FvH4_2g05841

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000428
Physical Location & Seq
Reverse (-)
4855220 .. 4856549
1330 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g05841.t1

Sequence Viewer

Length: 1278 bp
ATGGCTACCACAAAGGACCCCAGTTCGGACAGAAACCTAACATGGCAAAACCAGACAAAGGAAGATCATGATGACCAAAAGGCCACGGTTGTGGAAACAATATTAAGCCGGCCTCAGTTTCCAGATGAGATTATCTACCGAATCATTCAAGTCCTTCCTACCAAATCTGCTGTCCGTATGAGCTCTCTTTCTAAGAAATTTGAAGGTGCATGGCTCTCCCAACCTGTATTAGACTTCGACGAAGGCAACCCCCACGATGACACAACAGACAACATCATTCAGCACACAAAGTTCGTCAACATCTTGGATAAGTATTTGGACTACTTCCATGAAGATGAGAAGATAGTGACTACTATGGTAGATGAGGTATTGAGTCTTGCAGTTCGAAGAAGCGTCAAAGAGTTGGACATGAGCATTGGAGGTGATAAACAGGCAGCATTGTACTGTTTAACCCTGAAGAACCCCCTAAGTTTGGCGAAATCTATAACTACCTTAAGTTTGGAGAATGTGACGATAGATGCAGAAGAATGCAAGTCTATAATCTTCCCGTCTTTGATAACAATGTCGCTCAAAACTATGCGCCTCGGTTGCTCCTTGATATCTAGCTGCCCTTCCATCGAGTATTTGTCACTCTCTTCTTGTTCGATGCGTGATGGTTCGGCACCATTCTTAGTTTCCAATTCCAATCTCAAATCCTTGAAAGTTACGTACTGTGATTTCCAACATGTTGCAGTAGTGAAAACTAATCTGCTAGAATCTTTTACCTTTGTTTCGGAATCTTACGTTAGGCTCATCAGTTTATCCGAGTGTAGAAACTTGAAATCTTTAAGCATCCTTGCACAACACCCGCAGTACCTTTATATTACTACATGTGGACATTCTGTGAAGGCCACAGTCAGTAGCCCCAGTCTACATTATATTCAGTTTACTGGTTTTTCGAAGTACAAGCATTCCATAGAAGCTCAAAGTTTGGCTAGGGTAAAAATTACTATTCGTCACGAAGAGCTGAACGTCAACGAGCCATGGGAACATTCTTCTTTGCTGAGATATTTTCTTGAAAGCTTTGCTTCCTTCTCCGGAGAAATAGTTCTAAATATTGATCATGTTCAAGCTCAGGCTCTCATCTTTCCAGAAGATTTTAGGAATACTGTCTCTCCACCATTGCCAAACCTGAAGCATTTAAAGATTATCATCATGTCTCCAATATGGGCAGGAAATTCTGAGTTGATGGACTCATTGACTTGGATAGCACCTTCTGCAGAGATCAAAGAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

426

Amino Acids

47.94

Weight (kDa)

5.74

Isoelectric Point (pI)

