FvH4_6g51091

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000428
Physical Location & Seq
Forward (+)
37921303 .. 37922619
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51091.t1

Sequence Viewer

Length: 969 bp
ATGGCCGACGTCAACACCGAGGGTCGACCTGAATTACTAGACCTTGTCATCCATGAAATTCTACGCCGTCTGCCCACCAAAGCTGCCGTGGGCATGAGCCTTCTTTCCAAGCAGTGGGAGGGTATATTGTCTTCTGTTCCCACATTAGATTTCGACGTGGGAAAGAGAAACAAGAAACTCGAGCAACATCAAAAGTTCGTCAACATGTTACAGAGATGTTTGTTAGTATGCAACAACGAAAAAGAGAAACAAGTATTGGATAAATTCAGGCTTCGCATGACGAACTATTACTTATGCAGGGATGCCATCGCTGTGACCAAGTGGTTGAATTATTCATTTGAGAGAAGCGTTAAAGAAGTAGACATTAGCCTTAGAGTTCGTAAAGCGCAACAGGGGGATCGAGGCATCAAGATTAATGTTTCGAGTTCTAGTTTGAAATCCATAGAAATCAAGCATTGCAAGGCTACTCGAATTCATGTGCACAAAGCTGTGAATCTGGAATCTGTTACGGTTGTTTCACCAAAACCTCATCCTCTTGTGGGCACAATCATTGCTCCAAATCTATTTTATTTTAGCTTCCAAGGTTACTTAAAGTCCAAGCTTTCTTTAAGAGCTCCAAACTTAAGATCTGCTCGCATCGTATTACTGGACATTTGGGGTGAGGAATCATCCAGCAGCTTCGACCAGCAGCCATGGAAACATTTTCCTAAACTGACAGAGTTTGGTAAAGAATTCGGTAGTTCCAAGAAGATGGCCCTCTTTCTTCATGATTTTAGGGCTCTCATATTTCCCAAAGATTTCAGAAGGACCCTGTCATCATCAGTATTGCCTAGTGTTGAAATTCTTGAATTCTGGATGAATACCGTTGTTCCGGCAAATGAGAGAGATGCGGAAGACTTGATACAGTCCTTGCAATGGATGGCACCTTTAGCAACAGATATTGAGTTTGTGCATACGTCCTTGAAGTGA

Protein Analysis

323

Amino Acids

36.98

Weight (kDa)

9.51

Isoelectric Point (pI)

