Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000428

Physical Location & Seq

Genomic Coordinates Reverse (-)

5174512 .. 5175910

Gene Structure 1399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g09661.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGCAAACCCTGATAACAAAAGGCTCAAAAAGCAAGACCATGAGCAGGTTGATCAAAACGCCATGGCCGCGGACACATTGCTACCTCACCTTCCAGACCTTATTCTTGAAAAGATTTTCCGACTCATTCCCACAAAACTTGCCATACGCTCAAGCATTGTTTCCAAACAATGGGCAAGCGTGTGGTCTTTGGGAGTCCCCTTCTTATATTTCGATGACGAGGGAGAATCCGATGACCGCAGGAAGCTGTTGTTCATGGACTTCTTTGAAACATTTTGAGAGAACCAAGCTGTTGGAGTTGGACAGGTTCATGCTTCGAATGAGATATGATTCTCAAGTAATAGACTCGACAAGATTAGACAAGTGGTTTAGTTTTGTGGTTGATAGACGCGCCAAGGAGTTATATATCAGCATTCGAAGTTCAGTCGTCAAAGAAACCACATACAACTGCATACCCCATACCATTCTCAATGCGCAATATCTTACTCATCTGAATCTGCAGCATGTCCGAATACCGGAGATATTTCCTCAACTAAGTTCAATCTACTTGAGTGATGAATGCGTCAAGTTGAAAAATATCGGTGTTTGTGCTCACCATTCGGACAAGACTAGCTTCAGAATGCCCGGAAAATGTCCACATAATTTGAAGGCCATTATTGATATTCCAAATCTCCTACATCTTACATACAATGGTTATTTGCTGACTAATGATGTAATCTCTGTGAACGCTCGAAAGCGATTTGATGCAAGTCTCACGCTTAATTGGGATGATGATGACCAAGGTCTAGAACCCCCAAGGACACATTTTCCAACTTGGAGAAATCTTCTTCAAAACTTTAGTTGCTGCAATGAAGTAGAGCTAGATATCCGTCATGATGCCGTTGCTAGAGCTCTCACATTTCCAGAAAATTTCAGGAAGACATTCTCTCCACCGTTACTTCATATCCAGCGTTTAAAGGTCTTCATTGTGCGTCTTCGTTGTCCGCAAACAATGGCCGGAATTTCTGCCTTCACGGACTCTTTGCGTTGGATGGCACCAAATGCACTTATTTCATTAGCTTACTGGGACTATGGTGAGTTTGATTCGGACTATGGTGAGTTTGATTCTTCAGGAGAAGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

375

Amino Acids

43.37

Weight (kDa)

