Rmu_sc0000217.1_g000012

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000217.1
OG0000428
Physical Location & Seq
Forward (+)
47402 .. 48900
1499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000217.1_g000012.1.cds

Sequence Viewer

Length: 1170 bp
atgactgatagcacattactaccttacttacctgaccttgttatgcaccaaatcatcttatggtctgcactccgcatattagattttgacgagggcaatcagccacatgatgatgatgacgacgacgacaaccacacacatgcaaagttcctcaacatcttggaaaggtatttggaattccgtcagaaggacaagcagcaacctcccttggataaatttaggctttgtatgacaagtaagcatcagaaggttgaaagctactattgcttaccccggacggccattattaatgcaaaatctgtgactactctaaatttggagcacttgaggataaaggacattcacaacgttcctgagcctatgctcccctctttgaaaactttgtcgcttaaaaccatgcaagtgagtggccctgctctcttctacttaattttggggtgtacttcagttgagcctttgtcatttacttcatgttcttttgaccccccggtgtttctcatttcaagttctagcctcaaatcattggaagttaagaactgcaatttgcagcatattcgagttgatgaagctataaatcttgaatcgtttattcttgtttctgaattttctaacctcgagggtgtgctcttggataaatctttcaagttgacttctatgaaaatccgtgatcaacacctgagttactttggtttatctgaatgccatgatagcttggaggccacaatcaatactccaaatctgattcattttctgttccagggttctataaagtccaaaatttctctgtcagctcccaatttacaaatcgctcacatcctacttaagaaagagttttccaccttcaaggggccatggcaacattttgatattttgagggactttcttgaagcatttagttgctccaaaaatataaccttctttatacgtgatttcaagaccgagccgctgtctgatgaaaattcagacaacggtggaacacagttgtctgagaaacatacagacaacgtgtatgtgttaaacatgttgtgtgataatcgacagatggcttggcagatgccaggcgcagctgcgcggcagttgcggcgctgccttcaaacaacagtgctagttttgaagctgttgtatgttgagcttctcaaacaacagacttttattttgtgtgttgtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

389

Amino Acids

44.62

Weight (kDa)