52.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000428)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09331 FvH4_1g09661 FvH4_1g21942 FvH4_2g05841 FvH4_2g06090 FvH4_3g02580 FvH4_3g02591 FvH4_6g51091 FvH4_7g18893 FvH4_7g20022 FvH4_7g20111
malus_domestica MD09G1117600.v1.1 MD17G1117300.v1.1 MD17G1286200.v1.1
prunus_persica Prupe.8G124500_v2.0.a1 Prupe.8G124700_v2.0.a1 Prupe.8G124700_v2.0.a1
pyrus_communis pycom17g10120
rosa_chinensis RchiOBHm_Chr1g0354511 RchiOBHm_Chr1g0360131 RchiOBHm_Chr1g0365181 RchiOBHm_Chr1g0365201 RchiOBHm_Chr2g0096151 RchiOBHm_Chr2g0113181 RchiOBHm_Chr6g0257131 RchiOBHm_Chr6g0257771 RchiOBHm_Chr6g0265441 RchiOBHm_Chr6g0265451 RchiOBHm_Chr6g0265471 RchiOBHm_Chr6g0265481
rosa_multiflora Rmu_co8204816.1_g000001 Rmu_co8281643.1_g000001 Rmu_sc0000146.1_g000019 Rmu_sc0000217.1_g000012 Rmu_sc0001530.1_g000020 Rmu_sc0003520.1_g000002 Rmu_sc0003983.1_g000008 Rmu_sc0004419.1_g000008 Rmu_sc0004448.1_g000035 Rmu_sc0004896.1_g000001 Rmu_sc0005996.1_g000016 Rmu_sc0006683.1_g000002 Rmu_sc0007813.1_g000006 Rmu_sc0008035.1_g000004 Rmu_sc0008490.1_g000002 Rmu_sc0008742.1_g000001 Rmu_sc0010908.1_g000002 Rmu_sc0010908.1_g000007 Rmu_sc0011315.1_g000015 Rmu_sc0013544.1_g000002 Rmu_sc0014962.1_g000001 Rmu_sc0015275.1_g000003 Rmu_sc0017847.1_g000006 Rmu_sc0024070.1_g000003 Rmu_sc0040696.1_g000001 Rmu_ssc0000066.1_g000007 Rmu_ssc0000368.1_g000042
rosa_roxburghii Rroxscaffold_175G00432410 Rroxscaffold_2G00129540 Rroxscaffold_2G00146070 Rroxscaffold_6G00430280 Rroxscaffold_7G00202650 Rroxscaffold_7G00208930
rosa_rugosa Rorug01G0302700 Rorug01G0302800 Rorug02G0116400 Rorug04G0099000 Rorug05G0568500 Rorug05G0575100
rosa_samantha Rh1CG237300 Rh1CG272100 Rh1CG307500 Rh2BG009200 Rh2DG103600 Rh2DG169700 Rh2DG169800 Rh2DG248200 Rh2DG609700 Rh3AG050300 Rh5AG024900 Rh5AG025400 Rh6AG092900 Rh6BG079600 Rh6BG083600 Rh6BG137900 Rh6BG138600 Rh6BG138900 Rh6BG139000 Rh6CG136100
rosa_wichuraiana Rw1G022220 Rw2G008030 Rw2G012930 Rw5G002340 Rw6G008000 Rw6G011990 Rw6G012000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 12
AccB1I GGYRCC 1 cut(s) 922
AccB7I CCANNNNNTGG 1 cut(s) 114
AccI GTMKAC 2 cut(s) 25, 360
AciI CCGC 1 cut(s) 890
AclWI GGATC 1 cut(s) 405
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 6 cut(s) 57, 263, 471, 731, 840, 848
AcyI GRCGYC 1 cut(s) 9
AfiI CCNNNNNNNGG 3 cut(s) 114, 539, 915
AflII CTTAAG 1 cut(s) 622
AflIII ACRYGT 1 cut(s) 204
AgsI TTSAA 5 cut(s) 328, 436, 839, 848, 964
AjiI CACGTC 1 cut(s) 157
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AluBI AGCT 6 cut(s) 83, 488, 576, 601, 614, 678
AluI AGCT 6 cut(s) 83, 488, 576, 601, 614, 678
Alw21I GWGCWC 2 cut(s) 483, 616
Alw44I GTGCAC 1 cut(s) 479