8.42

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica	MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica	Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis	pycom17g10120
rosa_chinensis	RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora	Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii	Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa	Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha	Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana	Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	474
Acc36I	ACCTGC	1 cut(s)	36
AccB1I	GGYRCC	1 cut(s)	1033
AccB7I	CCANNNNNTGG	1 cut(s)	170
AccII	CGCG	2 cut(s)	70, 390
AciI	CCGC	4 cut(s)	68, 70, 237, 983
AcoI	YGGCCR	2 cut(s)	65, 993
AcsI	RAATTY	2 cut(s)	907, 999
AcuI	CTGAAG	2 cut(s)	598, 1092
AfiI	CCNNNNNNNGG	3 cut(s)	45, 170, 514
AgsI	TTSAA	6 cut(s)	109, 268, 540, 571, 646, 830
AluBI	AGCT	6 cut(s)	246, 289, 612, 859, 890, 1058
AluI	AGCT	6 cut(s)	246, 289, 612, 859, 890, 1058
Alw21I	GWGCWC	2 cut(s)	592, 892
Alw26I	GTCTC	1 cut(s)	755
AoxI	GGCC	3 cut(s)	65, 648, 993
ApeKI	GCWGC	2 cut(s)	499, 843
ApoI	RAATTY	2 cut(s)	907, 999
Asp700I	GAANNNNTTC	1 cut(s)	920
AspLEI	GCGC	2 cut(s)	392, 475
AsuC2I	CCSGG	1 cut(s)	624
AsuHPI	GGTGA	4 cut(s)	79, 584, 1085, 1106
AsuII	TTCGAA	2 cut(s)	316, 415
BanI	GGYRCC	1 cut(s)	1033
BanII	GRGCYC	1 cut(s)	892
BbsI	GAAGAC	3 cut(s)	923, 952, 965
Bbv12I	GWGCWC	2 cut(s)	592, 892
BbvI	GCAGC	2 cut(s)	511, 830
BccI	CCATC	1 cut(s)	1024
BceAI	ACGGC	1 cut(s)	863
BclI	TGATCA	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	624
BcoDI	GTCTC	1 cut(s)	755
BfaI	CTAG	4 cut(s)	609, 785, 860, 885
BfmI	CTRYAG	1 cut(s)	497
BfuAI	ACCTGC	1 cut(s)	36
BisI	GCNGC	3 cut(s)	68, 500, 844
BlsI	GCNGC	3 cut(s)	69, 501, 845
Bme1390I	CCNGG	1 cut(s)	624
BmiI	GGNNCC	1 cut(s)	1035
BmrFI	CCNGG	1 cut(s)	624
BmrI	ACTGGG	1 cut(s)	1072
BmsI	GCATC	2 cut(s)	733, 865
BmuI	ACTGGG	1 cut(s)	1072
BoxI	GACNNNNGTC	1 cut(s)	780
BpiI	GAAGAC	3 cut(s)	923, 952, 965
Bpu14I	TTCGAA	2 cut(s)	316, 415
BpuEI	CTTGAG	3 cut(s)	135, 318, 568
BpuMI	CCSGG	1 cut(s)	624
BsaJI	CCNNGG	5 cut(s)	62, 68, 393, 778, 794
BsaWI	WCCGGW	1 cut(s)	514
BsaXI	ACNNNNNCTCC	2 cut(s)	910, 940
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 170, 514
Bse1I	ACTGG	1 cut(s)	1067
Bse3DI	GCAATG	2 cut(s)	76, 853
BseDI	CCNNGG	5 cut(s)	62, 68, 393, 778, 794
BseGI	GGATG	2 cut(s)	772, 1035
BseLI	CCNNNNNNNGG	3 cut(s)	45, 170, 514
BseMI	GCAATG	2 cut(s)	76, 853
BseNI	ACTGG	1 cut(s)	1067
BseXI	GCAGC	2 cut(s)	511, 830
Bsh1236I	CGCG	2 cut(s)	70, 390
BshFI	GGCC	3 cut(s)	67, 650, 995
BshNI	GGYRCC	1 cut(s)	1033
BsiHKAI	GWGCWC	2 cut(s)	592, 892
BsiSI	CCGG	3 cut(s)	515, 624, 996
BslFI	GGGAC	2 cut(s)	181, 1079
BslI	CCNNNNNNNGG	3 cut(s)	45, 170, 514
BsmAI	GTCTC	1 cut(s)	755
BsmFI	GGGAC	2 cut(s)	181, 1079
BsmI	GAATGC	3 cut(s)	411, 563, 624
BsnI	GGCC	3 cut(s)	67, 650, 995
Bsp119I	TTCGAA	2 cut(s)	316, 415
Bsp1286I	GDGCHC	2 cut(s)	592, 892
Bsp143I	GATC	1 cut(s)	51
Bsp19I	CCATGG	1 cut(s)	62
