(s) 353, 613
CviQI GTAC 2 cut(s) 353, 613
DdeI CTNAG 1 cut(s) 529
DpnI GATC 4 cut(s) 80, 179, 597, 666
DpnII GATC 4 cut(s) 78, 177, 595, 664
Eam1104I CTCTTC 3 cut(s) 90, 114, 605
EarI CTCTTC 3 cut(s) 90, 114, 605
Eco32I GATATC 1 cut(s) 586
Eco47I GGWCC 2 cut(s) 358, 480
Eco57I CTGAAG 1 cut(s) 278
Eco88I CYCGRG 1 cut(s) 368
EcoNI CCTNNNNNAGG 1 cut(s) 548
EcoO109I RGGNCCY 2 cut(s) 423, 480
EcoRV GATATC 1 cut(s) 586
FaiI YATR 5 cut(s) 197, 309, 340, 414, 435
GlaI GCGC 1 cut(s) 323
HaeIII GGCC 2 cut(s) 425, 512
HapII CCGG 1 cut(s) 649
HhaI GCGC 1 cut(s) 324
Hin1I GRCGYC 1 cut(s) 13
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HpaII CCGG 1 cut(s) 649
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 8
Hpy188I TCNGA 3 cut(s) 177, 279, 297
Hpy188III TCNNGA 7 cut(s) 22, 107, 146, 181, 478, 581, 632
Hpy8I GTNNAC 1 cut(s) 8
Hpy99I CGWCG 3 cut(s) 15, 18, 291
HpyAV CCTTC 1 cut(s) 436
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 3 cut(s) 155, 167, 507
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 1 cut(s) 529
HpySE526I ACGT 1 cut(s) 13
Hsp92I GRCGYC 1 cut(s) 13
HspAI GCGC 1 cut(s) 322
Kzo9I GATC 4 cut(s) 78, 177, 595, 664
LmnI GCTCC 1 cut(s) 319
LweI GCATC 1 cut(s) 27
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 1 cut(s) 301
MalI GATC 4 cut(s) 80, 179, 597, 666
MboI GATC 4 cut(s) 78, 177, 595, 664
MboII GAAGA 3 cut(s) 107, 131, 592
MfeI CAATTG 1 cut(s) 156
MflI RGATCY 1 cut(s) 664
MluCI AATT 3 cut(s) 90, 156, 378
MseI TTAA 1 cut(s) 688
MspI CCGG 1 cut(s) 649
MunI CAATTG 1 cut(s) 156
Mva1269I GAATGC 1 cut(s) 509
MwoI GCNNNNNNNGC 1 cut(s) 422
NdeII GATC 4 cut(s) 78, 177, 595, 664
NlaIV GGNNCC 2 cut(s) 482, 666
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 301
PctI GAATGC 1 cut(s) 509
PflFI GACNNNGTC 1 cut(s) 473
PpuMI RGGWCCY 1 cut(s) 480
PsiI TTATAA 1 cut(s) 309
Psp5II RGGWCCY 1 cut(s) 480
PspN4I GGNNCC 2 cut(s) 482, 666
PspPI GGNCC 4 cut(s) 358, 423, 480, 510
PspPPI RGGWCCY 1 cut(s) 480
PstNI CAGNNNCTG 1 cut(s) 140
PsuI RGATCY 1 cut(s) 664
PsyI GACNNNGTC 1 cut(s) 473
RsaI GTAC 2 cut(s) 354, 614
RsaNI GTAC 2 cut(s) 353, 613
SaqAI TTAA 1 cut(s) 688
Sau3AI GATC 4 cut(s) 78, 177, 595, 664
Sau96I GGNCC 4 cut(s) 358, 423, 480, 510
SfaNI GCATC 1 cut(s) 27
SfcI CTRYAG 3 cut(s) 397, 433, 658
SinI GGWCC 2 cut(s) 358, 480
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 3 cut(s) 90, 156, 378
SsiI CCGC 1 cut(s) 255
TaiI ACGT 1 cut(s) 16
TaqI TCGA 1 cut(s) 603
TasI AATT 3 cut(s) 90, 156, 378
Tru1I TTAA 1 cut(s) 688
Tru9I TTAA 1 cut(s) 688
TscAI CASTG 2 cut(s) 88, 270
TseFI GTSAC 1 cut(s) 301
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 1 cut(s) 132
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 2 cut(s) 88, 270
Tth111I GACNNNGTC 1 cut(s) 473
VpaK11BI GGWCC 2 cut(s) 358, 480
XagI CCTNNNNNAGG 1 cut(s) 548
ZraI GACGTC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.