46.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 121 - 292 3.9e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 661
AccI GTMKAC 1 cut(s) 910
AccIII TCCGGA 1 cut(s) 1076
AciI CCGC 1 cut(s) 848
AcsI RAATTY 2 cut(s) 197, 1216
AcuI CTGAAG 2 cut(s) 476, 1193
AfaI GTAC 4 cut(s) 443, 710, 854, 944
AfiI CCNNNNNNNGG 3 cut(s) 25, 58, 472
AflII CTTAAG 1 cut(s) 493
AflIII ACRYGT 2 cut(s) 724, 869
AgsI TTSAA 6 cut(s) 149, 203, 700, 820, 1058, 1109
AleI CACNNNNGTG 1 cut(s) 89
AloI GAACNNNNNNTCC 2 cut(s) 1071, 1103
AluBI AGCT 6 cut(s) 183, 606, 962, 1006, 1062, 1112
AluI AGCT 6 cut(s) 183, 606, 962, 1006, 1062, 1112
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 2 cut(s) 1156, 1203
Aor13HI TCCGGA 1 cut(s) 1076
AoxI GGCC 3 cut(s) 81, 110, 888
ApeKI GCWGC 2 cut(s) 434, 606
ApoI RAATTY 2 cut(s) 197, 1216
ArsI GACNNNNNNTTYG 2 cut(s) 156, 188
Asp700I GAANNNNTTC 1 cut(s) 1086
AspLEI GCGC 1 cut(s) 582
AspS9I GGNCC 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 434
AsuII TTCGAA 2 cut(s) 385, 938
AvaII GGWCC 1 cut(s) 16
BanI GGYRCC 1 cut(s) 661
BanII GRGCYC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 2 cut(s) 446, 593
BccI CCATC 3 cut(s) 623, 647, 1222
BclI TGATCA 1 cut(s) 1099
BcoDI GTCTC 2 cut(s) 1156, 1203
BfaI CTAG 3 cut(s) 603, 752, 975
BfmI CTRYAG 1 cut(s) 1257
BfrI CTTAAG 1 cut(s) 493
BisI GCNGC 2 cut(s) 435, 607
BlsI GCNGC 2 cut(s) 436, 608
Bme18I GGWCC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 16
BmiI GGNNCC 2 cut(s) 18, 663
BmrI ACTGGG 2 cut(s) 15, 900
BmsI GCATC 3 cut(s) 508, 636, 840
BmuI ACTGGG 2 cut(s) 15, 900
Bpu10I CCTNAGC 1 cut(s) 1113
Bpu14I TTCGAA 2 cut(s) 385, 938
BsaAI YACGTR 1 cut(s) 708
BsaBI GATNNNNATC 1 cut(s) 1190
BsaJI CCNNGG 3 cut(s) 84, 583, 1022
BsaWI WCCGGW 1 cut(s) 1076
BsaXI ACNNNNNCTCC 4 cut(s) 1071, 1101, 1138, 1168
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 58, 472
Bse118I RCCGGY 1 cut(s) 108
Bse1I ACTGG 3 cut(s) 21, 906, 934
Bse3DI GCAATG 1 cut(s) 1160
Bse8I GATNNNNATC 1 cut(s) 1190
BseAI TCCGGA 1 cut(s) 1076
BseDI CCNNGG 3 cut(s) 84, 583, 1022
BseGI GGATG 1 cut(s) 831
BseJI GATNNNNATC 1 cut(s) 1190
BseLI CCNNNNNNNGG 3 cut(s) 25, 58, 472
BseMI GCAATG 1 cut(s) 1160
BseMII CTCAG 4 cut(s) 128, 1034, 1127, 1212
BseNI ACTGG 3 cut(s) 21, 906, 934
BseXI GCAGC 2 cut(s) 446, 593
BshFI GGCC 3 cut(s) 83, 112, 890
BshNI GGYRCC 1 cut(s) 661