BspACI	CCGC	4 cut(s)	68, 70, 237, 983
BspANI	GGCC	3 cut(s)	67, 650, 995
BspFNI	CGCG	2 cut(s)	70, 390
BspHI	TCATGA	1 cut(s)	871
BspLI	GGNNCC	1 cut(s)	1035
BspMAI	CTGCAG	1 cut(s)	501
BspMI	ACCTGC	1 cut(s)	36
BspT104I	TTCGAA	2 cut(s)	316, 415
BspT107I	GGYRCC	1 cut(s)	1033
BsrDI	GCAATG	2 cut(s)	76, 853
BsrI	ACTGG	1 cut(s)	1067
BssECI	CCNNGG	5 cut(s)	62, 68, 393, 778, 794
BssMI	GATC	1 cut(s)	51
BssT1I	CCWWGG	4 cut(s)	62, 393, 778, 794
Bst4CI	ACNGT	1 cut(s)	933
BstAPI	GCANNNNNTGC	1 cut(s)	1040
BstBI	TTCGAA	2 cut(s)	316, 415
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	1 cut(s)	533
BstDSI	CCRYGG	2 cut(s)	62, 68
BstF5I	GGATG	2 cut(s)	772, 1035
BstFNI	CGCG	2 cut(s)	70, 390
BstHHI	GCGC	2 cut(s)	392, 475
BstKTI	GATC	1 cut(s)	54
BstMAI	GTCTC	1 cut(s)	755
BstMBI	GATC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 67, 1040
BstNSI	RCATGY	1 cut(s)	506
BstPAI	GACNNNNGTC	1 cut(s)	780
BstSCI	CCNGG	1 cut(s)	622
BstSFI	CTRYAG	1 cut(s)	497
BstUI	CGCG	2 cut(s)	70, 390
BstV1I	GCAGC	2 cut(s)	511, 830
BstV2I	GAAGAC	3 cut(s)	923, 952, 965
BstXI	CCANNNNNNTGG	1 cut(s)	292
BsuRI	GGCC	3 cut(s)	67, 650, 995
BtgI	CCRYGG	2 cut(s)	62, 68
BtsCI	GGATG	2 cut(s)	772, 1035
BveI	ACCTGC	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	177
CciI	TCATGA	1 cut(s)	871
CfoI	GCGC	2 cut(s)	392, 475
Cfr42I	CCGCGG	1 cut(s)	71
CseI	GACGC	3 cut(s)	396, 550, 959
CspCI	CAANNNNNGTGG	4 cut(s)	120, 155, 624, 659
CviAII	CATG	6 cut(s)	40, 63, 255, 310, 503, 872
DdeI	CTNAG	1 cut(s)	533
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
DraI	TTTAAA	1 cut(s)	954
EaeI	YGGCCR	2 cut(s)	65, 993
Ecl136II	GAGCTC	1 cut(s)	890
Eco130I	CCWWGG	4 cut(s)	62, 393, 778, 794
Eco24I	GRGCYC	1 cut(s)	892
Eco32I	GATATC	1 cut(s)	865
Eco53kI	GAGCTC	1 cut(s)	890
Eco57I	CTGAAG	2 cut(s)	598, 1092
EcoICRI	GAGCTC	1 cut(s)	890
EcoRV	GATATC	1 cut(s)	865
EcoT14I	CCWWGG	4 cut(s)	62, 393, 778, 794
EcoT38I	GRGCYC	1 cut(s)	892
ErhI	CCWWGG	4 cut(s)	62, 393, 778, 794
FaeI	CATG	6 cut(s)	43, 66, 258, 313, 506, 875
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FaqI	GGGAC	2 cut(s)	181, 1079
FatI	CATG	6 cut(s)	39, 62, 254, 309, 502, 871
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	3 cut(s)	68, 500, 844
FokI	GGATG	2 cut(s)	779, 1042
FriOI	GRGCYC	1 cut(s)	892
Fsp4HI	GCNGC	3 cut(s)	68, 500, 844
FspBI	CTAG	4 cut(s)	609, 785, 860, 885
FspI	TGCGCA	1 cut(s)	474
GlaI	GCGC	2 cut(s)	391, 474
GluI	GCNGC	3 cut(s)	68, 500, 844
HaeIII	GGCC	3 cut(s)	67, 650, 995
HapII	CCGG	3 cut(s)	515, 624, 996
HgaI	GACGC	3 cut(s)	396, 550, 959
HhaI	GCGC	2 cut(s)	392, 475
Hin1II	CATG	6 cut(s)	43, 66, 258, 313, 506, 875
Hin6I	GCGC	2 cut(s)	390, 473
HinP1I	GCGC	2 cut(s)	390, 473
HinfI	GANTC	9 cut(s)	122, 194, 226, 329, 344, 493, 1016, 1082, 1103
HpaII	CCGG	3 cut(s)	515, 624, 996
HphI	GGTGA	4 cut(s)	79, 584, 1085, 1106
Hpy166II	GTNNAC	2 cut(s)	635, 724
Hpy188I	TCNGA	7 cut(s)	121, 231, 492, 509, 601, 617, 1087
Hpy188III	TCNNGA	7 cut(s)	94, 106, 785, 872, 902, 913, 1110