6.06

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 614
AccII CGCG 1 cut(s) 1072
AciI CCGC 4 cut(s) 73, 944, 1072, 1081
AclI AACGTT 1 cut(s) 348
AcoI YGGCCR 1 cut(s) 279
AcsI RAATTY 6 cut(s) 176, 215, 313, 602, 777, 958
AcuI CTGAAG 1 cut(s) 429
AfaI GTAC 1 cut(s) 442
AfiI CCNNNNNNNGG 2 cut(s) 187, 846
AflII CTTAAG 1 cut(s) 821
AflIII ACRYGT 2 cut(s) 1005, 1020
AjnI CCWGG 2 cut(s) 756, 1057
AluBI AGCT 7 cut(s) 258, 569, 711, 791, 1067, 1117, 1132
AluI AGCT 7 cut(s) 258, 569, 711, 791, 1067, 1117, 1132
Alw21I GWGCWC 2 cut(s) 324, 627
Ama87I CYCGRG 1 cut(s) 614
AoxI GGCC 4 cut(s) 279, 409, 717, 848
ApeKI GCWGC 5 cut(s) 196, 547, 1064, 1067, 1086
ApoI RAATTY 6 cut(s) 176, 215, 313, 602, 777, 958
ArsI GACNNNNNNTTYG 2 cut(s) 1138, 1170
AseI ATTAAT 1 cut(s) 288
AspLEI GCGC 3 cut(s) 1064, 1072, 1086
AspS9I GGNCC 2 cut(s) 410, 848
AsuC2I CCSGG 2 cut(s) 274, 488
AvaI CYCGRG 1 cut(s) 614
Bbv12I GWGCWC 2 cut(s) 324, 627
BbvI GCAGC 5 cut(s) 208, 559, 1054, 1073, 1076
BccI CCATC 1 cut(s) 1036
BceAI ACGGC 1 cut(s) 294
BcgI CGANNNNNNTGC 2 cut(s) 536, 570
BciT130I CCWGG 2 cut(s) 758, 1059
BclI TGATCA 1 cut(s) 667
BcnI CCSGG 2 cut(s) 274, 488
BfaI CTAG 2 cut(s) 510, 1106
BfoI RGCGCY 1 cut(s) 1087
BfrI CTTAAG 1 cut(s) 821
BisI GCNGC 8 cut(s) 197, 548, 944, 1065, 1068, 1073, 1082, 1087
BlsI GCNGC 8 cut(s) 198, 549, 945, 1066, 1069, 1074, 1083, 1088
Bme1390I CCNGG 4 cut(s) 274, 488, 758, 1059
BmeT110I CYCGRG 1 cut(s) 614
BmgT120I GGNCC 2 cut(s) 410, 848
BmiI GGNNCC 1 cut(s) 849
BmrFI CCNGG 4 cut(s) 274, 488, 758, 1059
BmsI GCATC 2 cut(s) 250, 1044
Bpu10I CCTNAGC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 346
BpuMI CCSGG 2 cut(s) 274, 488
BsaAI YACGTR 1 cut(s) 926
BsaJI CCNNGG 5 cut(s) 207, 272, 486, 757, 851
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 846
BseBI CCWGG 2 cut(s) 758, 1059
BseDI CCNNGG 5 cut(s) 207, 272, 486, 757, 851
BseGI GGATG 1 cut(s) 813
BseLI CCNNNNNNNGG 2 cut(s) 187, 846
BseMII CTCAG 3 cut(s) 345, 668, 978
BseXI GCAGC 5 cut(s) 208, 559, 1054, 1073, 1076
BsgI GTGCAG 1 cut(s) 51
Bsh1236I CGCG 1 cut(s) 1072
BshFI GGCC 4 cut(s) 281, 411, 719, 850
BsiHKAI GWGCWC 2 cut(s) 324, 627
BsiHKCI CYCGRG 1 cut(s) 614
BsiSI CCGG 2 cut(s) 274, 488
BslFI GGGAC 1 cut(s) 890
BslI CCNNNNNNNGG 2 cut(s) 187, 846
BsmFI GGGAC 1 cut(s) 890
BsmI GAATGC 1 cut(s) 704
BsnI GGCC 4 cut(s) 281, 411, 719, 850
BsoBI CYCGRG 1 cut(s) 614
Bsp1286I GDGCHC 2 cut(s) 324, 627
Bsp143I GATC 1 cut(s) 667
Bsp19I CCATGG 1 cut(s) 851
BspACI CCGC 4 cut(s) 73, 944, 1072, 1081
BspANI GGCC 4 cut(s) 281, 411, 719, 850
BspCNI CTCAG 3 cut(s) 346, 669, 979
BspFNI CGCG 1 cut(s) 1072
BspLI GGNNCC 1 cut(s) 849
BspTI CTTAAG 1 cut(s) 821
BssECI CCNNGG 5 cut(s) 207, 272, 486, 757, 851
BssMI GATC 1 cut(s) 667
BssT1I CCWWGG 2 cut(s) 207, 851
Bst2UI CCWGG 2 cut(s) 758, 1059
Bst4CI ACNGT 3 cut(s) 971, 981, 1102
Bst6I CTCTTC 1 cut(s) 425