AlwI GGATC 1 cut(s) 405
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 2 cut(s) 3, 753
ApaLI GTGCAC 1 cut(s) 479
ApeKI GCWGC 3 cut(s) 83, 675, 688
ApoI RAATTY 6 cut(s) 57, 263, 471, 731, 840, 848
AseI ATTAAT 1 cut(s) 414
AspLEI GCGC 1 cut(s) 388
AspS9I GGNCC 2 cut(s) 754, 807
AsuHPI GGTGA 2 cut(s) 510, 671
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 1 cut(s) 807
BaeGI GKGCMC 2 cut(s) 483, 545
BanI GGYRCC 1 cut(s) 922
BanII GRGCYC 2 cut(s) 616, 781
BarI GAAGNNNNNNTAC 4 cut(s) 115, 147, 885, 917
BbsI GAAGAC 2 cut(s) 123, 900
Bbv12I GWGCWC 2 cut(s) 483, 616
BbvI GCAGC 3 cut(s) 70, 687, 700
BccI CCATC 3 cut(s) 314, 745, 913
BceAI ACGGC 2 cut(s) 51, 71
BfaI CTAG 3 cut(s) 38, 429, 831
BfrI CTTAAG 1 cut(s) 622
BglII AGATCT 1 cut(s) 626
BisI GCNGC 3 cut(s) 84, 676, 689
BlsI GCNGC 3 cut(s) 85, 677, 690
Bme18I GGWCC 1 cut(s) 807
BmeT110I CYCGRG 1 cut(s) 179
BmgBI CACGTC 1 cut(s) 157
BmgT120I GGNCC 2 cut(s) 754, 807
BmiI GGNNCC 2 cut(s) 809, 924
BmsI GCATC 4 cut(s) 292, 414, 645, 877
BpiI GAAGAC 2 cut(s) 123, 900
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 4 cut(s) 18, 87, 580, 692
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 539, 915
Bse1I ACTGG 1 cut(s) 651
Bse3DI GCAATG 3 cut(s) 454, 549, 920
BseDI CCNNGG 4 cut(s) 18, 87, 580, 692
BseGI GGATG 6 cut(s) 48, 307, 529, 668, 861, 924
BseLI CCNNNNNNNGG 3 cut(s) 114, 539, 915
BseMI GCAATG 3 cut(s) 454, 549, 920
BseNI ACTGG 1 cut(s) 651
BseSI GKGCMC 2 cut(s) 483, 545
BseXI GCAGC 3 cut(s) 70, 687, 700
BshFI GGCC 2 cut(s) 5, 755
BshNI GGYRCC 1 cut(s) 922
BsiHKAI GWGCWC 2 cut(s) 483, 616
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 1 cut(s) 872
BslI CCNNNNNNNGG 3 cut(s) 114, 539, 915
BsnI GGCC 2 cut(s) 5, 755
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 4 cut(s) 483, 545, 616, 781
Bsp143I GATC 2 cut(s) 397, 626
Bsp19I CCATGG 1 cut(s) 692
BspACI CCGC 1 cut(s) 890
BspANI GGCC 2 cut(s) 5, 755
BspHI TCATGA 1 cut(s) 766
BspLI GGNNCC 2 cut(s) 809, 924
BspPI GGATC 1 cut(s) 405
BspT107I GGYRCC 1 cut(s) 922
BspTI CTTAAG 1 cut(s) 622
BsrDI GCAATG 3 cut(s) 454, 549, 920
BsrI ACTGG 1 cut(s) 651
BssECI CCNNGG 4 cut(s) 18, 87, 580, 692
BssMI GATC 2 cut(s) 397, 626
BssNI GRCGYC 1 cut(s) 9
BssT1I CCWWGG 2 cut(s) 580, 692
Bst4CI ACNGT 3 cut(s) 511, 865, 906
BstACI GRCGYC 1 cut(s) 9
BstAFI CTTAAG 1 cut(s) 622
BstC8I GCNNGC 1 cut(s) 634
BstDEI CTNAG 1 cut(s) 371
BstDSI CCRYGG 2 cut(s) 87, 692
BstF5I GGATG 6 cut(s) 48, 307, 529, 668, 861, 924
BstHHI GCGC 1 cut(s) 388
BstKTI GATC 2 cut(s) 400, 629
BstMBI GATC 2 cut(s) 397, 626
BstMWI GCNNNNNNNGC 1 cut(s) 929
BstNSI RCATGY 1 cut(s) 208
BstSLI GKGCMC 2 cut(s) 483, 545
BstV1I GCAGC 3 cut(s) 70, 687, 700
