RchiOBHm_Chr6g0257131

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000428
Physical Location & Seq
Reverse (-)
12400647 .. 12402125
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23064

Sequence Viewer

Length: 1479 bp
ATGACTACCGCCAAAAACCCTATACTACCTCAGTTACCTGATGATATTATTCACCAAATCCTCCGACTCCTCCCCACCAAATCAGCTGTTCGTATGCGCTGTGTTTCCAAGCAGTTCGAAGATCTGTGGTCAATAAATCTGGACGAGGGCGATCCACTTGACAAGGATGACGACAATCCTCATCAGCACACAGAATTCATCAACTTCTCGGAGACCTCTTTGGATTCCCGCAAAAACGACAAGCACGTAGATAAATTCAGGCTGCGCATGTTGAGGTACTCACCCAAAGACTCTGCTATTATATCTAGATATCTGCGTTTTGCTTTCAAGAGAAACGTCATGGTGTTAGATCTCAGCCTTAGATCTAAACCTGGGTTAGCATACTACAACATGTCCTCGGCCTTTCTCGAACGAAATTATATAACTACCTTGAATTTGGAATGTGTGAGAATGAACTTAGGAAATCATGGTATAAAACTTCCATTGTTGAGAACTATGTCCTTCAAAAGTGTGGAAGTGGACTCGCAAGATTCTCTCACACGTTTGGTTTCATCGTGCCCTAACATGGAGAATTTGTCATTGAATTTCAAGTACGCTACTCATGAAAAGTTTTGCTTATCGTTAGAGACTCTTCTGGGTTTGAAGTATATAACTACTTTACATTTGGAGAATATGAAAATAAAGAGTGATACTGATGATAGGAGGGTACTTTATACCAATGATGGTAGGGAACGCCATCTGCCTTTAAAAACTATGAGCCTCAAAACTGTCCACTTGAAACTTTGCACTTTCCATGACTTAATTTCCAGATGCCCCTCTGTTGAGTATTTGTCACTCAGTTCATGCTCTTTTCCTCGGCGGTCTTCGATTCAATTTTCATGTTCTAGTCTCAAAACCTTGGAAGTTACCGATTGCAATGCTCAGCAGTTTAATGTTGAAGCTACGAATCTGGAATCTTTCACCTTGGTTTCAGAAATCCCGCTACTTGGTTCAGAAATTGGGCAACTTACTCGAACTGCTTTGCATGATTGCAAAAACTTGAAACATGTGAACATTCGCTCTGAGCACCTGCATGACATTGTATTAGGCGGCTGCAGAGATTGTGTCGAAGCCACAATTGATACCCCAAATCTAAGGTATTTCAACTTTATTGGCAATTTGAAGACCACGATTTCTATGGAAGCTCCAAATTTATTGGAAGCAAAAATTACACTTCTGTGCGGGAGACAATTCCCTACTTTGGTAGACTTTCTTAAAATATTTGGTCACAGCAAAAAAATACTCCTACATGTTGATGATGCTGAGGTGGATTTCGTCTTTCCAGAAAGCTTCAGAAAAAGTGTCTCTTGTCCACCGTTGCCTAGTCTCAAGCATCTTGTAGTCTACCGTAAAGAAAAGCTCAAGGAAAGAGATTCAGATTTGCAGAATTCCATGCTTTGGATGGCACCTTGTGCAGAACTTAAAATAAAAAATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

492

Amino Acids

56.51

Weight (kDa)