Hpy8I	GTNNAC	2 cut(s)	635, 724
HpyAV	CCTTC	4 cut(s)	100, 210, 640, 1018
HpyCH4III	ACNGT	1 cut(s)	933
HpyCH4V	TGCA	6 cut(s)	4, 450, 499, 746, 846, 1043
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 67, 1040
HpyF3I	CTNAG	1 cut(s)	533
Hsp92II	CATG	6 cut(s)	43, 66, 258, 313, 506, 875
HspAI	GCGC	2 cut(s)	390, 473
Ksp22I	TGATCA	1 cut(s)	51
KspI	CCGCGG	1 cut(s)	71
Kzo9I	GATC	1 cut(s)	51
Lsp1109I	GCAGC	2 cut(s)	511, 830
LweI	GCATC	2 cut(s)	733, 865
MaeI	CTAG	4 cut(s)	609, 785, 860, 885
MaeIII	GTNAC	1 cut(s)	933
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	6 cut(s)	815, 818, 928, 952, 965, 1098
MhlI	GDGCHC	2 cut(s)	592, 892
MluCI	AATT	4 cut(s)	640, 760, 907, 999
MlyI	GAGTC	4 cut(s)	116, 203, 338, 1010
MmeI	TCCRAC	5 cut(s)	144, 273, 279, 833, 1007
MnlI	CCTC	3 cut(s)	95, 213, 537
MroXI	GAANNNNTTC	1 cut(s)	920
MseI	TTAA	2 cut(s)	759, 953
MspA1I	CMGCKG	1 cut(s)	70
MspI	CCGG	3 cut(s)	515, 624, 996
MspR9I	CCNGG	1 cut(s)	624
Mva1269I	GAATGC	3 cut(s)	411, 563, 624
MvnI	CGCG	2 cut(s)	70, 390
MwoI	GCNNNNNNNGC	3 cut(s)	30, 67, 1040
NciI	CCSGG	1 cut(s)	624
NcoI	CCATGG	1 cut(s)	62
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	6 cut(s)	43, 66, 258, 313, 506, 875
NlaIV	GGNNCC	1 cut(s)	1035
NsbI	TGCGCA	1 cut(s)	474
NspI	RCATGY	1 cut(s)	506
NspV	TTCGAA	2 cut(s)	316, 415
PagI	TCATGA	1 cut(s)	871
PctI	GAATGC	3 cut(s)	411, 563, 624
PdmI	GAANNNNTTC	1 cut(s)	920
PfeI	GAWTC	5 cut(s)	226, 329, 493, 1082, 1103
PflMI	CCANNNNNTGG	1 cut(s)	170
PkrI	GCNGC	3 cut(s)	69, 501, 845
PleI	GAGTC	4 cut(s)	116, 202, 338, 1010
PpsI	GAGTC	4 cut(s)	116, 202, 338, 1010
PshAI	GACNNNNGTC	1 cut(s)	780
Psp124BI	GAGCTC	1 cut(s)	892
PspN4I	GGNNCC	1 cut(s)	1035
PstI	CTGCAG	1 cut(s)	501
SacI	GAGCTC	1 cut(s)	892
SacII	CCGCGG	1 cut(s)	71
SaqAI	TTAA	2 cut(s)	759, 953
SatI	GCNGC	3 cut(s)	68, 500, 844
Sau3AI	GATC	1 cut(s)	51
SchI	GAGTC	4 cut(s)	116, 203, 338, 1010
ScrFI	CCNGG	1 cut(s)	624
SduI	GDGCHC	2 cut(s)	592, 892
SfaNI	GCATC	2 cut(s)	733, 865
SfcI	CTRYAG	1 cut(s)	497
Sfr303I	CCGCGG	1 cut(s)	71
SfuI	TTCGAA	2 cut(s)	316, 415
SgrBI	CCGCGG	1 cut(s)	71
SmlI	CTYRAG	3 cut(s)	150, 333, 547
SmoI	CTYRAG	3 cut(s)	150, 333, 547
Sse9I	AATT	4 cut(s)	640, 760, 907, 999
SsiI	CCGC	4 cut(s)	68, 70, 237, 983
SspMI	CTAG	4 cut(s)	609, 785, 860, 885
SstI	GAGCTC	1 cut(s)	892
StyD4I	CCNGG	1 cut(s)	622
StyI	CCWWGG	4 cut(s)	62, 393, 778, 794
TaaI	ACNGT	1 cut(s)	933
TaqI	TCGA	5 cut(s)	212, 316, 347, 415, 730
TasI	AATT	4 cut(s)	640, 760, 907, 999
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	5 cut(s)	226, 329, 493, 1082, 1103
Tru1I	TTAA	2 cut(s)	759, 953
Tru9I	TTAA	2 cut(s)	759, 953
TseI	GCWGC	2 cut(s)	499, 843
TspDTI	ATGAA	7 cut(s)	243, 298, 570, 864, 929, 952, 1041
TspGWI	ACGGA	2 cut(s)	857, 1028
Van91I	CCANNNNNTGG	1 cut(s)	170
XapI	RAATTY	2 cut(s)	907, 999
XbaI	TCTAGA	1 cut(s)	784
XceI	RCATGY	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	920
XspI	CTAG	4 cut(s)	609, 785, 860, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.