BstAFI CTTAAG 1 cut(s) 821
BstBAI YACGTR 1 cut(s) 926
BstDEI CTNAG 3 cut(s) 354, 677, 987
BstDSI CCRYGG 1 cut(s) 851
BstF5I GGATG 1 cut(s) 813
BstFNI CGCG 1 cut(s) 1072
BstH2I RGCGCY 1 cut(s) 1087
BstHHI GCGC 3 cut(s) 1064, 1072, 1086
BstKTI GATC 1 cut(s) 670
BstMBI GATC 1 cut(s) 667
BstMWI GCNNNNNNNGC 4 cut(s) 264, 708, 1078, 1081
BstNI CCWGG 2 cut(s) 758, 1059
BstNSI RCATGY 2 cut(s) 143, 1024
BstSCI CCNGG 4 cut(s) 272, 486, 756, 1057
BstUI CGCG 1 cut(s) 1072
BstV1I GCAGC 5 cut(s) 208, 559, 1054, 1073, 1076
BsuRI GGCC 4 cut(s) 281, 411, 719, 850
BtgI CCRYGG 1 cut(s) 851
BtsCI GGATG 1 cut(s) 813
BtsIMutI CAGTG 1 cut(s) 1107
CfoI GCGC 3 cut(s) 1064, 1072, 1086
Cfr13I GGNCC 2 cut(s) 410, 848
Csp6I GTAC 1 cut(s) 441
CviAII CATG 7 cut(s) 107, 140, 397, 471, 704, 852, 1021
CviQI GTAC 1 cut(s) 441
DdeI CTNAG 3 cut(s) 354, 677, 987
DpnI GATC 1 cut(s) 669
DpnII GATC 1 cut(s) 667
EaeI YGGCCR 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 425
EarI CTCTTC 1 cut(s) 425
Eco130I CCWWGG 2 cut(s) 207, 851
Eco57I CTGAAG 1 cut(s) 429
Eco88I CYCGRG 1 cut(s) 614
EcoRI GAATTC 1 cut(s) 176
EcoRII CCWGG 2 cut(s) 756, 1057
EcoT14I CCWWGG 2 cut(s) 207, 851
ErhI CCWWGG 2 cut(s) 207, 851
FaeI CATG 7 cut(s) 110, 143, 400, 474, 707, 855, 1024
FaqI GGGAC 1 cut(s) 890
FatI CATG 7 cut(s) 106, 139, 396, 470, 703, 851, 1020
FbaI TGATCA 1 cut(s) 667
Fnu4HI GCNGC 8 cut(s) 197, 548, 944, 1065, 1068, 1073, 1082, 1087
FokI GGATG 1 cut(s) 800
Fsp4HI GCNGC 8 cut(s) 197, 548, 944, 1065, 1068, 1073, 1082, 1087
FspBI CTAG 2 cut(s) 510, 1106
GlaI GCGC 3 cut(s) 1063, 1071, 1085
GluI GCNGC 8 cut(s) 197, 548, 944, 1065, 1068, 1073, 1082, 1087
HaeII RGCGCY 1 cut(s) 1087
HaeIII GGCC 4 cut(s) 281, 411, 719, 850
HapII CCGG 2 cut(s) 274, 488
HhaI GCGC 3 cut(s) 1064, 1072, 1086
Hin1II CATG 7 cut(s) 110, 143, 400, 474, 707, 855, 1024
Hin6I GCGC 3 cut(s) 1062, 1070, 1084
HinP1I GCGC 3 cut(s) 1062, 1070, 1084
HincII GTYRAC 1 cut(s) 648
HindII GTYRAC 1 cut(s) 648
HinfI GANTC 2 cut(s) 581, 742
HpaII CCGG 2 cut(s) 274, 488
Hpy166II GTNNAC 2 cut(s) 441, 648
Hpy188I TCNGA 9 cut(s) 186, 246, 601, 697, 741, 952, 964, 988, 1169
Hpy188III TCNNGA 4 cut(s) 353, 578, 884, 934
Hpy8I GTNNAC 2 cut(s) 441, 648
Hpy99I CGWCG 2 cut(s) 125, 128
HpyAV CCTTC 5 cut(s) 181, 241, 850, 925, 1100
HpyCH4III ACNGT 3 cut(s) 971, 981, 1102
HpyCH4IV ACGT 3 cut(s) 348, 925, 1005
HpyCH4V TGCA 7 cut(s) 46, 68, 143, 293, 400, 540, 547
HpyF10VI GCNNNNNNNGC 4 cut(s) 264, 708, 1078, 1081
HpyF3I CTNAG 3 cut(s) 354, 677, 987
HpySE526I ACGT 3 cut(s) 348, 925, 1005
Hsp92II CATG 7 cut(s) 110, 143, 400, 474, 707, 855, 1024
HspAI GCGC 3 cut(s) 1062, 1070, 1084
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 1 cut(s) 667
LmnI GCTCC 4 cut(s) 319, 369, 796, 905
Lsp1109I GCAGC 5 cut(s) 208, 559, 1054, 1073, 1076
LweI GCATC 2 cut(s) 250, 1044
MaeI CTAG 2 cut(s) 510, 1106
