FvH4_3g02580

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000428
Physical Location & Seq
Reverse (-)
1301418 .. 1303514
2097 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02580.t1

Sequence Viewer

Length: 1401 bp
ATGAGCGTCGTGAGTTCAATACGCCCTCCTTTACCTGACCTTGTTACCCATCAAATTCTCCAAATCCTTCCTACTAAAGCTGCTGTTCGCATGAGCTTCCTTTCCAAGCAATGGGATGGTGTTTGGTGTTCGACCCCAGTATTGGATTTCGACGAGGGAGATGATCCCGGTAAGTATGACAACGACCACATCGATCTTAACAAGATTCTCGAACATAGAAAGTTCATCAACATCGTGGAAAAGTGGCTGGAATTCTGTGAGCAAGAGCAGCACAAACAAGTCTTGTTGAATAAATTCAGACTTCGCATGATGAGGTACGTACCTGGAGATTATGACTCAATAGACAAATGCCTCAGTTATGTATTCGAGAGAAACGTCAAGGAGCTAGATATCAGTCTTAGAATCAGTCGATTATTTTGGGGATTTTCTTGGCAGATCCGGTTAGGATTCTACTACTGCGTATCTCGGACGACCCTTGCAAATGCAAAAACCCTAACTGTCTTGAAGTTGGAGTATGTGAGAATAAAAAATCTTCGATTAACCAAAAAACAGAGAAGGAGAATAAAAAATCTTGGCAGTTCTATGCCTGTAGATACAAGACTACTTTTGCCCAATTTGAAAACTATGTACTTGAAAAACGTGCAGTTTGATAAACATGCTCTCTTATATTTGATCCTCGAGTGTCCTTCCATTCAAGGTTTGTCATTAACTTCATGCCATTGTGAAAACTCGGATGACTTTCATGTTATAAGTTCGAGTCTCAAATCACTGGAAATTGAGCATTGCGATTCTCGGATTATTTTGGTTGATGAAGCTGTGAATCTTGAATCTTTTACGGTTTCATCAAACTCTTCGTTTCTGGATTATATTACCTTGTGTGACTGCCCCAACTTGAAATACATCAACGTCGATGCTGAGCACTTGAAGCACCTTACCGTAAGTGAAACCCATGATTGTTTGAAGGCCACAATCAATACTCCAAATCTAGTTACTTTCAGTTTCGAAGGGTTTTCGAAGTCCAAGATTCTTGTGAAAGCTCCAAATTTAAAGGTTACGCGAGTCTTTCTAGATGAAGAAGTACTAGGGTTTAACGGACCATTCAGATATTTTCCAACGCTCAGAGATTTTCTTGAGCATATTGGTTTTTCAAAGAGGGTCGTACTTTATATTAATGATTTTAAGGCTCTCCTCTTTCCTGAAGATTTTAGGAAGAACTTCTCTTCACCATTGTATGGTGTCAAGCACCTCGTTGTTGTGATGCCGAATTCTCAAAAGGAGGTGAGCGATATTCCTGAGTTCCGCCACGCATTGGGTTGGATGGCACCTTCAATAAATCAGTTGTCTCTTGGAGAAGAGAATCACCAACAATACCTTGCTAATATTTCCTTGGAAGGGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

467

Amino Acids

53.95

Weight (kDa)