8.6

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 9 - 44 4.8e-09 F-box domain
LRR_At5g56370 PF24758 104 - 213 6.8e-06 FBD-associated F-box protein At5g56370, LRR repeats
LRR_At5g56370 PF24758 246 - 362 1.7e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1077
Acc16I TGCGCA 1 cut(s) 266
Acc36I ACCTGC 1 cut(s) 1077
AccB1I GGYRCC 1 cut(s) 1444
AccB7I CCANNNNNTGG 1 cut(s) 1437
AccI GTMKAC 2 cut(s) 1245, 1383
AciI CCGC 6 cut(s) 9, 229, 859, 980, 1089, 1221
AclWI GGATC 1 cut(s) 146
AcsI RAATTY 7 cut(s) 194, 254, 433, 571, 583, 1189, 1426
AcuI CTGAAG 1 cut(s) 1315
AdeI CACNNNGTG 1 cut(s) 1451
AfaI GTAC 3 cut(s) 278, 593, 708
AfiI CCNNNNNNNGG 4 cut(s) 565, 986, 1240, 1437
AflIII ACRYGT 4 cut(s) 390, 539, 1045, 1288
AjnI CCWGG 1 cut(s) 370
AleI CACNNNNGTG 1 cut(s) 1216
AluBI AGCT 5 cut(s) 86, 941, 1184, 1329, 1399
AluI AGCT 5 cut(s) 86, 941, 1184, 1329, 1399
Alw21I GWGCWC 1 cut(s) 1068
Alw26I GTCTC 6 cut(s) 206, 620, 893, 1219, 1348, 1370
AlwI GGATC 1 cut(s) 146
AoxI GGCC 1 cut(s) 399
ApeKI GCWGC 2 cut(s) 262, 1092
ApoI RAATTY 7 cut(s) 194, 254, 433, 571, 583, 1189, 1426
AspLEI GCGC 2 cut(s) 99, 267
AsuHPI GGTGA 3 cut(s) 44, 273, 952
AsuII TTCGAA 1 cut(s) 117
BaeGI GKGCMC 1 cut(s) 560
BanI GGYRCC 1 cut(s) 1444
BbsI GAAGAC 2 cut(s) 855, 1169
Bbv12I GWGCWC 1 cut(s) 1068
BbvCI CCTCAGC 1 cut(s) 1302
BbvI GCAGC 2 cut(s) 249, 1079
BccI CCATC 3 cut(s) 716, 744, 1435
BcgI CGANNNNNNTGC 4 cut(s) 899, 933, 992, 1026
BciT130I CCWGG 1 cut(s) 372
BcoDI GTCTC 6 cut(s) 206, 620, 893, 1219, 1348, 1370
BfaI CTAG 3 cut(s) 306, 885, 1362
BfmI CTRYAG 1 cut(s) 1093
BfuAI ACCTGC 1 cut(s) 1077
BglII AGATCT 3 cut(s) 121, 349, 362
BisI GCNGC 3 cut(s) 263, 1090, 1093
BlpI GCTNAGC 1 cut(s) 921
BlsI GCNGC 3 cut(s) 264, 1091, 1094
Bme1390I CCNGG 1 cut(s) 372
BmiI GGNNCC 1 cut(s) 1446
BmrFI CCNGG 1 cut(s) 372
BmsI GCATC 3 cut(s) 800, 1288, 1381
BpiI GAAGAC 2 cut(s) 855, 1169
Bpu10I CCTNAGC 1 cut(s) 1302
Bpu1102I GCTNAGC 1 cut(s) 921
Bpu14I TTCGAA 1 cut(s) 117
BpuEI CTTGAG 2 cut(s) 1352, 1385
BsaAI YACGTR 1 cut(s) 247
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 5 cut(s) 371, 396, 854, 897, 963
BsaXI ACNNNNNCTCC 2 cut(s) 560, 590
Bsc4I CCNNNNNNNGG 4 cut(s) 565, 986, 1240, 1437
Bse3DI GCAATG 1 cut(s) 922