MaeII ACGT 3 cut(s) 348, 925, 1005
MaeIII GTNAC 2 cut(s) 301, 680
MalI GATC 1 cut(s) 669
MboI GATC 1 cut(s) 667
MboII GAAGA 1 cut(s) 412
MhlI GDGCHC 2 cut(s) 324, 627
MluCI AATT 9 cut(s) 176, 215, 313, 429, 541, 602, 777, 796, 958
MseI TTAA 6 cut(s) 288, 390, 428, 531, 822, 1016
MslI CAYNNNNRTG 3 cut(s) 111, 138, 401
MspA1I CMGCKG 2 cut(s) 946, 1067
MspCI CTTAAG 1 cut(s) 821
MspI CCGG 2 cut(s) 274, 488
MspR9I CCNGG 4 cut(s) 274, 488, 758, 1059
Mva1269I GAATGC 1 cut(s) 704
MvaI CCWGG 2 cut(s) 758, 1059
MvnI CGCG 1 cut(s) 1072
MwoI GCNNNNNNNGC 4 cut(s) 264, 708, 1078, 1081
NciI CCSGG 2 cut(s) 274, 488
NcoI CCATGG 1 cut(s) 851
NdeII GATC 1 cut(s) 667
NlaIII CATG 7 cut(s) 110, 143, 400, 474, 707, 855, 1024
NlaIV GGNNCC 1 cut(s) 849
NmuCI GTSAC 1 cut(s) 301
NspI RCATGY 2 cut(s) 143, 1024
PaeR7I CTCGAG 1 cut(s) 614
PciI ACATGT 1 cut(s) 1020
PctI GAATGC 1 cut(s) 704
PfeI GAWTC 2 cut(s) 581, 742
PkrI GCNGC 8 cut(s) 198, 549, 945, 1066, 1069, 1074, 1083, 1088
Ppu21I YACGTR 1 cut(s) 926
PscI ACATGT 1 cut(s) 1020
PshBI ATTAAT 1 cut(s) 288
Psp1406I AACGTT 1 cut(s) 348
Psp6I CCWGG 2 cut(s) 756, 1057
PspGI CCWGG 2 cut(s) 756, 1057
PspN4I GGNNCC 1 cut(s) 849
PspPI GGNCC 2 cut(s) 410, 848
PspXI VCTCGAGB 1 cut(s) 614
PvuII CAGCTG 1 cut(s) 1067
RsaI GTAC 1 cut(s) 442
RsaNI GTAC 1 cut(s) 441
RseI CAYNNNNRTG 3 cut(s) 111, 138, 401
SaqAI TTAA 6 cut(s) 288, 390, 428, 531, 822, 1016
SatI GCNGC 8 cut(s) 197, 548, 944, 1065, 1068, 1073, 1082, 1087
Sau3AI GATC 1 cut(s) 667
Sau96I GGNCC 2 cut(s) 410, 848
ScrFI CCNGG 4 cut(s) 274, 488, 758, 1059
SduI GDGCHC 2 cut(s) 324, 627
SfaNI GCATC 2 cut(s) 250, 1044
Sfr274I CTCGAG 1 cut(s) 614
SlaI CTCGAG 1 cut(s) 614
SmiMI CAYNNNNRTG 3 cut(s) 111, 138, 401
SmlI CTYRAG 3 cut(s) 325, 614, 821
SmoI CTYRAG 3 cut(s) 325, 614, 821
Sse9I AATT 9 cut(s) 176, 215, 313, 429, 541, 602, 777, 796, 958
SsiI CCGC 4 cut(s) 73, 944, 1072, 1081
SspMI CTAG 2 cut(s) 510, 1106
StyD4I CCNGG 4 cut(s) 272, 486, 756, 1057
StyI CCWWGG 2 cut(s) 207, 851
TaaI ACNGT 3 cut(s) 971, 981, 1102
TaiI ACGT 3 cut(s) 351, 928, 1008
TaqI TCGA 3 cut(s) 556, 615, 1036
TaqII GACCGA 1 cut(s) 953
TasI AATT 9 cut(s) 176, 215, 313, 429, 541, 602, 777, 796, 958
TatI WGTACW 1 cut(s) 440
TauI GCSGC 3 cut(s) 946, 1075, 1084
TfiI GAWTC 2 cut(s) 581, 742
Tru1I TTAA 6 cut(s) 288, 390, 428, 531, 822, 1016
Tru9I TTAA 6 cut(s) 288, 390, 428, 531, 822, 1016
TscAI CASTG 1 cut(s) 1107
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 5 cut(s) 196, 547, 1064, 1067, 1086
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 5 cut(s) 459, 579, 671, 734, 969
TspGWI ACGGA 2 cut(s) 170, 653
TspRI CASTG 1 cut(s) 1107
Vha464I CTTAAG 1 cut(s) 821
VspI ATTAAT 1 cut(s) 288
XapI RAATTY 6 cut(s) 176, 215, 313, 602, 777, 958
XceI RCATGY 2 cut(s) 143, 1024
XhoI CTCGAG 1 cut(s) 614
XspI CTAG 2 cut(s) 510, 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.