7.59

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 198 - 316 6.8e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 749
AccB1I GGYRCC 1 cut(s) 1321
AccB7I CCANNNNNTGG 3 cut(s) 111, 1232, 1309
AccII CGCG 1 cut(s) 1057
AciI CCGC 1 cut(s) 1300
AclWI GGATC 3 cut(s) 158, 430, 667
AcsI RAATTY 5 cut(s) 54, 251, 293, 1042, 1264
AcuI CTGAAG 1 cut(s) 1218
AfaI GTAC 5 cut(s) 317, 321, 629, 1080, 1161
AfiI CCNNNNNNNGG 5 cut(s) 111, 142, 1232, 1309, 1392
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 5 cut(s) 80, 96, 385, 815, 1037
AluI AGCT 5 cut(s) 80, 96, 385, 815, 1037
Alw21I GWGCWC 1 cut(s) 921
Alw26I GTCTC 2 cut(s) 764, 1347
AlwI GGATC 3 cut(s) 158, 430, 667
Ama87I CYCGRG 1 cut(s) 677
AoxI GGCC 1 cut(s) 963
ApeKI GCWGC 2 cut(s) 80, 268
ApoI RAATTY 5 cut(s) 54, 251, 293, 1042, 1264
AseI ATTAAT 1 cut(s) 1170
Asp700I GAANNNNTTC 2 cut(s) 293, 1214
AspS9I GGNCC 1 cut(s) 1094
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 3 cut(s) 1215, 1291, 1352
AsuII TTCGAA 2 cut(s) 1002, 1013
AvaI CYCGRG 1 cut(s) 677
AvaII GGWCC 1 cut(s) 1094
BanI GGYRCC 1 cut(s) 1321
Bbv12I GWGCWC 1 cut(s) 921
BbvI GCAGC 2 cut(s) 67, 280
BccI CCATC 3 cut(s) 57, 110, 1312
BciT130I CCWGG 1 cut(s) 324
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 764, 1347
BfaI CTAG 4 cut(s) 386, 986, 1067, 1082
BfmI CTRYAG 1 cut(s) 588
BisI GCNGC 2 cut(s) 81, 269
BlpI GCTNAGC 1 cut(s) 915
BlsI GCNGC 2 cut(s) 82, 270
BmcAI AGTACT 1 cut(s) 1080
Bme1390I CCNGG 2 cut(s) 168, 324
Bme18I GGWCC 1 cut(s) 1094
BmeT110I CYCGRG 1 cut(s) 677
BmgT120I GGNCC 1 cut(s) 1094
BmiI GGNNCC 1 cut(s) 1323
BmrFI CCNGG 2 cut(s) 168, 324
BmrI ACTGGG 1 cut(s) 131
BmsI GCATC 2 cut(s) 901, 1248
BmuI ACTGGG 1 cut(s) 131
BpmI CTGGAG 1 cut(s) 345
Bpu1102I GCTNAGC 1 cut(s) 915
Bpu14I TTCGAA 2 cut(s) 1002, 1013
BpuEI CTTGAG 1 cut(s) 1151
BpuMI CCSGG 1 cut(s) 168
Bsa29I ATCGAT 1 cut(s) 192
BsaAI YACGTR 1 cut(s) 319
BsaJI CCNNGG 1 cut(s) 1386
BsaWI WCCGGW 1 cut(s) 438
Bsc4I CCNNNNNNNGG 5 cut(s) 111, 142, 1232, 1309, 1392
Bse1I ACTGG 2 cut(s) 137, 774
Bse3DI GCAATG 2 cut(s) 116, 781
BseBI CCWGG 1 cut(s) 324
BseCI ATCGAT 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 1386
BseGI GGATG 3 cut(s) 121, 739, 1323
BseLI CCNNNNNNNGG 5 cut(s) 111, 142, 1232, 1309, 1392
BseMI GCAATG 2 cut(s) 116, 781
BseMII CTCAG 4 cut(s) 367, 906, 1132, 1284