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 5 cut(s) 371, 396, 854, 897, 963
BseGI GGATG 2 cut(s) 172, 1446
BseLI CCNNNNNNNGG 4 cut(s) 565, 986, 1240, 1437
BseMI GCAATG 1 cut(s) 922
BseMII CTCAG 6 cut(s) 44, 367, 850, 935, 1053, 1293
BseRI GAGGAG 1 cut(s) 59
BseSI GKGCMC 1 cut(s) 560
BseXI GCAGC 2 cut(s) 249, 1079
BsgI GTGCAG 1 cut(s) 1473
BshFI GGCC 1 cut(s) 401
BshNI GGYRCC 1 cut(s) 1444
BsiHKAI GWGCWC 1 cut(s) 1068
BslI CCNNNNNNNGG 4 cut(s) 565, 986, 1240, 1437
BsmAI GTCTC 6 cut(s) 206, 620, 893, 1219, 1348, 1370
BsnI GGCC 1 cut(s) 401
Bso31I GGTCTC 1 cut(s) 206
Bsp119I TTCGAA 1 cut(s) 117
Bsp1286I GDGCHC 2 cut(s) 560, 1068
Bsp143I GATC 4 cut(s) 121, 151, 349, 362
Bsp1720I GCTNAGC 1 cut(s) 921
BspACI CCGC 6 cut(s) 9, 229, 859, 980, 1089, 1221
BspANI GGCC 1 cut(s) 401
BspCNI CTCAG 6 cut(s) 43, 366, 849, 934, 1054, 1294
BspHI TCATGA 1 cut(s) 601
BspLI GGNNCC 1 cut(s) 1446
BspMAI CTGCAG 1 cut(s) 1097
BspMI ACCTGC 1 cut(s) 1077
BspPI GGATC 1 cut(s) 146
BspT104I TTCGAA 1 cut(s) 117
BspT107I GGYRCC 1 cut(s) 1444
BspTNI GGTCTC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 922
BssECI CCNNGG 5 cut(s) 371, 396, 854, 897, 963
BssMI GATC 4 cut(s) 121, 151, 349, 362
BssT1I CCWWGG 2 cut(s) 897, 963
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 3 cut(s) 769, 1356, 1388
Bst6I CTCTTC 1 cut(s) 636
BstAPI GCANNNNNTGC 1 cut(s) 1451
BstBAI YACGTR 1 cut(s) 247
BstBI TTCGAA 1 cut(s) 117
BstDEI CTNAG 9 cut(s) 30, 353, 359, 457, 836, 921, 1062, 1133, 1302
BstF5I GGATG 2 cut(s) 172, 1446
BstHHI GCGC 2 cut(s) 99, 267
BstKTI GATC 4 cut(s) 124, 154, 352, 365
BstMAI GTCTC 6 cut(s) 206, 620, 893, 1219, 1348, 1370
BstMBI GATC 4 cut(s) 121, 151, 349, 362
BstMWI GCNNNNNNNGC 1 cut(s) 1451
BstNI CCWGG 1 cut(s) 372
BstNSI RCATGY 4 cut(s) 271, 394, 1049, 1292
BstSCI CCNGG 1 cut(s) 370
BstSFI CTRYAG 1 cut(s) 1093
BstSLI GKGCMC 1 cut(s) 560
BstV1I GCAGC 2 cut(s) 249, 1079
BstV2I GAAGAC 2 cut(s) 855, 1169
BstX2I RGATCY 3 cut(s) 121, 349, 362
BstYI RGATCY 3 cut(s) 121, 349, 362
BsuRI GGCC 1 cut(s) 401
BtsCI GGATG 2 cut(s) 172, 1446
BveI ACCTGC 1 cut(s) 1077
CciI TCATGA 1 cut(s) 601
CfoI GCGC 2 cut(s) 99, 267
Csp6I GTAC 3 cut(s) 277, 592, 707
CviQI GTAC 3 cut(s) 277, 592, 707
DdeI CTNAG 9 cut(s) 30, 353, 359, 457, 836, 921, 1062, 1133, 1302
DpnI GATC 4 cut(s) 123, 153, 351, 364
