Rroxscaffold_2G00129540

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000428
Physical Location & Seq
Reverse (-)
65500671 .. 65501591
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00129540.1

Sequence Viewer

Length: 921 bp
ATGAAAAACTACTACTACTTTTCTCGGACGGCTCTTGCCAATGCAAAATCCTTGACTACTCTAAATCTAGGGTATGTTAGAATAAAGAACATTAGCTTTAAGGAGTGCTCTACATCCACATGTCTTCTTCCCTCTTTGAAATCTATGTCTCTCAAGAAGGTCCACTTTGACAAGGAAGCTCTCTTCTACTTGATCCGTGAGTGCTCTTGCATCGAATATTTGTCAATAATTTCATGTTCTTTCAAAGACGGTGAATTTCGGGTCTCGAGTTCTAGTCTCAAGTCTTTGCAAGTTGAGCATTGCGACTCTTTTGCAATTCAAGTTGATGACGCTGTGAATCTTGAATCTCTCACAATTGTTTCAGATATCGGTCCACCTCAACTTCCGAACTTCCATAGTATAATCTTGAAAGACTGCTTCAACTTGAAATGTTTGCACATATGTGCTCCGCAGGTGAAAGTATTTGATTTAGATGGATGCCATGATGTGAAAGGCACGATCGACGCTCCACTTCTAGATTCTATTACTTTCAAGGGTTACTTGAGTTCCAAACTTTCTCTCAAAGCTCCAAACTTGAGTATGACCCGCATCGTACTATTTGACAAATGGGACAGCGAAGCGGCCACTTTCAACAGCAGGCCATGGAACCATTTTACAACATTGAGCAATTTTCTTGAAGAATTTGGTAGCTCTAAAACTTTGGATCTTTATGTGAGTGATTTTAAGGCCCTTATGTTTCCAAAAAATTTCAGAAAGACCTTGTCTTCTCCAATATTCCCAAGTCTCAAAAAGCTTTATTTCTCGGTGAAGAATCCTCCAAGAAAGATGAACAAAGAGTTGAGCGATTCGTTGTATTGGATGGCACCTGATGTGCTGTTCATTAAAAATCTACCCTGGAGAATCAGGCACAGACCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

306

Amino Acids

34.99

Weight (kDa)

9.04

Isoelectric Point (pI)