BsiHKAI GWGCWC 1 cut(s) 185
BsiSI CCGG 2 cut(s) 109, 1077
BslI CCNNNNNNNGG 3 cut(s) 25, 58, 472
BsmAI GTCTC 2 cut(s) 1156, 1203
BsmI GAATGC 2 cut(s) 533, 949
BsnI GGCC 3 cut(s) 83, 112, 890
Bsp119I TTCGAA 2 cut(s) 385, 938
Bsp1286I GDGCHC 1 cut(s) 185
Bsp13I TCCGGA 1 cut(s) 1076
Bsp143I GATC 3 cut(s) 64, 1099, 1263
Bsp19I CCATGG 1 cut(s) 1022
BspACI CCGC 1 cut(s) 848
BspANI GGCC 3 cut(s) 83, 112, 890
BspCNI CTCAG 4 cut(s) 127, 1035, 1126, 1213
BspEI TCCGGA 1 cut(s) 1076
BspHI TCATGA 1 cut(s) 67
BspLI GGNNCC 2 cut(s) 18, 663
BspMAI CTGCAG 1 cut(s) 1261
BspQI GCTCTTC 1 cut(s) 996
BspT104I TTCGAA 2 cut(s) 385, 938
BspT107I GGYRCC 1 cut(s) 661
BspTI CTTAAG 1 cut(s) 493
BsrDI GCAATG 1 cut(s) 1160
BsrFI RCCGGY 1 cut(s) 108
BsrI ACTGG 3 cut(s) 21, 906, 934
BssAI RCCGGY 1 cut(s) 108
BssECI CCNNGG 3 cut(s) 84, 583, 1022
BssMI GATC 3 cut(s) 64, 1099, 1263
BssT1I CCWWGG 1 cut(s) 1022
Bst4CI ACNGT 5 cut(s) 88, 446, 713, 895, 1150
Bst6I CTCTTC 2 cut(s) 640, 996
BstAFI CTTAAG 1 cut(s) 493
BstAPI GCANNNNNTGC 1 cut(s) 1256
BstBAI YACGTR 1 cut(s) 708
BstBI TTCGAA 2 cut(s) 385, 938
BstC8I GCNNGC 1 cut(s) 110
BstDEI CTNAG 7 cut(s) 114, 192, 467, 670, 1043, 1113, 1221
BstDSI CCRYGG 2 cut(s) 84, 1022
BstF5I GGATG 1 cut(s) 831
BstHHI GCGC 1 cut(s) 582
BstKTI GATC 3 cut(s) 67, 1102, 1266
BstMAI GTCTC 2 cut(s) 1156, 1203
BstMBI GATC 3 cut(s) 64, 1099, 1263
BstMWI GCNNNNNNNGC 2 cut(s) 588, 1256
BstNSI RCATGY 2 cut(s) 728, 873
BstSFI CTRYAG 1 cut(s) 1257
BstSNI TACGTA 1 cut(s) 708
BstV1I GCAGC 2 cut(s) 446, 593
BstXI CCANNNNNNTGG 1 cut(s) 91
BsuRI GGCC 3 cut(s) 83, 112, 890
BtgI CCRYGG 2 cut(s) 84, 1022
BtsCI GGATG 1 cut(s) 831
Cac8I GCNNGC 1 cut(s) 110
CciI TCATGA 1 cut(s) 67
CfoI GCGC 1 cut(s) 582
Cfr10I RCCGGY 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 16
CseI GACGC 1 cut(s) 382
Csp6I GTAC 4 cut(s) 442, 709, 853, 943
CviQI GTAC 4 cut(s) 442, 709, 853, 943
DdeI CTNAG 7 cut(s) 114, 192, 467, 670, 1043, 1113, 1221
DpnI GATC 3 cut(s) 66, 1101, 1265
DpnII GATC 3 cut(s) 64, 1099, 1263
DraI TTTAAA 1 cut(s) 1182
Eam1104I CTCTTC 2 cut(s) 640, 996
EarI CTCTTC 2 cut(s) 640, 996
Ecl136II GAGCTC 1 cut(s) 183
Eco105I TACGTA 1 cut(s) 708
Eco130I CCWWGG 1 cut(s) 1022
Eco24I GRGCYC 1 cut(s) 185
Eco32I GATATC 1 cut(s) 600
Eco47I GGWCC 1 cut(s) 16
Eco53kI GAGCTC 1 cut(s) 183
Eco57I CTGAAG 2 cut(s) 476, 1193