DpnII GATC 4 cut(s) 121, 151, 349, 362
DraI TTTAAA 1 cut(s) 747
DraIII CACNNNGTG 1 cut(s) 1451
Eam1104I CTCTTC 1 cut(s) 636
EarI CTCTTC 1 cut(s) 636
Eco130I CCWWGG 2 cut(s) 897, 963
Eco31I GGTCTC 1 cut(s) 206
Eco32I GATATC 1 cut(s) 311
Eco57I CTGAAG 1 cut(s) 1315
EcoRI GAATTC 2 cut(s) 194, 1426
EcoRII CCWGG 1 cut(s) 370
EcoRV GATATC 1 cut(s) 311
EcoT14I CCWWGG 2 cut(s) 897, 963
ErhI CCWWGG 2 cut(s) 897, 963
FalI AAGNNNNNCTT 4 cut(s) 599, 631, 1330, 1362
FauI CCCGC 3 cut(s) 236, 987, 1214
FblI GTMKAC 2 cut(s) 1245, 1383
Fnu4HI GCNGC 3 cut(s) 263, 1090, 1093
FokI GGATG 2 cut(s) 179, 1453
Fsp4HI GCNGC 3 cut(s) 263, 1090, 1093
FspBI CTAG 3 cut(s) 306, 885, 1362
FspI TGCGCA 1 cut(s) 266
GlaI GCGC 2 cut(s) 98, 266
GluI GCNGC 3 cut(s) 263, 1090, 1093
HaeIII GGCC 1 cut(s) 401
HhaI GCGC 2 cut(s) 99, 267
Hin6I GCGC 2 cut(s) 97, 265
HinP1I GCGC 2 cut(s) 97, 265
HindIII AAGCTT 1 cut(s) 1327
HphI GGTGA 3 cut(s) 44, 273, 952
Hpy166II GTNNAC 6 cut(s) 520, 772, 1051, 1246, 1352, 1384
Hpy188I TCNGA 7 cut(s) 65, 211, 973, 994, 1063, 1334, 1417
Hpy188III TCNNGA 8 cut(s) 140, 306, 328, 407, 602, 807, 950, 1322
Hpy8I GTNNAC 6 cut(s) 520, 772, 1051, 1246, 1352, 1384
HpyAV CCTTC 1 cut(s) 511
HpyCH4III ACNGT 3 cut(s) 769, 1356, 1388
HpyCH4IV ACGT 3 cut(s) 246, 336, 541
HpyCH4V TGCA 8 cut(s) 786, 915, 1024, 1032, 1072, 1095, 1423, 1454
HpyF10VI GCNNNNNNNGC 1 cut(s) 1451
HpyF3I CTNAG 9 cut(s) 30, 353, 359, 457, 836, 921, 1062, 1133, 1302
HpySE526I ACGT 3 cut(s) 246, 336, 541
HspAI GCGC 2 cut(s) 97, 265
Kzo9I GATC 4 cut(s) 121, 151, 349, 362
LmnI GCTCC 1 cut(s) 1189
Lsp1109I GCAGC 2 cut(s) 249, 1079
LweI GCATC 3 cut(s) 800, 1288, 1381
MaeI CTAG 3 cut(s) 306, 885, 1362
MaeII ACGT 3 cut(s) 246, 336, 541
MaeIII GTNAC 4 cut(s) 33, 831, 904, 1265
MalI GATC 4 cut(s) 123, 153, 351, 364
MboI GATC 4 cut(s) 121, 151, 349, 362
MboII GAAGA 4 cut(s) 131, 623, 855, 1174
MfeI CAATTG 1 cut(s) 1116
MflI RGATCY 3 cut(s) 121, 349, 362
MhlI GDGCHC 2 cut(s) 560, 1068
MlyI GAGTC 4 cut(s) 60, 284, 515, 622
MmeI TCCRAC 1 cut(s) 88
MseI TTAA 5 cut(s) 746, 800, 930, 1254, 1461
MslI CAYNNNNRTG 3 cut(s) 1071, 1216, 1293
MspA1I CMGCKG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 372
MunI CAATTG 1 cut(s) 1116
MvaI CCWGG 1 cut(s) 372
MwoI GCNNNNNNNGC 1 cut(s) 1451