41.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 11 - 157 7.3e-15 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 442
Acc36I ACCTGC 1 cut(s) 442
AccB1I GGYRCC 1 cut(s) 862
AciI CCGC 3 cut(s) 449, 586, 620
AclWI GGATC 2 cut(s) 187, 711
AcoI YGGCCR 1 cut(s) 621
AcsI RAATTY 3 cut(s) 254, 680, 745
AfaI GTAC 1 cut(s) 594
AflIII ACRYGT 1 cut(s) 119
AjnI CCWGG 1 cut(s) 893
AleI CACNNNNGTG 1 cut(s) 441
AluBI AGCT 5 cut(s) 96, 179, 566, 690, 793
AluI AGCT 5 cut(s) 96, 179, 566, 690, 793
Alw21I GWGCWC 3 cut(s) 110, 206, 448
Alw26I GTCTC 4 cut(s) 153, 268, 281, 788
AlwI GGATC 2 cut(s) 187, 711
Ama87I CYCGRG 1 cut(s) 265
AoxI GGCC 3 cut(s) 621, 638, 726
ApoI RAATTY 3 cut(s) 254, 680, 745
AspS9I GGNCC 3 cut(s) 160, 371, 727
AsuHPI GGTGA 3 cut(s) 263, 466, 817
AvaI CYCGRG 1 cut(s) 265
AvaII GGWCC 2 cut(s) 160, 371
BanI GGYRCC 1 cut(s) 862
BbsI GAAGAC 2 cut(s) 116, 756
Bbv12I GWGCWC 3 cut(s) 110, 206, 448
BccI CCATC 2 cut(s) 467, 853
BceAI ACGGC 1 cut(s) 45
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BciT130I CCWGG 1 cut(s) 895
BcoDI GTCTC 4 cut(s) 153, 268, 281, 788
BfaI CTAG 3 cut(s) 68, 273, 515
BfuAI ACCTGC 1 cut(s) 442
BisI GCNGC 1 cut(s) 621
BlsI GCNGC 1 cut(s) 622
Bme1390I CCNGG 1 cut(s) 895
Bme18I GGWCC 2 cut(s) 160, 371
BmeT110I CYCGRG 1 cut(s) 265
BmgT120I GGNCC 3 cut(s) 160, 371, 727
BmiI GGNNCC 2 cut(s) 647, 864
BmrFI CCNGG 1 cut(s) 895
BmsI GCATC 3 cut(s) 219, 467, 597
BpiI GAAGAC 2 cut(s) 116, 756
BpmI CTGGAG 1 cut(s) 916
BpuEI CTTGAG 4 cut(s) 137, 263, 562, 595
BsaI GGTCTC 1 cut(s) 268
BsaJI CCNNGG 2 cut(s) 641, 893
Bse3DI GCAATG 1 cut(s) 298
BseBI CCWGG 1 cut(s) 895
BseDI CCNNGG 2 cut(s) 641, 893
BseGI GGATG 3 cut(s) 113, 482, 864
BseMI GCAATG 1 cut(s) 298
Bsh1285I CGRYCG 1 cut(s) 501
BshFI GGCC 3 cut(s) 623, 640, 728
BshNI GGYRCC 1 cut(s) 862
BsiEI CGRYCG 1 cut(s) 501
BsiHKAI GWGCWC 3 cut(s) 110, 206, 448
BsiHKCI CYCGRG 1 cut(s) 265
BslFI GGGAC 1 cut(s) 623
BsmAI GTCTC 4 cut(s) 153, 268, 281, 788
BsmFI GGGAC 1 cut(s) 623
BsnI GGCC 3 cut(s) 623, 640, 728
Bso31I GGTCTC 1 cut(s) 268
BsoBI CYCGRG 1 cut(s) 265
Bsp1286I GDGCHC 3 cut(s) 110, 206, 448
Bsp143I GATC 3 cut(s) 192, 498, 703
Bsp19I CCATGG 1 cut(s) 641
BspACI CCGC 3 cut(s) 449, 586, 620
BspANI GGCC 3 cut(s) 623, 640, 728
BspLI GGNNCC 2 cut(s) 647, 864
BspMI ACCTGC 1 cut(s) 442
BspPI GGATC 2 cut(s) 187, 711
BspT107I GGYRCC 1 cut(s) 862
BspTNI GGTCTC 1 cut(s) 268
BsrDI GCAATG 1 cut(s) 298
BssECI CCNNGG 2 cut(s) 641, 893
BssMI GATC 3 cut(s) 192, 498, 703
BssT1I CCWWGG 1 cut(s) 641
Bst2UI CCWGG 1 cut(s) 895
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 638
BstDSI CCRYGG 1 cut(s) 641
BstF5I GGATG 3 cut(s) 113, 482, 864
BstKTI GATC 3 cut(s) 195, 501, 706
BstMAI GTCTC 4 cut(s) 153, 268, 281, 788
BstMBI GATC 3 cut(s) 192, 498, 703
BstMCI CGRYCG 1 cut(s) 501
BstMWI GCNNNNNNNGC 1 cut(s) 295
BstNI CCWGG 1 cut(s) 895
BstNSI RCATGY 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 893
BstV2I GAAGAC 2 cut(s) 116, 756
BstX2I RGATCY 1 cut(s) 703
BstYI RGATCY 1 cut(s) 703
BsuRI GGCC 3 cut(s) 623, 640, 728
BtgI CCRYGG 1 cut(s) 641
BtsCI GGATG 3 cut(s) 113, 482, 864
BveI ACCTGC 1 cut(s) 442
Cac8I GCNNGC 1 cut(s) 638
Cfr13I GGNCC 3 cut(s) 160, 371, 727
CseI GACGC 2 cut(s) 338, 512
Csp6I GTAC 1 cut(s) 593
CviAII CATG 4 cut(s) 120, 234, 482, 642
CviJI RGCY 9 cut(s) 32, 96, 179, 566, 623, 640, 690, 728, 793
CviKI_1 RGCY 9 cut(s) 32, 96, 179, 566, 623, 640, 690, 728, 793
CviQI GTAC 1 cut(s) 593
DpnI GATC 3 cut(s) 194, 500, 705
DpnII GATC 3 cut(s) 192, 498, 703
EaeI YGGCCR 1 cut(s) 621
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 641
Eco31I GGTCTC 1 cut(s) 268
Eco32I GATATC 1 cut(s) 367
Eco47I GGWCC 2 cut(s) 160, 371
Eco88I CYCGRG 1 cut(s) 265
EcoO109I RGGNCCY 1 cut(s) 727
EcoRII CCWGG 1 cut(s) 893