BseNI ACTGG 2 cut(s) 137, 774
BseRI GAGGAG 1 cut(s) 1178
BseXI GCAGC 2 cut(s) 67, 280
BsgI GTGCAG 1 cut(s) 662
Bsh1236I CGCG 1 cut(s) 1057
BshFI GGCC 1 cut(s) 965
BshNI GGYRCC 1 cut(s) 1321
BshVI ATCGAT 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 921
BsiHKCI CYCGRG 1 cut(s) 677
BsiSI CCGG 2 cut(s) 168, 439
BslI CCNNNNNNNGG 5 cut(s) 111, 142, 1232, 1309, 1392
BsmAI GTCTC 2 cut(s) 764, 1347
BsnI GGCC 1 cut(s) 965
BsoBI CYCGRG 1 cut(s) 677
Bsp119I TTCGAA 2 cut(s) 1002, 1013
Bsp1286I GDGCHC 1 cut(s) 921
Bsp143I GATC 4 cut(s) 163, 193, 435, 672
Bsp1720I GCTNAGC 1 cut(s) 915
BspACI CCGC 1 cut(s) 1300
BspANI GGCC 1 cut(s) 965
BspCNI CTCAG 4 cut(s) 366, 907, 1131, 1285
BspDI ATCGAT 1 cut(s) 192
BspFNI CGCG 1 cut(s) 1057
BspLI GGNNCC 1 cut(s) 1323
BspPI GGATC 3 cut(s) 158, 430, 667
BspT104I TTCGAA 2 cut(s) 1002, 1013
BspT107I GGYRCC 1 cut(s) 1321
BsrDI GCAATG 2 cut(s) 116, 781
BsrI ACTGG 2 cut(s) 137, 774
BssECI CCNNGG 1 cut(s) 1386
BssMI GATC 4 cut(s) 163, 193, 435, 672
BssT1I CCWWGG 1 cut(s) 1386
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 3 cut(s) 499, 838, 937
Bst6I CTCTTC 3 cut(s) 856, 1225, 1347
BstBAI YACGTR 1 cut(s) 319
BstBI TTCGAA 2 cut(s) 1002, 1013
BstDEI CTNAG 5 cut(s) 353, 398, 915, 1118, 1293
BstF5I GGATG 3 cut(s) 121, 739, 1323
BstFNI CGCG 1 cut(s) 1057
BstKTI GATC 4 cut(s) 166, 196, 438, 675
BstMAI GTCTC 2 cut(s) 764, 1347
BstMBI GATC 4 cut(s) 163, 193, 435, 672
BstMWI GCNNNNNNNGC 2 cut(s) 268, 925
BstNI CCWGG 1 cut(s) 324
BstNSI RCATGY 1 cut(s) 659
BstSCI CCNGG 2 cut(s) 166, 322
BstSFI CTRYAG 1 cut(s) 588
BstSNI TACGTA 1 cut(s) 319
BstUI CGCG 1 cut(s) 1057
BstV1I GCAGC 2 cut(s) 67, 280
BstX2I RGATCY 1 cut(s) 435
BstYI RGATCY 1 cut(s) 435
Bsu15I ATCGAT 1 cut(s) 192
BsuRI GGCC 1 cut(s) 965
BsuTUI ATCGAT 1 cut(s) 192
BtsCI GGATG 3 cut(s) 121, 739, 1323
BtsIMutI CAGTG 1 cut(s) 767
Cfr13I GGNCC 1 cut(s) 1094
ClaI ATCGAT 1 cut(s) 192
Csp6I GTAC 5 cut(s) 316, 320, 628, 1079, 1160
CviAII CATG 6 cut(s) 91, 307, 656, 714, 743, 950
CviJI RGCY 9 cut(s) 80, 96, 247, 385, 815, 965, 1037, 1184, 1396
CviKI_1 RGCY 9 cut(s) 80, 96, 247, 385, 815, 965, 1037, 1184, 1396
CviQI GTAC 5 cut(s) 316, 320, 628, 1079, 1160
DdeI CTNAG 5 cut(s) 353, 398, 915, 1118, 1293
DpnI GATC 4 cut(s) 165, 195, 437, 674
DpnII GATC 4 cut(s) 163, 193, 435, 672
DraI TTTAAA 1 cut(s) 1047