BstV2I GAAGAC 2 cut(s) 123, 900
BstX2I RGATCY 1 cut(s) 626
BstXI CCANNNNNNTGG 1 cut(s) 751
BstYI RGATCY 1 cut(s) 626
BsuRI GGCC 2 cut(s) 5, 755
BtgI CCRYGG 2 cut(s) 87, 692
BtgZI GCGATG 1 cut(s) 292
BtrI CACGTC 1 cut(s) 157
BtsCI GGATG 6 cut(s) 48, 307, 529, 668, 861, 924
BtsI GCAGTG 1 cut(s) 119
BtsIMutI CAGTG 1 cut(s) 119
Cac8I GCNNGC 1 cut(s) 634
CciI TCATGA 1 cut(s) 766
CfoI GCGC 1 cut(s) 388
Cfr13I GGNCC 2 cut(s) 754, 807
CviAII CATG 7 cut(s) 53, 94, 205, 277, 476, 693, 767
DdeI CTNAG 1 cut(s) 371
DpnI GATC 2 cut(s) 399, 628
DpnII GATC 2 cut(s) 397, 626
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 614
Eco130I CCWWGG 2 cut(s) 580, 692
Eco24I GRGCYC 2 cut(s) 616, 781
Eco47I GGWCC 1 cut(s) 807
Eco53kI GAGCTC 1 cut(s) 614
Eco88I CYCGRG 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 614
EcoO109I RGGNCCY 1 cut(s) 807
EcoRI GAATTC 3 cut(s) 471, 731, 848
EcoT14I CCWWGG 2 cut(s) 580, 692
EcoT38I GRGCYC 2 cut(s) 616, 781
ErhI CCWWGG 2 cut(s) 580, 692
FaeI CATG 7 cut(s) 56, 97, 208, 280, 479, 696, 770
FatI CATG 7 cut(s) 52, 93, 204, 276, 475, 692, 766
FblI GTMKAC 2 cut(s) 25, 360
Fnu4HI GCNGC 3 cut(s) 84, 676, 689
FokI GGATG 6 cut(s) 35, 314, 516, 655, 868, 931
FriOI GRGCYC 2 cut(s) 616, 781
Fsp4HI GCNGC 3 cut(s) 84, 676, 689
FspBI CTAG 3 cut(s) 38, 429, 831
GlaI GCGC 1 cut(s) 387
GluI GCNGC 3 cut(s) 84, 676, 689
HaeIII GGCC 2 cut(s) 5, 755
HapII CCGG 1 cut(s) 872
HhaI GCGC 1 cut(s) 388
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 7 cut(s) 56, 97, 208, 280, 479, 696, 770
Hin6I GCGC 1 cut(s) 386
HinP1I GCGC 1 cut(s) 386
HincII GTYRAC 3 cut(s) 13, 26, 202
HindII GTYRAC 3 cut(s) 13, 26, 202
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 3 cut(s) 493, 500, 665
HpaII CCGG 1 cut(s) 872
HphI GGTGA 2 cut(s) 510, 671
Hpy166II GTNNAC 5 cut(s) 13, 26, 202, 361, 481
Hpy188I TCNGA 1 cut(s) 803
Hpy188III TCNNGA 5 cut(s) 409, 497, 767, 845, 853
Hpy8I GTNNAC 5 cut(s) 13, 26, 202, 361, 481
Hpy99I CGWCG 2 cut(s) 11, 158
HpyAV CCTTC 2 cut(s) 110, 798
HpyCH4III ACNGT 3 cut(s) 511, 865, 906
HpyCH4IV ACGT 3 cut(s) 9, 156, 956
HpyCH4V TGCA 6 cut(s) 231, 297, 459, 481, 913, 952
HpyF10VI GCNNNNNNNGC 1 cut(s) 929
HpyF3I CTNAG 1 cut(s) 371
HpySE526I ACGT 3 cut(s) 9, 156, 956
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 7 cut(s) 56, 97, 208, 280, 479, 696, 770
HspAI GCGC 1 cut(s) 386
Kzo9I GATC 2 cut(s) 397, 626
LmnI GCTCC 2 cut(s) 559, 619
Lsp1109I GCAGC 3 cut(s) 70, 687, 700
LweI GCATC 4 cut(s) 292, 414, 645, 877
MaeI CTAG 3 cut(s) 38, 429, 831
MaeII ACGT 3 cut(s) 9, 156, 956
MaeIII GTNAC 4 cut(s) 207, 313, 505, 584
MalI GATC 2 cut(s) 399, 628
MboI GATC 2 cut(s) 397, 626
MboII GAAGA 4 cut(s) 123, 755, 760, 905
MflI RGATCY 1 cut(s) 626