NdeII GATC 4 cut(s) 121, 151, 349, 362
NlaIV GGNNCC 1 cut(s) 1446
NmeAIII GCCGAG 2 cut(s) 377, 835
NmuCI GTSAC 2 cut(s) 831, 1265
NsbI TGCGCA 1 cut(s) 266
NspI RCATGY 4 cut(s) 271, 394, 1049, 1292
NspV TTCGAA 1 cut(s) 117
OliI CACNNNNGTG 1 cut(s) 1216
PagI TCATGA 1 cut(s) 601
PaqCI CACCTGC 1 cut(s) 1077
PciI ACATGT 3 cut(s) 390, 1045, 1288
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PfeI GAWTC 6 cut(s) 224, 530, 868, 946, 953, 1412
PflMI CCANNNNNTGG 1 cut(s) 1437
PkrI GCNGC 3 cut(s) 264, 1091, 1094
PleI GAGTC 4 cut(s) 60, 284, 515, 622
PpsI GAGTC 4 cut(s) 60, 284, 515, 622
Ppu21I YACGTR 1 cut(s) 247
PscI ACATGT 3 cut(s) 390, 1045, 1288
Psp6I CCWGG 1 cut(s) 370
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 1 cut(s) 1446
PstI CTGCAG 1 cut(s) 1097
PsuI RGATCY 3 cut(s) 121, 349, 362
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 3 cut(s) 278, 593, 708
RsaNI GTAC 3 cut(s) 277, 592, 707
RseI CAYNNNNRTG 3 cut(s) 1071, 1216, 1293
SaqAI TTAA 5 cut(s) 746, 800, 930, 1254, 1461
SatI GCNGC 3 cut(s) 263, 1090, 1093
Sau3AI GATC 4 cut(s) 121, 151, 349, 362
SchI GAGTC 4 cut(s) 60, 284, 515, 622
ScrFI CCNGG 1 cut(s) 372
SduI GDGCHC 2 cut(s) 560, 1068
SfaNI GCATC 3 cut(s) 800, 1288, 1381
SfcI CTRYAG 1 cut(s) 1093
SfuI TTCGAA 1 cut(s) 117
SmiMI CAYNNNNRTG 3 cut(s) 1071, 1216, 1293
SmlI CTYRAG 2 cut(s) 1367, 1400
SmoI CTYRAG 2 cut(s) 1367, 1400
SsiI CCGC 6 cut(s) 9, 229, 859, 980, 1089, 1221
SspI AATATT 1 cut(s) 1260
SspMI CTAG 3 cut(s) 306, 885, 1362
StyD4I CCNGG 1 cut(s) 370
StyI CCWWGG 2 cut(s) 897, 963
TaaI ACNGT 3 cut(s) 769, 1356, 1388
TaiI ACGT 3 cut(s) 249, 339, 544
TaqI TCGA 5 cut(s) 117, 408, 866, 1012, 1107
TauI GCSGC 1 cut(s) 1092
TfiI GAWTC 6 cut(s) 224, 530, 868, 946, 953, 1412
Tru1I TTAA 5 cut(s) 746, 800, 930, 1254, 1461
Tru9I TTAA 5 cut(s) 746, 800, 930, 1254, 1461
TseFI GTSAC 2 cut(s) 831, 1265
TseI GCWGC 2 cut(s) 262, 1092
Tsp45I GTSAC 2 cut(s) 831, 1265
TspDTI ATGAA 7 cut(s) 187, 467, 540, 618, 689, 831, 867
Van91I CCANNNNNTGG 1 cut(s) 1437
XapI RAATTY 7 cut(s) 194, 254, 433, 571, 583, 1189, 1426
XbaI TCTAGA 1 cut(s) 305
XceI RCATGY 4 cut(s) 271, 394, 1049, 1292
XcmI CCANNNNNNNNNTGG 2 cut(s) 1174, 1438
XmiI GTMKAC 2 cut(s) 1245, 1383
XspI CTAG 3 cut(s) 306, 885, 1362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.