Eam1104I CTCTTC 3 cut(s) 856, 1225, 1347
EarI CTCTTC 3 cut(s) 856, 1225, 1347
EciI GGCGGA 1 cut(s) 1289
Eco105I TACGTA 1 cut(s) 319
Eco130I CCWWGG 1 cut(s) 1386
Eco32I GATATC 1 cut(s) 391
Eco47I GGWCC 1 cut(s) 1094
Eco57I CTGAAG 1 cut(s) 1218
Eco88I CYCGRG 1 cut(s) 677
EcoRI GAATTC 2 cut(s) 251, 1264
EcoRII CCWGG 1 cut(s) 322
EcoRV GATATC 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 1386
ErhI CCWWGG 1 cut(s) 1386
FaeI CATG 6 cut(s) 94, 310, 659, 717, 746, 953
FatI CATG 6 cut(s) 90, 306, 655, 713, 742, 949
Fnu4HI GCNGC 2 cut(s) 81, 269
FokI GGATG 3 cut(s) 128, 746, 1330
Fsp4HI GCNGC 2 cut(s) 81, 269
FspBI CTAG 4 cut(s) 386, 986, 1067, 1082
GluI GCNGC 2 cut(s) 81, 269
GsuI CTGGAG 1 cut(s) 345
HaeIII GGCC 1 cut(s) 965
HapII CCGG 2 cut(s) 168, 439
Hin1II CATG 6 cut(s) 94, 310, 659, 717, 746, 953
HpaII CCGG 2 cut(s) 168, 439
HphI GGTGA 3 cut(s) 1215, 1291, 1352
Hpy188I TCNGA 6 cut(s) 299, 468, 733, 795, 1103, 1121
Hpy99I CGWCG 3 cut(s) 11, 155, 911
HpyAV CCTTC 7 cut(s) 77, 549, 696, 955, 998, 1335, 1385
HpyCH4III ACNGT 3 cut(s) 499, 838, 937
HpyCH4IV ACGT 4 cut(s) 318, 375, 639, 906
HpyCH4V TGCA 3 cut(s) 479, 485, 643
HpyF10VI GCNNNNNNNGC 2 cut(s) 268, 925
HpyF3I CTNAG 5 cut(s) 353, 398, 915, 1118, 1293
HpySE526I ACGT 4 cut(s) 318, 375, 639, 906
Hsp92II CATG 6 cut(s) 94, 310, 659, 717, 746, 953
Kzo9I GATC 4 cut(s) 163, 193, 435, 672
LmnI GCTCC 2 cut(s) 382, 1042
Lsp1109I GCAGC 2 cut(s) 67, 280
LweI GCATC 2 cut(s) 901, 1248
MaeI CTAG 4 cut(s) 386, 986, 1067, 1082
MaeII ACGT 4 cut(s) 318, 375, 639, 906
MaeIII GTNAC 4 cut(s) 43, 878, 988, 1051
MalI GATC 4 cut(s) 165, 195, 437, 674
MboI GATC 4 cut(s) 163, 193, 435, 672
MboII GAAGA 7 cut(s) 524, 843, 1085, 1211, 1212, 1222, 1364
MflI RGATCY 1 cut(s) 435
MhlI GDGCHC 1 cut(s) 921
MluCI AATT 7 cut(s) 54, 251, 293, 613, 774, 1042, 1264
MlyI GAGTC 3 cut(s) 329, 766, 1068
MmeI TCCRAC 3 cut(s) 489, 1136, 1295
MnlI CCTC 9 cut(s) 36, 148, 306, 362, 686, 1146, 1199, 1256, 1270
MroXI GAANNNNTTC 2 cut(s) 293, 1214
MseI TTAA 7 cut(s) 198, 539, 707, 1046, 1089, 1170, 1179
MspI CCGG 2 cut(s) 168, 439
MspR9I CCNGG 2 cut(s) 168, 324
MvaI CCWGG 1 cut(s) 324
MvnI CGCG 1 cut(s) 1057
MwoI GCNNNNNNNGC 2 cut(s) 268, 925
NciI CCSGG 1 cut(s) 168
NdeII GATC 4 cut(s) 163, 193, 435, 672
NlaIII CATG 6 cut(s) 94, 310, 659, 717, 746, 953
NlaIV GGNNCC 1 cut(s) 1323