MhlI GDGCHC 4 cut(s) 483, 545, 616, 781
MluCI AATT 8 cut(s) 32, 57, 263, 328, 471, 731, 840, 848
MnlI CCTC 7 cut(s) 13, 112, 395, 537, 543, 655, 767
MseI TTAA 5 cut(s) 351, 414, 590, 608, 623
MslI CAYNNNNRTG 1 cut(s) 311
MspCI CTTAAG 1 cut(s) 622
MspI CCGG 1 cut(s) 872
MwoI GCNNNNNNNGC 1 cut(s) 929
NcoI CCATGG 1 cut(s) 692
NdeII GATC 2 cut(s) 397, 626
NlaIII CATG 7 cut(s) 56, 97, 208, 280, 479, 696, 770
NlaIV GGNNCC 2 cut(s) 809, 924
NmuCI GTSAC 1 cut(s) 313
NspI RCATGY 1 cut(s) 208
PaeR7I CTCGAG 1 cut(s) 179
PagI TCATGA 1 cut(s) 766
PciI ACATGT 1 cut(s) 204
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PfeI GAWTC 3 cut(s) 493, 500, 665
PflFI GACNNNGTC 2 cut(s) 44, 811
PflMI CCANNNNNTGG 1 cut(s) 114
PkrI GCNGC 3 cut(s) 85, 677, 690
PpuMI RGGWCCY 1 cut(s) 807
PscI ACATGT 1 cut(s) 204
PshBI ATTAAT 1 cut(s) 414
Psp124BI GAGCTC 1 cut(s) 616
Psp5II RGGWCCY 1 cut(s) 807
PspN4I GGNNCC 2 cut(s) 809, 924
PspPI GGNCC 2 cut(s) 754, 807
PspPPI RGGWCCY 1 cut(s) 807
PspXI VCTCGAGB 1 cut(s) 179
PsuI RGATCY 1 cut(s) 626
PsyI GACNNNGTC 2 cut(s) 44, 811
RseI CAYNNNNRTG 1 cut(s) 311
SacI GAGCTC 1 cut(s) 616
SalI GTCGAC 1 cut(s) 24
SaqAI TTAA 5 cut(s) 351, 414, 590, 608, 623
SatI GCNGC 3 cut(s) 84, 676, 689
Sau3AI GATC 2 cut(s) 397, 626
Sau96I GGNCC 2 cut(s) 754, 807
SduI GDGCHC 4 cut(s) 483, 545, 616, 781
SfaNI GCATC 4 cut(s) 292, 414, 645, 877
Sfr274I CTCGAG 1 cut(s) 179
SinI GGWCC 1 cut(s) 807
SlaI CTCGAG 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 311
SmlI CTYRAG 2 cut(s) 179, 622
SmoI CTYRAG 2 cut(s) 179, 622
Sse9I AATT 8 cut(s) 32, 57, 263, 328, 471, 731, 840, 848
SsiI CCGC 1 cut(s) 890
SspMI CTAG 3 cut(s) 38, 429, 831
SstI GAGCTC 1 cut(s) 616
StyI CCWWGG 2 cut(s) 580, 692
TaaI ACNGT 3 cut(s) 511, 865, 906
TaiI ACGT 3 cut(s) 12, 159, 959
TaqI TCGA 7 cut(s) 25, 153, 180, 400, 422, 469, 681
TasI AATT 8 cut(s) 32, 57, 263, 328, 471, 731, 840, 848
TfiI GAWTC 3 cut(s) 493, 500, 665
Tru1I TTAA 5 cut(s) 351, 414, 590, 608, 623
Tru9I TTAA 5 cut(s) 351, 414, 590, 608, 623
TscAI CASTG 1 cut(s) 119
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 3 cut(s) 83, 675, 688
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 5 cut(s) 69, 324, 464, 755, 872
TspRI CASTG 1 cut(s) 119
Tth111I GACNNNGTC 2 cut(s) 44, 811
Van91I CCANNNNNTGG 1 cut(s) 114
Vha464I CTTAAG 1 cut(s) 622
VneI GTGCAC 1 cut(s) 479
VpaK11BI GGWCC 1 cut(s) 807
VspI ATTAAT 1 cut(s) 414
XapI RAATTY 6 cut(s) 57, 263, 471, 731, 840, 848
XceI RCATGY 1 cut(s) 208
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
XhoI CTCGAG 1 cut(s) 179
XmiI GTMKAC 2 cut(s) 25, 360
XspI CTAG 3 cut(s) 38, 429, 831
ZraI GACGTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.