EcoICRI GAGCTC 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 16
EcoRV GATATC 1 cut(s) 600
EcoT14I CCWWGG 1 cut(s) 1022
EcoT38I GRGCYC 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 1022
FalI AAGNNNNNCTT 2 cut(s) 1051, 1083
FauI CCCGC 1 cut(s) 855
FbaI TGATCA 1 cut(s) 1099
FblI GTMKAC 1 cut(s) 910
Fnu4HI GCNGC 2 cut(s) 435, 607
FokI GGATG 1 cut(s) 818
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 2 cut(s) 435, 607
FspBI CTAG 3 cut(s) 603, 752, 975
GlaI GCGC 1 cut(s) 581
GluI GCNGC 2 cut(s) 435, 607
HaeIII GGCC 3 cut(s) 83, 112, 890
HapII CCGG 2 cut(s) 109, 1077
HgaI GACGC 1 cut(s) 382
HhaI GCGC 1 cut(s) 582
Hin6I GCGC 1 cut(s) 580
HinP1I GCGC 1 cut(s) 580
HincII GTYRAC 2 cut(s) 298, 1015
HindII GTYRAC 2 cut(s) 298, 1015
HindIII AAGCTT 1 cut(s) 1060
HinfI GANTC 5 cut(s) 141, 373, 755, 776, 1232
HpaII CCGG 2 cut(s) 109, 1077
HphI GGTGA 1 cut(s) 434
Hpy166II GTNNAC 5 cut(s) 298, 875, 911, 927, 1015
Hpy188I TCNGA 4 cut(s) 28, 775, 805, 1222
Hpy188III TCNNGA 6 cut(s) 68, 122, 998, 1055, 1077, 1130
Hpy8I GTNNAC 5 cut(s) 298, 875, 911, 927, 1015
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 7 cut(s) 164, 197, 236, 621, 880, 1081, 1263
HpyCH4III ACNGT 5 cut(s) 88, 446, 713, 895, 1150
HpyCH4IV ACGT 3 cut(s) 707, 783, 1011
HpyCH4V TGCA 7 cut(s) 209, 380, 521, 531, 731, 839, 1259
HpyF10VI GCNNNNNNNGC 2 cut(s) 588, 1256
HpyF3I CTNAG 7 cut(s) 114, 192, 467, 670, 1043, 1113, 1221
HpySE526I ACGT 3 cut(s) 707, 783, 1011
HspAI GCGC 1 cut(s) 580
Kpn2I TCCGGA 1 cut(s) 1076
KroI GCCGGC 1 cut(s) 108
KroNI GCCGGC 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 1099
Kzo9I GATC 3 cut(s) 64, 1099, 1263
LguI GCTCTTC 1 cut(s) 996
LmnI GCTCC 1 cut(s) 596
Lsp1109I GCAGC 2 cut(s) 446, 593
LweI GCATC 3 cut(s) 508, 636, 840
MaeI CTAG 3 cut(s) 603, 752, 975
MaeII ACGT 3 cut(s) 707, 783, 1011
MaeIII GTNAC 5 cut(s) 346, 508, 627, 703, 995
MalI GATC 3 cut(s) 66, 1101, 1265
MboI GATC 3 cut(s) 64, 1099, 1263
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 4 cut(s) 197, 679, 984, 1216
MlyI GAGTC 2 cut(s) 382, 1226
MmeI TCCRAC 2 cut(s) 384, 745
MnlI CCTC 4 cut(s) 123, 358, 413, 593
MroI TCCGGA 1 cut(s) 1076
MroNI GCCGGC 1 cut(s) 108
MroXI GAANNNNTTC 1 cut(s) 1086
MseI TTAA 5 cut(s) 104, 449, 494, 827, 1181
MslI CAYNNNNRTG 2 cut(s) 89, 333
MspCI CTTAAG 1 cut(s) 493
MspI CCGG 2 cut(s) 109, 1077
Mva1269I GAATGC 2 cut(s) 533, 949