EcoRV GATATC 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 641
ErhI CCWWGG 1 cut(s) 641
FaeI CATG 4 cut(s) 123, 237, 485, 645
FalI AAGNNNNNCTT 4 cut(s) 149, 181, 524, 556
FaqI GGGAC 1 cut(s) 623
FatI CATG 4 cut(s) 119, 233, 481, 641
FauI CCCGC 1 cut(s) 593
FauNDI CATATG 1 cut(s) 440
Fnu4HI GCNGC 1 cut(s) 621
FokI GGATG 3 cut(s) 100, 489, 871
Fsp4HI GCNGC 1 cut(s) 621
FspBI CTAG 3 cut(s) 68, 273, 515
GluI GCNGC 1 cut(s) 621
GsuI CTGGAG 1 cut(s) 916
HaeIII GGCC 3 cut(s) 623, 640, 728
HgaI GACGC 2 cut(s) 338, 512
Hin1II CATG 4 cut(s) 123, 237, 485, 645
HindIII AAGCTT 1 cut(s) 791
HinfI GANTC 7 cut(s) 305, 337, 344, 518, 811, 845, 900
HphI GGTGA 3 cut(s) 263, 466, 817
Hpy166II GTNNAC 2 cut(s) 163, 374
Hpy188I TCNGA 4 cut(s) 27, 364, 387, 752
Hpy188III TCNNGA 6 cut(s) 154, 265, 341, 406, 515, 674
Hpy8I GTNNAC 2 cut(s) 163, 374
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 5 cut(s) 44, 210, 289, 314, 436
HpyF10VI GCNNNNNNNGC 1 cut(s) 295
Hsp92II CATG 4 cut(s) 123, 237, 485, 645
Kzo9I GATC 3 cut(s) 192, 498, 703
LmnI GCTCC 3 cut(s) 451, 511, 571
LpnPI CCDG 6 cut(s) 437, 622, 879, 880, 889, 907
LweI GCATC 3 cut(s) 219, 467, 597
MaeI CTAG 3 cut(s) 68, 273, 515
MaeIII GTNAC 1 cut(s) 536
MalI GATC 3 cut(s) 194, 500, 705
MboI GATC 3 cut(s) 192, 498, 703
MboII GAAGA 6 cut(s) 116, 119, 175, 689, 756, 820
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 1 cut(s) 703
MhlI GDGCHC 3 cut(s) 110, 206, 448
MluCI AATT 7 cut(s) 228, 254, 315, 354, 667, 680, 745
MlyI GAGTC 1 cut(s) 299
MnlI CCTC 3 cut(s) 142, 387, 825
MseI TTAA 3 cut(s) 99, 723, 882
MslI CAYNNNNRTG 2 cut(s) 118, 441
MspR9I CCNGG 1 cut(s) 895
MunI CAATTG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 895
MwoI GCNNNNNNNGC 1 cut(s) 295
NcoI CCATGG 1 cut(s) 641
NdeI CATATG 1 cut(s) 440
NdeII GATC 3 cut(s) 192, 498, 703
NlaIII CATG 4 cut(s) 123, 237, 485, 645
NlaIV GGNNCC 2 cut(s) 647, 864
NspI RCATGY 1 cut(s) 123
OliI CACNNNNGTG 1 cut(s) 441
PaeR7I CTCGAG 1 cut(s) 265
PaqCI CACCTGC 1 cut(s) 442
PciI ACATGT 1 cut(s) 119
PfeI GAWTC 6 cut(s) 337, 344, 518, 811, 845, 900
PflFI GACNNNGTC 1 cut(s) 760
PkrI GCNGC 1 cut(s) 622
Ple19I CGATCG 1 cut(s) 501
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
PscI ACATGT 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 893
PspGI CCWGG 1 cut(s) 893
PspN4I GGNNCC 2 cut(s) 647, 864
PspPI GGNCC 3 cut(s) 160, 371, 727
PsuI RGATCY 1 cut(s) 703
PsyI GACNNNGTC 1 cut(s) 760
PvuI CGATCG 1 cut(s) 501
RsaI GTAC 1 cut(s) 594
RsaNI GTAC 1 cut(s) 593
RseI CAYNNNNRTG 2 cut(s) 118, 441
SaqAI TTAA 3 cut(s) 99, 723, 882
SatI GCNGC 1 cut(s) 621
Sau3AI GATC 3 cut(s) 192, 498, 703
Sau96I GGNCC 3 cut(s) 160, 371, 727
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 895
SduI GDGCHC 3 cut(s) 110, 206, 448
SfaNI GCATC 3 cut(s) 219, 467, 597
Sfr274I CTCGAG 1 cut(s) 265
SinI GGWCC 2 cut(s) 160, 371
SlaI CTCGAG 1 cut(s) 265
SmiMI CAYNNNNRTG 2 cut(s) 118, 441
SmlI CTYRAG 5 cut(s) 152, 265, 278, 541, 574
SmoI CTYRAG 5 cut(s) 152, 265, 278, 541, 574
Sse9I AATT 7 cut(s) 228, 254, 315, 354, 667, 680, 745
SsiI CCGC 3 cut(s) 449, 586, 620
SspI AATATT 2 cut(s) 218, 774
SspMI CTAG 3 cut(s) 68, 273, 515
StyD4I CCNGG 1 cut(s) 893
StyI CCWWGG 1 cut(s) 641
TaaI ACNGT 1 cut(s) 251
TaqI TCGA 3 cut(s) 213, 266, 501
TaqII GACCGA 1 cut(s) 359
TasI AATT 7 cut(s) 228, 254, 315, 354, 667, 680, 745
TauI GCSGC 1 cut(s) 623
TfiI GAWTC 6 cut(s) 337, 344, 518, 811, 845, 900
Tru1I TTAA 3 cut(s) 99, 723, 882
Tru9I TTAA 3 cut(s) 99, 723, 882
TspDTI ATGAA 4 cut(s) 17, 222, 842, 868
TspGWI ACGGA 1 cut(s) 185
Tth111I GACNNNGTC 1 cut(s) 760
VpaK11BI GGWCC 2 cut(s) 160, 371
XapI RAATTY 3 cut(s) 254, 680, 745
XbaI TCTAGA 1 cut(s) 514
XceI RCATGY 1 cut(s) 123
XhoI CTCGAG 1 cut(s) 265
XspI CTAG 3 cut(s) 68, 273, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.