NmuCI GTSAC 1 cut(s) 878
NspI RCATGY 1 cut(s) 659
NspV TTCGAA 2 cut(s) 1002, 1013
PaeR7I CTCGAG 1 cut(s) 677
PcsI WCGNNNNNNNCGW 2 cut(s) 189, 372
PdmI GAANNNNTTC 2 cut(s) 293, 1214
PfeI GAWTC 8 cut(s) 205, 402, 447, 788, 820, 827, 1024, 1357
PflMI CCANNNNNTGG 3 cut(s) 111, 1232, 1309
PkrI GCNGC 2 cut(s) 82, 270
PleI GAGTC 3 cut(s) 329, 765, 1067
PpsI GAGTC 3 cut(s) 329, 765, 1067
Ppu21I YACGTR 1 cut(s) 319
PshBI ATTAAT 1 cut(s) 1170
PsiI TTATAA 1 cut(s) 749
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 1323
PspPI GGNCC 1 cut(s) 1094
PspXI VCTCGAGB 1 cut(s) 677
PsuI RGATCY 1 cut(s) 435
RsaI GTAC 5 cut(s) 317, 321, 629, 1080, 1161
RsaNI GTAC 5 cut(s) 316, 320, 628, 1079, 1160
SaqAI TTAA 7 cut(s) 198, 539, 707, 1046, 1089, 1170, 1179
SatI GCNGC 2 cut(s) 81, 269
Sau3AI GATC 4 cut(s) 163, 193, 435, 672
Sau96I GGNCC 1 cut(s) 1094
ScaI AGTACT 1 cut(s) 1080
SchI GAGTC 3 cut(s) 329, 766, 1068
ScrFI CCNGG 2 cut(s) 168, 324
SduI GDGCHC 1 cut(s) 921
SfaNI GCATC 2 cut(s) 901, 1248
SfcI CTRYAG 1 cut(s) 588
Sfr274I CTCGAG 1 cut(s) 677
SfuI TTCGAA 2 cut(s) 1002, 1013
SinI GGWCC 1 cut(s) 1094
SlaI CTCGAG 1 cut(s) 677
SmlI CTYRAG 2 cut(s) 677, 1130
SmoI CTYRAG 2 cut(s) 677, 1130
SnaBI TACGTA 1 cut(s) 319
Sse9I AATT 7 cut(s) 54, 251, 293, 613, 774, 1042, 1264
SsiI CCGC 1 cut(s) 1300
SspI AATATT 1 cut(s) 1381
SspMI CTAG 4 cut(s) 386, 986, 1067, 1082
StyD4I CCNGG 2 cut(s) 166, 322
StyI CCWWGG 1 cut(s) 1386
TaaI ACNGT 3 cut(s) 499, 838, 937
TaiI ACGT 4 cut(s) 321, 378, 642, 909
TasI AATT 7 cut(s) 54, 251, 293, 613, 774, 1042, 1264
TatI WGTACW 2 cut(s) 627, 1078
TfiI GAWTC 8 cut(s) 205, 402, 447, 788, 820, 827, 1024, 1357
Tru1I TTAA 7 cut(s) 198, 539, 707, 1046, 1089, 1170, 1179
Tru9I TTAA 7 cut(s) 198, 539, 707, 1046, 1089, 1170, 1179
TscAI CASTG 1 cut(s) 774
TseFI GTSAC 1 cut(s) 878
TseI GCWGC 2 cut(s) 80, 268
Tsp45I GTSAC 1 cut(s) 878
TspDTI ATGAA 6 cut(s) 214, 702, 731, 825, 831, 1086
TspGWI ACGGA 1 cut(s) 1107
TspRI CASTG 1 cut(s) 774
Van91I CCANNNNNTGG 3 cut(s) 111, 1232, 1309
VpaK11BI GGWCC 1 cut(s) 1094
VspI ATTAAT 1 cut(s) 1170
XapI RAATTY 5 cut(s) 54, 251, 293, 1042, 1264
XbaI TCTAGA 1 cut(s) 1066
XceI RCATGY 1 cut(s) 659
XhoI CTCGAG 1 cut(s) 677
XmnI GAANNNNTTC 2 cut(s) 293, 1214
XspI CTAG 4 cut(s) 386, 986, 1067, 1082
ZrmI AGTACT 1 cut(s) 1080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.