MwoI GCNNNNNNNGC 2 cut(s) 588, 1256
NaeI GCCGGC 1 cut(s) 110
NcoI CCATGG 1 cut(s) 1022
NdeII GATC 3 cut(s) 64, 1099, 1263
NgoMIV GCCGGC 1 cut(s) 108
NlaIV GGNNCC 2 cut(s) 18, 663
NmuCI GTSAC 4 cut(s) 346, 508, 627, 995
NspI RCATGY 2 cut(s) 728, 873
NspV TTCGAA 2 cut(s) 385, 938
OliI CACNNNNGTG 1 cut(s) 89
PagI TCATGA 1 cut(s) 67
PciI ACATGT 2 cut(s) 724, 869
PciSI GCTCTTC 1 cut(s) 996
PctI GAATGC 2 cut(s) 533, 949
PdiI GCCGGC 1 cut(s) 110
PdmI GAANNNNTTC 1 cut(s) 1086
PfeI GAWTC 3 cut(s) 141, 755, 776
PkrI GCNGC 2 cut(s) 436, 608
PleI GAGTC 2 cut(s) 381, 1226
PpsI GAGTC 2 cut(s) 381, 1226
Ppu21I YACGTR 1 cut(s) 708
PpuMI RGGWCCY 1 cut(s) 16
PscI ACATGT 2 cut(s) 724, 869
Psp124BI GAGCTC 1 cut(s) 185
Psp5II RGGWCCY 1 cut(s) 16
PspN4I GGNNCC 2 cut(s) 18, 663
PspPI GGNCC 1 cut(s) 16
PspPPI RGGWCCY 1 cut(s) 16
PstI CTGCAG 1 cut(s) 1261
RsaI GTAC 4 cut(s) 443, 710, 854, 944
RsaNI GTAC 4 cut(s) 442, 709, 853, 943
RseI CAYNNNNRTG 2 cut(s) 89, 333
SacI GAGCTC 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 996
SaqAI TTAA 5 cut(s) 104, 449, 494, 827, 1181
SatI GCNGC 2 cut(s) 435, 607
Sau3AI GATC 3 cut(s) 64, 1099, 1263
Sau96I GGNCC 1 cut(s) 16
SchI GAGTC 2 cut(s) 382, 1226
SduI GDGCHC 1 cut(s) 185
SfaNI GCATC 3 cut(s) 508, 636, 840
SfcI CTRYAG 1 cut(s) 1257
SfuI TTCGAA 2 cut(s) 385, 938
SinI GGWCC 1 cut(s) 16
SmiMI CAYNNNNRTG 2 cut(s) 89, 333
SmlI CTYRAG 1 cut(s) 493
SmoI CTYRAG 1 cut(s) 493
SnaBI TACGTA 1 cut(s) 708
Sse9I AATT 4 cut(s) 197, 679, 984, 1216
SsiI CCGC 1 cut(s) 848
SspI AATATT 2 cut(s) 102, 1096
SspMI CTAG 3 cut(s) 603, 752, 975
SstI GAGCTC 1 cut(s) 185
StyI CCWWGG 1 cut(s) 1022
TaaI ACNGT 5 cut(s) 88, 446, 713, 895, 1150
TaiI ACGT 3 cut(s) 710, 786, 1014
TaqI TCGA 5 cut(s) 237, 385, 618, 644, 938
TasI AATT 4 cut(s) 197, 679, 984, 1216
TatI WGTACW 2 cut(s) 441, 942
TfiI GAWTC 3 cut(s) 141, 755, 776
Tru1I TTAA 5 cut(s) 104, 449, 494, 827, 1181
Tru9I TTAA 5 cut(s) 104, 449, 494, 827, 1181
TseFI GTSAC 4 cut(s) 346, 508, 627, 995
TseI GCWGC 2 cut(s) 434, 606
Tsp45I GTSAC 4 cut(s) 346, 508, 627, 995
TspDTI ATGAA 1 cut(s) 345
TspGWI ACGGA 1 cut(s) 164
Vha464I CTTAAG 1 cut(s) 493
VpaK11BI GGWCC 1 cut(s) 16
XapI RAATTY 2 cut(s) 197, 1216
XceI RCATGY 2 cut(s) 728, 873
XmiI GTMKAC 1 cut(s) 910
XmnI GAANNNNTTC 1 cut(s) 1086
XspI CTAG 3 cut(s) 603, 752, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.